jgi.p|Nanoce1779_2|603925, mRNA_8767 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603925
Unique NamemRNA_8767
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length862
Alignment locationscaffold_28:73413..74757 +

Link to JBrowse

Properties
Property NameValue
TranscriptId604011
TrackFilteredModels2
ProteinId603925
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:73413..74757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603925gene_8767Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603925mRNA_8767-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8767CDS_8767Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8767 ID=mRNA_8767|Name=jgi.p|Nanoce1779_2|603925|organism=Nannochloropsis oceanica|type=mRNA|length=862bp
CGACGACAAAGGCGAGGAAGAGGATGAGGAGGAGGAGGAAGAAAAGGAGG
AAGAGCGGGTTGTAATGGCAGGCGCCACGATCTGTCCCATCAGCAGCGAC
AGCAGCAACAGCAGCAGCAGCAACCTCACCACCCCTTCCAAGAAGTTTCC
CTCTTTCGAAGGAAAAAGCGACCAGACCCCTCAACAACAGCGGCAAGAGC
GTCTTGCCCTCCTCCACGCACGCCTGCGGGAGCTGGAAAACGAGAATCTC
CGGCTGCTCCAACACCAACAGCAAGCTGCTGTCCGGGAGGAGAAAGCCAA
GGAGGAGGTGGAGACGCTCCGTGCTTCCCTTCTCTCCCATTCCCTTGCCG
GGGAGGTAGAGGCGTTGAAAAGGGAGCAGCAGTTGAAAGATCAGCTGGCG
GAAGTGAGCAAGAGGCTGGTGGCGGCTGAGAAGAAGGGAAAGGCAGGGGA
GGGCGTGAGGGAAGAGATGGCGATGTTACAGGACGAGTTGGACCTGATTC
GCCCTACCGCAGAAAAGCTTGCCCTGACTGAAGAGGCTCTGGGGAAGGCC
AAGACCAAACTCCAGGACTTGCGCGACGTCAGGGAACGCCTGATGGAGGA
GCAGGCGGCGCACGCGGAAGCTGTAGAAACCTCGCTCAAGTACGAACGAG
AGCTGCAGCAGCTGCCAGCCCTCAAACGTCAGATCGAGACCCTCAAGGCC
GGCGCCACCGACACGGAACTTACCCTACGAGAGCTTCAGGCCGCCCTGGC
CGAGGACGAGGCTTTAAAACAAAAGCAACAGCTAGAAATCCATGCCTTGC
GCCAGACGTTGGCCGTGACCTCTCTCCGCGGGGCAGACGCCACGGCCTTC
GCCGCTGCCCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|603925

>mRNA_8767-protein ID=mRNA_8767-protein|Name=jgi.p|Nanoce1779_2|603925|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MAGATICPISSDSSNSSSSNLTTPSKKFPSFEGKSDQTPQQQRQERLALL
HARLRELENENLRLLQHQQQAAVREEKAKEEVETLRASLLSHSLAGEVEA
LKREQQLKDQLAEVSKRLVAAEKKGKAGEGVREEMAMLQDELDLIRPTAE
KLALTEEALGKAKTKLQDLRDVRERLMEEQAAHAEAVETSLKYERELQQL
PALKRQIETLKAGATDTELTLRELQAALAEDEALKQKQQLEIHALRQTLA
VTSLRGADATAFAAAL
back to top

