jgi.p|Nanoce1779_2|633134, mRNA_8760 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633134
Unique NamemRNA_8760
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length776
Alignment locationscaffold_28:58113..59096 +

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Properties
Property NameValue
TranscriptId633220
TrackFilteredModels2
ProteinId633134
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:58113..59096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633134gene_8760Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633134mRNA_8760-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8760CDS_8760Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8760 ID=mRNA_8760|Name=jgi.p|Nanoce1779_2|633134|organism=Nannochloropsis oceanica|type=mRNA|length=776bp
CAGGTCATTACGTGCTCTCAAAAATAACTATGCCGTCCCACACTGGCACC
ACCACCAAGGCAAGCCATGGACCGCCCTTCAAAAAAGTCACTCTTATCAA
GAATTGTTTGGGCAAGGTGCGCTCCGCGTCCATGTCGTTGCCTCCGCCCG
CGTACGTCTATGGCTGCCCTCAAGGCAAGGACAACGAGGGCGTTGGACAG
TTGATATCTAAATGGCATGAGTCCACCCGCCGTTCCCTTACTGGCTCGGG
TACCAAGCCTTCGTGGATTCGGAGCAACCTTGCAGCTCTCCAAAAGGGGC
ACGTCACGGCCCGTGCGCAGCGTGCCTACAGCATCCGGCACCCCCGTTTT
CTTCCTGACCCTTCCTTGACCATCCTTCGGAAAAAGACAATGGCCACAAA
AACGCTGATAAAGAAAACAAAGAAGGACAAAGGGCGGGAAAGTGGTGGGA
AAGAGGAAGAGGAGGAGGAGGAAGAGGTCATCTTTGGCCGGCCCTCAGGT
ACTAATGACACGACCATGAAGGAGGTGCTCGAAGGGCGTTTCAATCCCGA
GATGGCAGGTGATCAGGAGAGGGATTACCCTCTGATCGGTGATCGCATCT
TGTATGGGCGTGTCCCCAAGCCCCGGCCCACAAAGGCCAGTGCGTTGCTC
CAGCTGGCCAAGGAAGAAGAGGCAGCCGCAGCCCTCAAGAAGGAGAAGGA
GCGACTTGGAGATGTCACAATGTGGAAAATGTCTAAGTGGGACAAAGTCG
AGCCCAAAGTGGTGGTATGGGCATAA
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protein sequence of jgi.p|Nanoce1779_2|633134

>mRNA_8760-protein ID=mRNA_8760-protein|Name=jgi.p|Nanoce1779_2|633134|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MPSHTGTTTKASHGPPFKKVTLIKNCLGKVRSASMSLPPPAYVYGCPQGK
DNEGVGQLISKWHESTRRSLTGSGTKPSWIRSNLAALQKGHVTARAQRAY
SIRHPRFLPDPSLTILRKKTMATKTLIKKTKKDKGRESGGKEEEEEEEEV
IFGRPSGTNDTTMKEVLEGRFNPEMAGDQERDYPLIGDRILYGRVPKPRP
TKASALLQLAKEEEAAAALKKEKERLGDVTMWKMSKWDKVEPKVVVWA*
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mRNA from alignment at scaffold_28:58113..59096+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8760 ID=mRNA_8760|Name=jgi.p|Nanoce1779_2|633134|organism=Nannochloropsis oceanica|type=mRNA|length=984bp|location=Sequence derived from alignment at scaffold_28:58113..59096+ (Nannochloropsis oceanica)
CAGGTCATTACGTGCTCTCAAAAATAACTATGCCGTCCCACACTGGCACC
ACCACCAAGGCAAGCCATGGACCGCCCTTCAAAAAAGTCACTCTTATCAA
GAATTGTTTGGGCAAGGTGCGCTCCGCGTCCATGTCGTTGCCTCCGCCCG
CGTACGTCTATGGCTGCCCTCAAGGCAAGGACAACGAGGGCGTTGGACAG
TGTACGTGTAGCACACACAGGAGGGAACATAACGTGGAAATAATAAAGAA
TATGTAATCTTCGCTGTCTGTTGTTCATTGTGTGCGTCCTTTGAAGCGTG
TCCCTCCTTCTTCCCCCACATCTCTTCATGCTTCCACATTTTCAGACTTC
TTCCTCTTGATCACTCTCTTACACACACTTGACTACCCCCTCTCTCCCCT
CCAAAATAGTGATATCTAAATGGCATGAGTCCACCCGCCGTTCCCTTACT
GGCTCGGGTACCAAGCCTTCGTGGATTCGGAGCAACCTTGCAGCTCTCCA
AAAGGGGCACGTCACGGCCCGTGCGCAGCGTGCCTACAGCATCCGGCACC
CCCGTTTTCTTCCTGACCCTTCCTTGACCATCCTTCGGAAAAAGACAATG
GCCACAAAAACGCTGATAAAGAAAACAAAGAAGGACAAAGGGCGGGAAAG
TGGTGGGAAAGAGGAAGAGGAGGAGGAGGAAGAGGTCATCTTTGGCCGGC
CCTCAGGTACTAATGACACGACCATGAAGGAGGTGCTCGAAGGGCGTTTC
AATCCCGAGATGGCAGGTGATCAGGAGAGGGATTACCCTCTGATCGGTGA
TCGCATCTTGTATGGGCGTGTCCCCAAGCCCCGGCCCACAAAGGCCAGTG
CGTTGCTCCAGCTGGCCAAGGAAGAAGAGGCAGCCGCAGCCCTCAAGAAG
GAGAAGGAGCGACTTGGAGATGTCACAATGTGGAAAATGTCTAAGTGGGA
CAAAGTCGAGCCCAAAGTGGTGGTATGGGCATAA
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Coding sequence (CDS) from alignment at scaffold_28:58113..59096+

