jgi.p|Nanoce1779_2|574493, mRNA_876 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574493
Unique NamemRNA_876
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1007
Alignment locationscaffold_2:643069..644509 -

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Properties
Property NameValue
TranscriptId574579
TrackFilteredModels2
ProteinId574493
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:643069..644509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574493gene_876Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574493mRNA_876-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_876CDS_876Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_876 ID=mRNA_876|Name=jgi.p|Nanoce1779_2|574493|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp
CGACAACGGGTGCAACATCACAACACACCTGCATCAAAAGTAGTACAAGG
AGCAGCAGCAGCAGCAGCACCAGCAGCAGAAGAAGAAAAGGCCGCGGAGT
AGCAGGAGCAGGAGCACTCATGACTATTACCCTCCTATTCCTCTTTCCAA
CGCCTACTAGCGCGCATCCTTTTGGAACGGACAAAGCTGGCATGGGTGTA
CGCTCGTCCTTGCATGTCGCATTGTCATCTTATCAGGAACAGCAGGTTGG
TGAGACGCATATAGCCCGCTCGAAGTTGCTGGACGACCACGTATTTCATG
GCACCACCACGTGCGCTTTTGTCTTCGATCACGGAATTTTGGTGGCTGTG
GATTCCAGGGCAAGCATGGGGAGCTACATTGGCTCGAGCGCCACGGAAAA
GGTGCTGCCCGTCAGTCAGCATATTTTGGCAACCATGGCAGGCGGGGCAG
CGGATTGTGCGTTCTGGATTCGGCATTTGGCGATGCAGGCACGATTGTAC
GAGATAGAAAATGAAGGACAGCAATTAACGGTGAGGCGGGCATCGAAGCT
GTTGGCCAACAACATTGCGAGGTTCCTGGGCAAACTCTCAATGGGCACCA
TGGTACTAGGCCATGATTCACAAGAGGGTTTCAGCATTTATTACGTCGAC
AACGACGGTACCCGAAGCAAAGGAAAACTCTTTGCCGTCGGCTCAGGTAG
CACCTACGCATACAGCATCCTAGACGCGGGTTACCGGCCGGAAATGTCCG
TGGAGGAAGCAAAGGAATTGGGGTTACGCGCAATTCGCCACGCGACGTAC
CGAGACGCGTTTTCGGGCGGGTTTGTCAATGTCTACCTGGTGCAGGCGTC
GGGCTGGCGGCGAATTGCCCGCGTGGATGGAGGATTTTTGTCGGTACCAC
CATTAAGGACAGGGGACGTAGGTGGGACAAGGAAAGAAATTGGGGTCAAG
TAAGGGTGGAAATAAGCAAGAAGGAAGATAAAGATAAATGAAATGTCATG
ACACACG
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protein sequence of jgi.p|Nanoce1779_2|574493

>mRNA_876-protein ID=mRNA_876-protein|Name=jgi.p|Nanoce1779_2|574493|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MTITLLFLFPTPTSAHPFGTDKAGMGVRSSLHVALSSYQEQQVGETHIAR
SKLLDDHVFHGTTTCAFVFDHGILVAVDSRASMGSYIGSSATEKVLPVSQ
HILATMAGGAADCAFWIRHLAMQARLYEIENEGQQLTVRRASKLLANNIA
RFLGKLSMGTMVLGHDSQEGFSIYYVDNDGTRSKGKLFAVGSGSTYAYSI
LDAGYRPEMSVEEAKELGLRAIRHATYRDAFSGGFVNVYLVQASGWRRIA
RVDGGFLSVPPLRTGDVGGTRKEIGVK*
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mRNA from alignment at scaffold_2:643069..644509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_876 ID=mRNA_876|Name=jgi.p|Nanoce1779_2|574493|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at scaffold_2:643069..644509- (Nannochloropsis oceanica)