mRNA from alignment at scaffold_28:73413..74757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8767 ID=mRNA_8767|Name=jgi.p|Nanoce1779_2|603925|organism=Nannochloropsis oceanica|type=mRNA|length=1345bp|location=Sequence derived from alignment at scaffold_28:73413..74757+ (Nannochloropsis oceanica)
CGACGACAAAGGCGAGGAAGAGGATGAGGAGGAGGAGGAAGAAAAGGAGG
AAGAGCGGGTTGTAATGGCAGGCGCCACGATCTGTCCCATCAGCAGCGAC
AGCAGCAACAGCAGCAGCAGCAACCTCACCACCCCTTCCAAGAAGTTTCC
CTCTTTCGAAGGAAAAAGCGACCAGACCCCTCAACAACAGCGGCAAGAGC
GTCTTGCCCTCCTCCACGCACGCCTGCGGGAGCTGGAAAACGAGAATCTC
CGGCTGCTCCAACACCAACAGCAAGCTGCTGTCCGGGAGGAGAAAGCCAA
GGAGGAGGTGGAGACGCTCCGTGCTTCCCTTCTCTCCCATTCCCTTGCCG
GGGAGGTAGAGGCGTTGAAAAGGGAGCAGCAGTTGAAAGATCAGCTGGCG
GAAGTGAGCAAGAGGCTGGTGGCGGCTGAGAAGAAGGGAAAGGCAGGGGA
GGGCGTGAGGGAAGAGATGGCGATGTTACAGGTAGGAAAGGAAGGAGGGA
GGAAAGTAAGAGATAGGTGACACTTCCAAAATAACAGTCGGTCGAAAGAC
TCTGTTCCAACGTGCTCATCCTCCCATCGTCGCTCCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTGTATCCTCCTTCCCACCCCATGCAGGACGAGTTG
GACCTGATTCGCCCTACCGCAGAAAAGCTTGCCCTGACTGAAGAGGCTCT
GGGGAAGGCCAAGACCAAACTCCAGGACTTGCGCGACGTCAGGGAACGCC
TGATGGAGGAGCAGGTAGTGGAAGGAAAGAGGGAGGGAGGAAGGGAGCGA
GGGAGGGAGCGAGGGAGGGAGGGAGAAACCGAACAAGAGAAATTAAAATT
CTGGTTCTTGACACATCGCCTCCCTCCCTCCCTCTCTTTCTCCCTTCCTC
CATCCCTCCCTCCCTCCCTGACCTGCTCCTCCCTAGGCGGCGCACGCGGA
AGCTGTAGAAACCTCGCTCAAGTACGAACGAGAGCTGCAGCAGCTGCCAG
CCCTCAAACGTCAGATCGAGACCCTCAAGGCCGGTGCGTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTGCGCTACCGACCCAAAACTTATCCTGCGCTCAG
CACGAGCCCGAGTCGAAACATACCAGACAGAAGCTTCCGTCCTTCCCTCT
CCCACACGTACCCACCCTCCCTCCCTCCCTCCAGGCGCCACCGACACGGA
ACTTACCCTACGAGAGCTTCAGGCCGCCCTGGCCGAGGACGAGGCTTTAA
AACAAAAGCAACAGCTAGAAATCCATGCCTTGCGCCAGACGTTGGCCGTG
ACCTCTCTCCGCGGGGCAGACGCCACGGCCTTCGCCGCTGCCCTG
back to top