>mRNA_8760 ID=mRNA_8760|Name=jgi.p|Nanoce1779_2|633134|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_28:58113..59096+ (Nannochloropsis oceanica)
ATGCCGTCCCACACTGGCACCACCACCAAGGCAAGCCATGGACCGCCCTT
CAAAAAAGTCACTCTTATCAAGAATTGTTTGGGCAAGGTGCGCTCCGCGT
CCATGTCGTTGCCTCCGCCCGCGTACGTCTATGGCTGCCCTCAAGGCAAG
GACAACGAGGGCGTTGGACAGTTGATATCTAAATGGCATGAGTCCACCCG
CCGTTCCCTTACTGGCTCGGGTACCAAGCCTTCGTGGATTCGGAGCAACC
TTGCAGCTCTCCAAAAGGGGCACGTCACGGCCCGTGCGCAGCGTGCCTAC
AGCATCCGGCACCCCCGTTTTCTTCCTGACCCTTCCTTGACCATCCTTCG
GAAAAAGACAATGGCCACAAAAACGCTGATAAAGAAAACAAAGAAGGACA
AAGGGCGGGAAAGTGGTGGGAAAGAGGAAGAGGAGGAGGAGGAAGAGGTC
ATCTTTGGCCGGCCCTCAGGTACTAATGACACGACCATGAAGGAGGTGCT
CGAAGGGCGTTTCAATCCCGAGATGGCAGGTGATCAGGAGAGGGATTACC
CTCTGATCGGTGATCGCATCTTGTATGGGCGTGTCCCCAAGCCCCGGCCC
ACAAAGGCCAGTGCGTTGCTCCAGCTGGCCAAGGAAGAAGAGGCAGCCGC
AGCCCTCAAGAAGGAGAAGGAGCGACTTGGAGATGTCACAATGTGGAAAA
TGTCTAAGTGGGACAAAGTCGAGCCCAAAGTGGTGGTATGGGCATAAATG
CCGTCCCACACTGGCACCACCACCAAGGCAAGCCATGGACCGCCCTTCAA
AAAAGTCACTCTTATCAAGAATTGTTTGGGCAAGGTGCGCTCCGCGTCCA
TGTCGTTGCCTCCGCCCGCGTACGTCTATGGCTGCCCTCAAGGCAAGGAC
AACGAGGGCGTTGGACAGTTGATATCTAAATGGCATGAGTCCACCCGCCG
TTCCCTTACTGGCTCGGGTACCAAGCCTTCGTGGATTCGGAGCAACCTTG
CAGCTCTCCAAAAGGGGCACGTCACGGCCCGTGCGCAGCGTGCCTACAGC
ATCCGGCACCCCCGTTTTCTTCCTGACCCTTCCTTGACCATCCTTCGGAA
AAAGACAATGGCCACAAAAACGCTGATAAAGAAAACAAAGAAGGACAAAG
GGCGGGAAAGTGGTGGGAAAGAGGAAGAGGAGGAGGAGGAAGAGGTCATC
TTTGGCCGGCCCTCAGGTACTAATGACACGACCATGAAGGAGGTGCTCGA
AGGGCGTTTCAATCCCGAGATGGCAGGTGATCAGGAGAGGGATTACCCTC
TGATCGGTGATCGCATCTTGTATGGGCGTGTCCCCAAGCCCCGGCCCACA
AAGGCCAGTGCGTTGCTCCAGCTGGCCAAGGAAGAAGAGGCAGCCGCAGC
CCTCAAGAAGGAGAAGGAGCGACTTGGAGATGTCACAATGTGGAAAATGT
CTAAGTGGGACAAAGTCGAGCCCAAAGTGGTGGTATGGGCATAA
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Synonyms
Publications