CGACAACGGGTGCAACATCACAACACACCTGCATCAAAAGTAGTACAAGG
AGCAGCAGCAGCAGCAGCACCAGCAGCAGAAGAAGAAAAGGCCGCGGAGT
AGCAGGAGCAGGAGCACTCATGACTATTACCCTCCTATTCCTCTTTCCAA
CGCCTACTAGCGCGCATCCTTTTGGAACGGACAAAGCTGGCATGGGTGTA
CGCTCGTCCTTGCATGTCGCATTGTCATCTTATCAGGAACAGCAGGTTGG
TGAGACGCATATAGCCCGCTCGAAGTTGCTGGACGACCACGTATTTCATG
GCACCACCACGTGCGCTTTTGTCTTCGATCACGGAATTTTGGTGGCTGTG
GATTCCAGGGCAAGCATGGGTAAGGATAATTGATAATCGACCGGGCTATC
AGCGACGTCTTCTCAACGGATCCCTCCCATCCCGACATTTCAGGGAGCTA
CATTGGCTCGAGCGCCACGGAAAAGGTGCTGCCCGTCAGTCAGCATATTT
TGGCAACCATGGCAGGCGGGGCAGCGGATTGTGCGTTCTGGATTCGGCAT
TTGGCGATGCAGGTAACAATGTGTGGCCCTGGTATTCATCTCGACCACTT
AGTTTCTCGGCGCTGGGTCTGCAAGACTTCTCGCTTAATCTTTTTGCTTG
CTTCCCCCCTCTGCTCTCCAGGCACGATTGTACGAGATAGAAAATGAAGG
ACAGCAATTAACGGTGAGGCGGGCATCGAAGCTGTTGGCCAACAACATTG
CGAGGTACGAGGAAAATGGGTGTCGCAAGGAGAAGGGAGGGGTGGGGATG
GGCAAGGGGAAGAAACGCTCCCTTTCTCTTGTGGTTGATAGCCATTTTCT
ACCTGTATTCTTTAATCAGCTCTCGCGAGCCAACAAGAAAGAAACGCATT
CGTGTGACGTGTGATGCATGTTAAAGCGCGGCGAGGCTACTTTTTCAGTT
CCCTATACATCATATTTGCCACCCTTCCATCTACCGCTTTCTTATCAAAT
CTCAGGTTCCTGGGCAAACTCTCAATGGGCACCATGGTACTAGGCCATGA
TTCACAAGAGGGTTTCAGCATTTATTACGTCGACAACGACGGTACCCGAA
GCAAAGGAAAACTCTTTGCCGTCGGCTCAGGTAGCACCTACGCATACAGC
ATCCTAGACGCGGGTTACCGGCCGGAAATGTCCGTGGAGGAAGCAAAGGA
ATTGGGGTTACGCGCAATTCGCCACGCGACGTACCGAGACGCGTTTTCGG
GCGGGTTTGTCAATGTCTACCTGGTGCAGGCGTCGGGCTGGCGGCGAATT
GCCCGCGTGGATGGAGGATTTTTGTCGGTACCACCATTAAGGACAGGGGA
CGTAGGTGGGACAAGGAAAGAAATTGGGGTCAAGTAAGGGTGGAAATAAG
CAAGAAGGAAGATAAAGATAAATGAAATGTCATGACACACG
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Coding sequence (CDS) from alignment at scaffold_2:643069..644509-

>mRNA_876 ID=mRNA_876|Name=jgi.p|Nanoce1779_2|574493|organism=Nannochloropsis oceanica|type=CDS|length=3336bp|location=Sequence derived from alignment at scaffold_2:643069..644509- (Nannochloropsis oceanica)
GTTCCTGGGCAAACTCTCAATGGGCACCATGGTACTAGGCCATGATTCAC
AAGAGGGTTTCAGCATTTATTACGTCGACAACGACGGTACCCGAAGCAAA
GGAAAACTCTTTGCCGTCGGCTCAGGTAGCACCTACGCATACAGCATCCT
AGACGCGGGTTACCGGCCGGAAATGTCCGTGGAGGAAGCAAAGGAATTGG
GGTTACGCGCAATTCGCCACGCGACGTACCGAGACGCGTTTTCGGGCGGG
TTTGTCAATGTCTACCTGGTGCAGGCGTCGGGCTGGCGGCGAATTGCCCG
CGTGGATGGAGGATTTTTGTCGGTACCACCATTAAGGACAGGGGACGTAG
GTGGGACAAGGAAAGAAATTGGGGTCAAGTAAGCACGATTGTACGAGATA
GAAAATGAAGGACAGCAATTAACGGTGAGGCGGGCATCGAAGCTGTTGGC
CAACAACATTGCGAGGGAGCTACATTGGCTCGAGCGCCACGGAAAAGGTG
CTGCCCGTCAGTCAGCATATTTTGGCAACCATGGCAGGCGGGGCAGCGGA
TTGTGCGTTCTGGATTCGGCATTTGGCGATGCAGATGACTATTACCCTCC
TATTCCTCTTTCCAACGCCTACTAGCGCGCATCCTTTTGGAACGGACAAA
GCTGGCATGGGTGTACGCTCGTCCTTGCATGTCGCATTGTCATCTTATCA
GGAACAGCAGGTTGGTGAGACGCATATAGCCCGCTCGAAGTTGCTGGACG
ACCACGTATTTCATGGCACCACCACGTGCGCTTTTGTCTTCGATCACGGA
ATTTTGGTGGCTGTGGATTCCAGGGCAAGCATGGGTTCCTGGGCAAACTC