Coding sequence (CDS) from alignment at scaffold_28:73413..74757+

>mRNA_8767 ID=mRNA_8767|Name=jgi.p|Nanoce1779_2|603925|organism=Nannochloropsis oceanica|type=CDS|length=3192bp|location=Sequence derived from alignment at scaffold_28:73413..74757+ (Nannochloropsis oceanica)
ATGGCAGGCGCCACGATCTGTCCCATCAGCAGCGACAGCAGCAACAGCAG
CAGCAGCAACCTCACCACCCCTTCCAAGAAGTTTCCCTCTTTCGAAGGAA
AAAGCGACCAGACCCCTCAACAACAGCGGCAAGAGCGTCTTGCCCTCCTC
CACGCACGCCTGCGGGAGCTGGAAAACGAGAATCTCCGGCTGCTCCAACA
CCAACAGCAAGCTGCTGTCCGGGAGGAGAAAGCCAAGGAGGAGGTGGAGA
CGCTCCGTGCTTCCCTTCTCTCCCATTCCCTTGCCGGGGAGGTAGAGGCG
TTGAAAAGGGAGCAGCAGTTGAAAGATCAGCTGGCGGAAGTGAGCAAGAG
GCTGGTGGCGGCTGAGAAGAAGGGAAAGGCAGGGGAGGGCGTGAGGGAAG
AGATGGCGATGTTACAGGACGAGTTGGACCTGATTCGCCCTACCGCAGAA
AAGCTTGCCCTGACTGAAGAGGCTCTGGGGAAGGCCAAGACCAAACTCCA
GGACTTGCGCGACGTCAGGGAACGCCTGATGGAGGAGCAGGCGGCGCACG
CGGAAGCTGTAGAAACCTCGCTCAAGTACGAACGAGAGCTGCAGCAGCTG
CCAGCCCTCAAACGTCAGATCGAGACCCTCAAGGCCGGCGCCACCGACAC
GGAACTTACCCTACGAGAGCTTCAGGCCGCCCTGGCCGAGGACGAGGCTT
TAAAACAAAAGCAACAGCTAGAAATCCATGCCTTGCGCCAGACGTTGGCC
GTGACCTCTCTCCGCGGGGCAGACGCCACGGCCTTCGCCGCTGCCCTGAT
GGCAGGCGCCACGATCTGTCCCATCAGCAGCGACAGCAGCAACAGCAGCA
GCAGCAACCTCACCACCCCTTCCAAGAAGTTTCCCTCTTTCGAAGGAAAA
AGCGACCAGACCCCTCAACAACAGCGGCAAGAGCGTCTTGCCCTCCTCCA
CGCACGCCTGCGGGAGCTGGAAAACGAGAATCTCCGGCTGCTCCAACACC
AACAGCAAGCTGCTGTCCGGGAGGAGAAAGCCAAGGAGGAGGTGGAGACG
CTCCGTGCTTCCCTTCTCTCCCATTCCCTTGCCGGGGAGGTAGAGGCGTT
GAAAAGGGAGCAGCAGTTGAAAGATCAGCTGGCGGAAGTGAGCAAGAGGC
TGGTGGCGGCTGAGAAGAAGGGAAAGGCAGGGGAGGGCGTGAGGGAAGAG
ATGGCGATGTTACAGGACGAGTTGGACCTGATTCGCCCTACCGCAGAAAA
GCTTGCCCTGACTGAAGAGGCTCTGGGGAAGGCCAAGACCAAACTCCAGG
ACTTGCGCGACGTCAGGGAACGCCTGATGGAGGAGCAGGCGGCGCACGCG
GAAGCTGTAGAAACCTCGCTCAAGTACGAACGAGAGCTGCAGCAGCTGCC
AGCCCTCAAACGTCAGATCGAGACCCTCAAGGCCGGCGCCACCGACACGG
AACTTACCCTACGAGAGCTTCAGGCCGCCCTGGCCGAGGACGAGGCTTTA
AAACAAAAGCAACAGCTAGAAATCCATGCCTTGCGCCAGACGTTGGCCGT
GACCTCTCTCCGCGGGGCAGACGCCACGGCCTTCGCCGCTGCCCTGATGG
CAGGCGCCACGATCTGTCCCATCAGCAGCGACAGCAGCAACAGCAGCAGC
AGCAACCTCACCACCCCTTCCAAGAAGTTTCCCTCTTTCGAAGGAAAAAG
CGACCAGACCCCTCAACAACAGCGGCAAGAGCGTCTTGCCCTCCTCCACG
CACGCCTGCGGGAGCTGGAAAACGAGAATCTCCGGCTGCTCCAACACCAA
CAGCAAGCTGCTGTCCGGGAGGAGAAAGCCAAGGAGGAGGTGGAGACGCT
CCGTGCTTCCCTTCTCTCCCATTCCCTTGCCGGGGAGGTAGAGGCGTTGA
AAAGGGAGCAGCAGTTGAAAGATCAGCTGGCGGAAGTGAGCAAGAGGCTG
GTGGCGGCTGAGAAGAAGGGAAAGGCAGGGGAGGGCGTGAGGGAAGAGAT
GGCGATGTTACAGGACGAGTTGGACCTGATTCGCCCTACCGCAGAAAAGC
TTGCCCTGACTGAAGAGGCTCTGGGGAAGGCCAAGACCAAACTCCAGGAC
TTGCGCGACGTCAGGGAACGCCTGATGGAGGAGCAGGCGGCGCACGCGGA
AGCTGTAGAAACCTCGCTCAAGTACGAACGAGAGCTGCAGCAGCTGCCAG
CCCTCAAACGTCAGATCGAGACCCTCAAGGCCGGCGCCACCGACACGGAA
CTTACCCTACGAGAGCTTCAGGCCGCCCTGGCCGAGGACGAGGCTTTAAA
ACAAAAGCAACAGCTAGAAATCCATGCCTTGCGCCAGACGTTGGCCGTGA
CCTCTCTCCGCGGGGCAGACGCCACGGCCTTCGCCGCTGCCCTGATGGCA
GGCGCCACGATCTGTCCCATCAGCAGCGACAGCAGCAACAGCAGCAGCAG
CAACCTCACCACCCCTTCCAAGAAGTTTCCCTCTTTCGAAGGAAAAAGCG
ACCAGACCCCTCAACAACAGCGGCAAGAGCGTCTTGCCCTCCTCCACGCA
CGCCTGCGGGAGCTGGAAAACGAGAATCTCCGGCTGCTCCAACACCAACA
GCAAGCTGCTGTCCGGGAGGAGAAAGCCAAGGAGGAGGTGGAGACGCTCC
GTGCTTCCCTTCTCTCCCATTCCCTTGCCGGGGAGGTAGAGGCGTTGAAA
AGGGAGCAGCAGTTGAAAGATCAGCTGGCGGAAGTGAGCAAGAGGCTGGT
GGCGGCTGAGAAGAAGGGAAAGGCAGGGGAGGGCGTGAGGGAAGAGATGG
CGATGTTACAGGACGAGTTGGACCTGATTCGCCCTACCGCAGAAAAGCTT
GCCCTGACTGAAGAGGCTCTGGGGAAGGCCAAGACCAAACTCCAGGACTT
GCGCGACGTCAGGGAACGCCTGATGGAGGAGCAGGCGGCGCACGCGGAAG
CTGTAGAAACCTCGCTCAAGTACGAACGAGAGCTGCAGCAGCTGCCAGCC
CTCAAACGTCAGATCGAGACCCTCAAGGCCGGCGCCACCGACACGGAACT
TACCCTACGAGAGCTTCAGGCCGCCCTGGCCGAGGACGAGGCTTTAAAAC
AAAAGCAACAGCTAGAAATCCATGCCTTGCGCCAGACGTTGGCCGTGACC
TCTCTCCGCGGGGCAGACGCCACGGCCTTCGCCGCTGCCCTG
back to top
Synonyms
Publications