jgi.p|Nanoce1779_2|642105, mRNA_8758 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642105
Unique NamemRNA_8758
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1488
Alignment locationscaffold_28:54275..55762 -

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Properties
Property NameValue
TranscriptId642191
TrackFilteredModels2
ProteinId642105
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:54275..55762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642105gene_8758Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8758CDS_8758Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642105mRNA_8758-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8758 ID=mRNA_8758|Name=jgi.p|Nanoce1779_2|642105|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
ATGACCCTGGCAACTGTCCTAGACATCGGGGGGACCGATTCCCGGGCCAC
TAGTATCCCTTCGGAACAGATCGTCTCAGAGCATGGCAATCACCAAGTAT
GCAATGGACACAGCAGCCATGACGACGACGTCAAGACCGCTGCTCTTCCC
ACTGGATTGGAAACCGATACCAGCACCAACGGCAGGGACCATGTGCGAAG
CAGCAGCCACGTCAACAACGCCACGACTGCTGCTCTCCCCACAGAATTGG
AGGCTGGTGCCAGCAATAAGCTCTCCGCGCCTGTCCGGATCAGCATTGCC
TTGCCTCCTGTAGATTCCAAGCTCTCTGTGTCCCATGGAGGAGTCGGGAA
TGATCTCTCCGGGAGTGATATCAACTGCTCCTTTGAGAGCATGTCGGCCT
CGGCCGTCTCTTCTGCCTCTTCTTCCTTTTCCTCCAATTCCTCCTTCTCA
TCCTATGACTCCTTTGTCTCGGCCACTGCCGACATCCTAGAGGCCATGGA
AATGATCCCGCCACTTCCAAAAAGCAGCAAAAAGAAGGGAAGGAAAGAAA
AGCAAACTCAGAATAAAGTGACGATGACGAACGATTGTGTGAAATCTCCT
CCTCTTGCTGCTACCAGTTTTGAGGCAAGTAATGGCAGGAGTCAGGAGCA
GCAGCATCGGGCAGAGGAGGAAGGAAAATCCATCGAGGGAGAAGAGCTGG
AAATGAGGAAGAAGGATGGCAAGGAGGGGAGCAGGAAGGATAAGAGGAGG
GAGGCCTCGGAGGAGGACTTCAAGGAGGAGAGACGTCAAAAAGAAGAACT
CATCATCAACGGCAGCAGCAATTGCACGCGAGGAGCGGAGACAACGATAA
AAAAGCGCAGTGGATGCAGTGAGATGAGAGAGAAAAGCGTGAATGGTATC
TCTTCAGAAACTGCAGCAGCAGTCTCAGCAGCAGCAGTAGCAGCCGCAGC
CGCAGCCGCAGCAGCCACAGCAGCAGAAGAAGCAGCAGAAGCAGCAGCAG
CCACCACCACCATCACTGACATTAAAAAGACTCACGGAACACCAAGCAGT
ACCAGCAACAATCAAAGGATGGGCCTCTTATTGGATCCCCCCTCCTCCTC
TCATGCCTCCTCCATGTTCGCCTCCCCCTCACCCATCTTCCCTTCGTCCA
TTCTTTCCTCCTCCTCCTCCCCCAACTCCCCTACGGATGACGCCGACCTA
CCTTCCTCTAACACCATAACTTTCCAACAATTAAAACGAGGAGGGGGGTA
TGAAGGGATAGAGGAGGGCATGTACGAAGATGAAGGAGCGGGGGGATGTA
AAAGAGTCCTTGGGTTGGTGGAGGAGGAAGAGGGCGTGTTCGAGGTACCT
ACATTCAACTCCTTCATGTCGAGAGAGGCAGCATTCAAGAGAGAGGCCGT
TAGGGTGGGATGGAGGGTGTTGGCGCGGGTGGTGGTGGGGGTGGGGTTGG
CTGGCATTGTGGCGTGGGTGTTTATGATGTATAGATGA
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protein sequence of jgi.p|Nanoce1779_2|642105