TCAATGGGCACCATGGTACTAGGCCATGATTCACAAGAGGGTTTCAGCAT
TTATTACGTCGACAACGACGGTACCCGAAGCAAAGGAAAACTCTTTGCCG
TCGGCTCAGGTAGCACCTACGCATACAGCATCCTAGACGCGGGTTACCGG
CCGGAAATGTCCGTGGAGGAAGCAAAGGAATTGGGGTTACGCGCAATTCG
CCACGCGACGTACCGAGACGCGTTTTCGGGCGGGTTTGTCAATGTCTACC
TGGTGCAGGCGTCGGGCTGGCGGCGAATTGCCCGCGTGGATGGAGGATTT
TTGTCGGTACCACCATTAAGGACAGGGGACGTAGGTGGGACAAGGAAAGA
AATTGGGGTCAAGTAAGCACGATTGTACGAGATAGAAAATGAAGGACAGC
AATTAACGGTGAGGCGGGCATCGAAGCTGTTGGCCAACAACATTGCGAGG
GAGCTACATTGGCTCGAGCGCCACGGAAAAGGTGCTGCCCGTCAGTCAGC
ATATTTTGGCAACCATGGCAGGCGGGGCAGCGGATTGTGCGTTCTGGATT
CGGCATTTGGCGATGCAGATGACTATTACCCTCCTATTCCTCTTTCCAAC
GCCTACTAGCGCGCATCCTTTTGGAACGGACAAAGCTGGCATGGGTGTAC
GCTCGTCCTTGCATGTCGCATTGTCATCTTATCAGGAACAGCAGGTTGGT
GAGACGCATATAGCCCGCTCGAAGTTGCTGGACGACCACGTATTTCATGG
CACCACCACGTGCGCTTTTGTCTTCGATCACGGAATTTTGGTGGCTGTGG
ATTCCAGGGCAAGCATGGGTTCCTGGGCAAACTCTCAATGGGCACCATGG
TACTAGGCCATGATTCACAAGAGGGTTTCAGCATTTATTACGTCGACAAC
GACGGTACCCGAAGCAAAGGAAAACTCTTTGCCGTCGGCTCAGGTAGCAC
CTACGCATACAGCATCCTAGACGCGGGTTACCGGCCGGAAATGTCCGTGG
AGGAAGCAAAGGAATTGGGGTTACGCGCAATTCGCCACGCGACGTACCGA
GACGCGTTTTCGGGCGGGTTTGTCAATGTCTACCTGGTGCAGGCGTCGGG
CTGGCGGCGAATTGCCCGCGTGGATGGAGGATTTTTGTCGGTACCACCAT
TAAGGACAGGGGACGTAGGTGGGACAAGGAAAGAAATTGGGGTCAAGTAA
GCACGATTGTACGAGATAGAAAATGAAGGACAGCAATTAACGGTGAGGCG
GGCATCGAAGCTGTTGGCCAACAACATTGCGAGGGAGCTACATTGGCTCG
AGCGCCACGGAAAAGGTGCTGCCCGTCAGTCAGCATATTTTGGCAACCAT
GGCAGGCGGGGCAGCGGATTGTGCGTTCTGGATTCGGCATTTGGCGATGC
AGATGACTATTACCCTCCTATTCCTCTTTCCAACGCCTACTAGCGCGCAT
CCTTTTGGAACGGACAAAGCTGGCATGGGTGTACGCTCGTCCTTGCATGT
CGCATTGTCATCTTATCAGGAACAGCAGGTTGGTGAGACGCATATAGCCC
GCTCGAAGTTGCTGGACGACCACGTATTTCATGGCACCACCACGTGCGCT
TTTGTCTTCGATCACGGAATTTTGGTGGCTGTGGATTCCAGGGCAAGCAT
GGGTTCCTGGGCAAACTCTCAATGGGCACCATGGTACTAGGCCATGATTC
ACAAGAGGGTTTCAGCATTTATTACGTCGACAACGACGGTACCCGAAGCA
AAGGAAAACTCTTTGCCGTCGGCTCAGGTAGCACCTACGCATACAGCATC
CTAGACGCGGGTTACCGGCCGGAAATGTCCGTGGAGGAAGCAAAGGAATT
GGGGTTACGCGCAATTCGCCACGCGACGTACCGAGACGCGTTTTCGGGCG
GGTTTGTCAATGTCTACCTGGTGCAGGCGTCGGGCTGGCGGCGAATTGCC
CGCGTGGATGGAGGATTTTTGTCGGTACCACCATTAAGGACAGGGGACGT
AGGTGGGACAAGGAAAGAAATTGGGGTCAAGTAAGCACGATTGTACGAGA
TAGAAAATGAAGGACAGCAATTAACGGTGAGGCGGGCATCGAAGCTGTTG
GCCAACAACATTGCGAGGGAGCTACATTGGCTCGAGCGCCACGGAAAAGG
TGCTGCCCGTCAGTCAGCATATTTTGGCAACCATGGCAGGCGGGGCAGCG
GATTGTGCGTTCTGGATTCGGCATTTGGCGATGCAGATGACTATTACCCT
CCTATTCCTCTTTCCAACGCCTACTAGCGCGCATCCTTTTGGAACGGACA
AAGCTGGCATGGGTGTACGCTCGTCCTTGCATGTCGCATTGTCATCTTAT
CAGGAACAGCAGGTTGGTGAGACGCATATAGCCCGCTCGAAGTTGCTGGA
CGACCACGTATTTCATGGCACCACCACGTGCGCTTTTGTCTTCGATCACG
GAATTTTGGTGGCTGTGGATTCCAGGGCAAGCATGG
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Synonyms
Publications