jgi.p|Nanoce1779_2|218451, mRNA_8759 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|218451
Unique NamemRNA_8759
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1145
Alignment locationscaffold_28:56474..57748 -

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Properties
Property NameValue
TranscriptId218537
TrackFilteredModels2
ProteinId218451
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:56474..57748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|218451gene_8759Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|218451mRNA_8759-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8759CDS_8759Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8759 ID=mRNA_8759|Name=jgi.p|Nanoce1779_2|218451|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp
GTTTGAGCCGGGCCCTGGGTGAGACCGATCGCAGCGGCACATATTCATAT
GTCGAGAATGTAAGAAAAATGCAAGCTAGCACAGAACAGTGTCTATATCC
GATCAAACACCCTATTCACTTCTTCCTCCATCGATCCGCCTCAGCACAGG
CAAGCCTTTTCAGACTCATCACACTCCTCCGCGCCATCGTCTCTACCTCA
TCTCAATCCGAGCGTCATGACCCGATCGCACCACCATCACAACGGGTGCC
AGCACCAGCACCTTACCAGCAGCAGCAGCAGCAGCAAGGCCATGGCCACC
CTGATGCCATACTTTTGGGCGCGGCAGCGTTGGGCGCGTCCGTCAACCAC
TACACCCACCCACCGCGGCAGTCGACTCTCATCATTCATCAGCAAGAGCA
CCCCTCATCCCACCCCAATCCTCAAGACCAATATCACCCTCCCGAAGATG
CAAGCTACTCCTATTTAAGACGTCAGAGCCAACCTCCCCTTCGTCTTATC
AATTCTACCCGTCTCAACACCCGTCCCCCGGGCTGGCGGCTTCAACGGCA
TTGCGAAGTGTGTTTCGTGACCTTTGGTGTATTCAATGGTCGGCATCACT
GTCGAAACTGCGGGCGGTCTGTCTGTGGCATTCATTCCACGAAACGCTTG
CCGCTACCACATTGGGGGTTCTTGAATTATGTGAGAGTGTGTGATGAGTG
TCATGACGTGGTGATGAACTGTTTTCGAACGGGTGCGCCGTATCACCCAG
CTCTCCTCCCGGAGCACCCGCAGCATCAGCATTACCACCAGCAGCAAGTA
CCACAGGAAAGGGTGGTGTTTGGACAGCATTGGGAGGGTGGAGTGACGAC
GATGGCTTATACTCACCCTTATCCACCCATGGGTATGGGGATGGAGGGAG
GGATAGGGGTAAGAATGGTTGGGGGAGGTTTGAATGGAAATGCCAATGTC
TGTGTACCTGTTTCCGGTCAATACGGGCAGCAGATTACAGCGTTGCCTTA
TGCGGAGCCGGTGGCACAGGGCGCGGCGCCTAAAGATATGTGGATGACTG
CGAGCGTACAGCAGCAGGAGCAGGCGCAGCAGCATCCCGACTATCCAACA
CAGCCATCAGCGCCTCCGATGCCGGGGGGAGACTAAAAAAAGATG
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protein sequence of jgi.p|Nanoce1779_2|218451

>mRNA_8759-protein ID=mRNA_8759-protein|Name=jgi.p|Nanoce1779_2|218451|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MQASTEQCLYPIKHPIHFFLHRSASAQASLFRLITLLRAIVSTSSQSERH
