jgi.p|Nanoce1779_2|603912, mRNA_8765 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603912
Unique NamemRNA_8765
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length556
Alignment locationscaffold_28:71151..71977 -

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Properties
Property NameValue
TranscriptId603998
TrackFilteredModels2
ProteinId603912
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:71151..71977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603912gene_8765Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603912mRNA_8765-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8765CDS_8765Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8765 ID=mRNA_8765|Name=jgi.p|Nanoce1779_2|603912|organism=Nannochloropsis oceanica|type=mRNA|length=556bp
ACAGACACAAAAGACACAAGCAAGATGTCTCTGGCTGAGCTTTCTCCTGC
CCAAAAGGAGGAGATGGTGATCTCCCTCTCCGCCCTTCTCCTCCAAGACA
GCGGCGTAGACATGTCAGCCGAGAACCTTGAGGCAGTCGTCAAGGCGTCC
GGCAACACCGTCGCCGCCTACTACCCTGCTTTCTTCGCTAGCATGATCGA
GAAGGCTGGGGGTAAGCTTGACAAGTTCATGGGTGCACCCGGTGCTGGTG
GAGGAGGAGCGGCGGCTGCGGCCCCGGCGGCAGCAGCAGCGGCTGCGCCT
GAGGCGGGGAAGAAGGAGAAGAAGGAGGAGAAAGAGGAGGAGGCAGACCT
GGGGGGCGCCAGTATGTTTGGTGGAGACGGCTACTAAATTCTTCGGACAC
CCGAGGGGAGCATGGATTAAGGGGAGCCACAGGGTAGGAAAGTGGAGGGG
AAAAGGCCATGACGAGAACGAGGAAGAGGGAGAGGAGGAGGAGGAGCAGC
GGGAGAATCAGACTCGGCATGATGTTTTTTTAAAAGGGGGGGGAACAGGA
GGATGA
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protein sequence of jgi.p|Nanoce1779_2|603912

>mRNA_8765-protein ID=mRNA_8765-protein|Name=jgi.p|Nanoce1779_2|603912|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLEAVVKASGNTVAAYY
PAFFASMIEKAGGKLDKFMGAPGAGGGGAAAAAPAAAAAAAPEAGKKEKK
EEKEEEADLGGASMFGGDGY*
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mRNA from alignment at scaffold_28:71151..71977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8765 ID=mRNA_8765|Name=jgi.p|Nanoce1779_2|603912|organism=Nannochloropsis oceanica|type=mRNA|length=827bp|location=Sequence derived from alignment at scaffold_28:71151..71977- (Nannochloropsis oceanica)
ACAGACACAAAAGACACAAGCAAGATGTCTCTGGCTGAGCTTTCTCCTGC
CCAAAAGGAGGAGATGGTGATCTCCCTCTCCGCCCTTCTCCTCCAAGACA
GCGGCGTAGACATGTCAGCCGAGAACCTTGAGGCAGTCGTCAAGGTATGT
AGGTTTAGGACTTAAGGACAGGGAGGAGGGCGAGGAGAAGGAGAAGGAGA
AGAAGGTGATGATTGTGGTGAAGTTGCTGCGACTTGTTCCTCCAGCTGCT
GCTGCTTTCGATGTTATCGTCAGGTTGGAAGAAAGGGAGGAGGAGGCAGG
GGCGTGAGCACAAGGCGGCATGGCACACATGAAGTCTTCTGTGGAGTAAT
CTATTATACTCTCCTCATCATCCTCTCACCCACATATTCCTTCCTCCCTC
CTCCCTTTCCCTCAGGCGTCCGGCAACACCGTCGCCGCCTACTACCCTGC
TTTCTTCGCTAGCATGATCGAGAAGGCTGGGGGTAAGCTTGACAAGTTCA
TGGGTGCACCCGGTGCTGGTGGAGGAGGAGCGGCGGCTGCGGCCCCGGCG
GCAGCAGCAGCGGCTGCGCCTGAGGCGGGGAAGAAGGAGAAGAAGGAGGA
GAAAGAGGAGGAGGCAGACCTGGGGGGCGCCAGTATGTTTGGTGGAGACG
GCTACTAAATTCTTCGGACACCCGAGGGGAGCATGGATTAAGGGGAGCCA
CAGGGTAGGAAAGTGGAGGGGAAAAGGCCATGACGAGAACGAGGAAGAGG
GAGAGGAGGAGGAGGAGCAGCGGGAGAATCAGACTCGGCATGATGTTTTT
TTAAAAGGGGGGGGAACAGGAGGATGA
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Coding sequence (CDS) from alignment at scaffold_28:71151..71977-

>mRNA_8765 ID=mRNA_8765|Name=jgi.p|Nanoce1779_2|603912|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_28:71151..71977- (Nannochloropsis oceanica)
GCGTCCGGCAACACCGTCGCCGCCTACTACCCTGCTTTCTTCGCTAGCAT
GATCGAGAAGGCTGGGGGTAAGCTTGACAAGTTCATGGGTGCACCCGGTG
CTGGTGGAGGAGGAGCGGCGGCTGCGGCCCCGGCGGCAGCAGCAGCGGCT
GCGCCTGAGGCGGGGAAGAAGGAGAAGAAGGAGGAGAAAGAGGAGGAGGC
AGACCTGGGGGGCGCCAGTATGTTTGGTGGAGACGGCTACTAAATGTCTC
TGGCTGAGCTTTCTCCTGCCCAAAAGGAGGAGATGGTGATCTCCCTCTCC
GCCCTTCTCCTCCAAGACAGCGGCGTAGACATGTCAGCCGAGAACCTTGA
GGCAGTCGTCAAGGCGTCCGGCAACACCGTCGCCGCCTACTACCCTGCTT
TCTTCGCTAGCATGATCGAGAAGGCTGGGGGTAAGCTTGACAAGTTCATG
GGTGCACCCGGTGCTGGTGGAGGAGGAGCGGCGGCTGCGGCCCCGGCGGC
AGCAGCAGCGGCTGCGCCTGAGGCGGGGAAGAAGGAGAAGAAGGAGGAGA
AAGAGGAGGAGGCAGACCTGGGGGGCGCCAGTATGTTTGGTGGAGACGGC
TACTAAATGTCTCTGGCTGAGCTTTCTCCTGCCCAAAAGGAGGAGATGGT
GATCTCCCTCTCCGCCCTTCTCCTCCAAGACAGCGGCGTAGACATGTCAG
CCGAGAACCTTGAGGCAGTCGTCAAG
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Synonyms
Publications