DPIAPPSQRVPAPAPYQQQQQQQGHGHPDAILLGAAALGASVNHYTHPPR
QSTLIIHQQEHPSSHPNPQDQYHPPEDASYSYLRRQSQPPLRLINSTRLN
TRPPGWRLQRHCEVCFVTFGVFNGRHHCRNCGRSVCGIHSTKRLPLPHWG
FLNYVRVCDECHDVVMNCFRTGAPYHPALLPEHPQHQHYHQQQVPQERVV
FGQHWEGGVTTMAYTHPYPPMGMGMEGGIGVRMVGGGLNGNANVCVPVSG
QYGQQITALPYAEPVAQGAAPKDMWMTASVQQQEQAQQHPDYPTQPSAPP
MPGGD*
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mRNA from alignment at scaffold_28:56474..57748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8759 ID=mRNA_8759|Name=jgi.p|Nanoce1779_2|218451|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp|location=Sequence derived from alignment at scaffold_28:56474..57748- (Nannochloropsis oceanica)
GTTTGAGCCGGGCCCTGGGTGAGACCGATCGCAGCGGCACATATTCATAT
GTCGAGAATGTAAGAAAAATGCAAGCTAGCACAGAACAGTGTCTATATCC
GATCAAACACCCTATTCACTTCTTCCTCCATCGATCCGCCTCAGCACAGG
CAAGCCTTTTCAGACTCATCACACTCCTCCGCGCCATCGTCTCTACCTCA
TCTCAATCCGAGCGTCATGACCCGATCGCACCACCATCACAACGGGTGCC
AGCACCAGCACCTTACCAGCAGCAGCAGCAGCAGCAAGGCCATGGCCACC
CTGATGCCATACTTTTGGGCGCGGCAGCGTTGGGCGCGTCCGGTATGTAT
GTGACAAAGCGGCGGTGATTTATACCTTGTCCTCTTTAAGGACCGTCGTT
GGCACCTCTCACGACAAACACCTACAATTTTTATATGACTCCCTCTCTTC
CTTCTCATTACAACACACACAGTCAACCACTACACCCACCCACCGCGGCA
GTCGACTCTCATCATTCATCAGCAAGAGCACCCCTCATCCCACCCCAATC
CTCAAGACCAATATCACCCTCCCGAAGATGCAAGCTACTCCTATTTAAGA
CGTCAGAGCCAACCTCCCCTTCGTCTTATCAATTCTACCCGTCTCAACAC
CCGTCCCCCGGGCTGGCGGCTTCAACGGCATTGCGAAGTGTGTTTCGTGA
CCTTTGGTGTATTCAATGGTCGGCATCACTGTCGAAACTGCGGGCGGTCT
GTCTGTGGCATTCATTCCACGAAACGCTTGCCGCTACCACATTGGGGGTT
CTTGAATTATGTGAGAGTGTGTGATGAGTGTCATGACGTGGTGATGAACT
GTTTTCGAACGGGTGCGCCGTATCACCCAGCTCTCCTCCCGGAGCACCCG
CAGCATCAGCATTACCACCAGCAGCAAGTACCACAGGAAAGGGTGGTGTT
TGGACAGCATTGGGAGGGTGGAGTGACGACGATGGCTTATACTCACCCTT
ATCCACCCATGGGTATGGGGATGGAGGGAGGGATAGGGGTAAGAATGGTT
GGGGGAGGTTTGAATGGAAATGCCAATGTCTGTGTACCTGTTTCCGGTCA
ATACGGGCAGCAGATTACAGCGTTGCCTTATGCGGAGCCGGTGGCACAGG
GCGCGGCGCCTAAAGATATGTGGATGACTGCGAGCGTACAGCAGCAGGAG
CAGGCGCAGCAGCATCCCGACTATCCAACACAGCCATCAGCGCCTCCGAT
GCCGGGGGGAGACTAAAAAAAGATG
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Coding sequence (CDS) from alignment at scaffold_28:56474..57748-

>mRNA_8759 ID=mRNA_8759|Name=jgi.p|Nanoce1779_2|218451|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_28:56474..57748- (Nannochloropsis oceanica)
TCAACCACTACACCCACCCACCGCGGCAGTCGACTCTCATCATTCATCAG
CAAGAGCACCCCTCATCCCACCCCAATCCTCAAGACCAATATCACCCTCC
CGAAGATGCAAGCTACTCCTATTTAAGACGTCAGAGCCAACCTCCCCTTC
GTCTTATCAATTCTACCCGTCTCAACACCCGTCCCCCGGGCTGGCGGCTT
CAACGGCATTGCGAAGTGTGTTTCGTGACCTTTGGTGTATTCAATGGTCG
GCATCACTGTCGAAACTGCGGGCGGTCTGTCTGTGGCATTCATTCCACGA
AACGCTTGCCGCTACCACATTGGGGGTTCTTGAATTATGTGAGAGTGTGT
GATGAGTGTCATGACGTGGTGATGAACTGTTTTCGAACGGGTGCGCCGTA
TCACCCAGCTCTCCTCCCGGAGCACCCGCAGCATCAGCATTACCACCAGC
AGCAAGTACCACAGGAAAGGGTGGTGTTTGGACAGCATTGGGAGGGTGGA
GTGACGACGATGGCTTATACTCACCCTTATCCACCCATGGGTATGGGGAT
GGAGGGAGGGATAGGGGTAAGAATGGTTGGGGGAGGTTTGAATGGAAATG
CCAATGTCTGTGTACCTGTTTCCGGTCAATACGGGCAGCAGATTACAGCG
TTGCCTTATGCGGAGCCGGTGGCACAGGGCGCGGCGCCTAAAGATATGTG
GATGACTGCGAGCGTACAGCAGCAGGAGCAGGCGCAGCAGCATCCCGACT
ATCCAACACAGCCATCAGCGCCTCCGATGCCGGGGGGAGACTAAATGCAA
GCTAGCACAGAACAGTGTCTATATCCGATCAAACACCCTATTCACTTCTT
CCTCCATCGATCCGCCTCAGCACAGGCAAGCCTTTTCAGACTCATCACAC
TCCTCCGCGCCATCGTCTCTACCTCATCTCAATCCGAGCGTCATGACCCG
ATCGCACCACCATCACAACGGGTGCCAGCACCAGCACCTTACCAGCAGCA
GCAGCAGCAGCAAGGCCATGGCCACCCTGATGCCATACTTTTGGGCGCGG
CAGCGTTGGGCGCGTCCGTCAACCACTACACCCACCCACCGCGGCAGTCG
ACTCTCATCATTCATCAGCAAGAGCACCCCTCATCCCACCCCAATCCTCA
AGACCAATATCACCCTCCCGAAGATGCAAGCTACTCCTATTTAAGACGTC
AGAGCCAACCTCCCCTTCGTCTTATCAATTCTACCCGTCTCAACACCCGT
CCCCCGGGCTGGCGGCTTCAACGGCATTGCGAAGTGTGTTTCGTGACCTT
TGGTGTATTCAATGGTCGGCATCACTGTCGAAACTGCGGGCGGTCTGTCT
GTGGCATTCATTCCACGAAACGCTTGCCGCTACCACATTGGGGGTTCTTG
AATTATGTGAGAGTGTGTGATGAGTGTCATGACGTGGTGATGAACTGTTT
TCGAACGGGTGCGCCGTATCACCCAGCTCTCCTCCCGGAGCACCCGCAGC
ATCAGCATTACCACCAGCAGCAAGTACCACAGGAAAGGGTGGTGTTTGGA
CAGCATTGGGAGGGTGGAGTGACGACGATGGCTTATACTCACCCTTATCC
ACCCATGGGTATGGGGATGGAGGGAGGGATAGGGGTAAGAATGGTTGGGG
GAGGTTTGAATGGAAATGCCAATGTCTGTGTACCTGTTTCCGGTCAATAC
GGGCAGCAGATTACAGCGTTGCCTTATGCGGAGCCGGTGGCACAGGGCGC
GGCGCCTAAAGATATGTGGATGACTGCGAGCGTACAGCAGCAGGAGCAGG
CGCAGCAGCATCCCGACTATCCAACACAGCCATCAGCGCCTCCGATGCCG
GGGGGAGACTAAATGCAAGCTAGCACAGAACAGTGTCTATATCCGATCAA
ACACCCTATTCACTTCTTCCTCCATCGATCCGCCTCAGCACAGGCAAGCC
TTTTCAGACTCATCACACTCCTCCGCGCCATCGTCTCTACCTCATCTCAA
TCCGAGCGTCATGACCCGATCGCACCACCATCACAACGGGTGCCAGCACC
AGCACCTTACCAGCAGCAGCAGCAGCAGCAAGGCCATGGCCACCCTGATG
CCATACTTTTGGGCGCGGCAGCGTTGGGCGCGTCCG
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Synonyms
Publications