>mRNA_8758-protein ID=mRNA_8758-protein|Name=jgi.p|Nanoce1779_2|642105|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MTLATVLDIGGTDSRATSIPSEQIVSEHGNHQVCNGHSSHDDDVKTAALP
TGLETDTSTNGRDHVRSSSHVNNATTAALPTELEAGASNKLSAPVRISIA
LPPVDSKLSVSHGGVGNDLSGSDINCSFESMSASAVSSASSSFSSNSSFS
SYDSFVSATADILEAMEMIPPLPKSSKKKGRKEKQTQNKVTMTNDCVKSP
PLAATSFEASNGRSQEQQHRAEEEGKSIEGEELEMRKKDGKEGSRKDKRR
EASEEDFKEERRQKEELIINGSSNCTRGAETTIKKRSGCSEMREKSVNGI
SSETAAAVSAAAVAAAAAAAAATAAEEAAEAAAATTTITDIKKTHGTPSS
TSNNQRMGLLLDPPSSSHASSMFASPSPIFPSSILSSSSSPNSPTDDADL
PSSNTITFQQLKRGGGYEGIEEGMYEDEGAGGCKRVLGLVEEEEGVFEVP
TFNSFMSREAAFKREAVRVGWRVLARVVVGVGLAGIVAWVFMMYR*
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mRNA from alignment at scaffold_28:54275..55762-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8758 ID=mRNA_8758|Name=jgi.p|Nanoce1779_2|642105|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp|location=Sequence derived from alignment at scaffold_28:54275..55762- (Nannochloropsis oceanica)
ATGACCCTGGCAACTGTCCTAGACATCGGGGGGACCGATTCCCGGGCCAC
TAGTATCCCTTCGGAACAGATCGTCTCAGAGCATGGCAATCACCAAGTAT
GCAATGGACACAGCAGCCATGACGACGACGTCAAGACCGCTGCTCTTCCC
ACTGGATTGGAAACCGATACCAGCACCAACGGCAGGGACCATGTGCGAAG
CAGCAGCCACGTCAACAACGCCACGACTGCTGCTCTCCCCACAGAATTGG
AGGCTGGTGCCAGCAATAAGCTCTCCGCGCCTGTCCGGATCAGCATTGCC
TTGCCTCCTGTAGATTCCAAGCTCTCTGTGTCCCATGGAGGAGTCGGGAA
TGATCTCTCCGGGAGTGATATCAACTGCTCCTTTGAGAGCATGTCGGCCT
CGGCCGTCTCTTCTGCCTCTTCTTCCTTTTCCTCCAATTCCTCCTTCTCA
TCCTATGACTCCTTTGTCTCGGCCACTGCCGACATCCTAGAGGCCATGGA
AATGATCCCGCCACTTCCAAAAAGCAGCAAAAAGAAGGGAAGGAAAGAAA
AGCAAACTCAGAATAAAGTGACGATGACGAACGATTGTGTGAAATCTCCT
CCTCTTGCTGCTACCAGTTTTGAGGCAAGTAATGGCAGGAGTCAGGAGCA
GCAGCATCGGGCAGAGGAGGAAGGAAAATCCATCGAGGGAGAAGAGCTGG
AAATGAGGAAGAAGGATGGCAAGGAGGGGAGCAGGAAGGATAAGAGGAGG
GAGGCCTCGGAGGAGGACTTCAAGGAGGAGAGACGTCAAAAAGAAGAACT
CATCATCAACGGCAGCAGCAATTGCACGCGAGGAGCGGAGACAACGATAA
AAAAGCGCAGTGGATGCAGTGAGATGAGAGAGAAAAGCGTGAATGGTATC
TCTTCAGAAACTGCAGCAGCAGTCTCAGCAGCAGCAGTAGCAGCCGCAGC
CGCAGCCGCAGCAGCCACAGCAGCAGAAGAAGCAGCAGAAGCAGCAGCAG
CCACCACCACCATCACTGACATTAAAAAGACTCACGGAACACCAAGCAGT
ACCAGCAACAATCAAAGGATGGGCCTCTTATTGGATCCCCCCTCCTCCTC
TCATGCCTCCTCCATGTTCGCCTCCCCCTCACCCATCTTCCCTTCGTCCA
TTCTTTCCTCCTCCTCCTCCCCCAACTCCCCTACGGATGACGCCGACCTA
CCTTCCTCTAACACCATAACTTTCCAACAATTAAAACGAGGAGGGGGGTA
TGAAGGGATAGAGGAGGGCATGTACGAAGATGAAGGAGCGGGGGGATGTA
AAAGAGTCCTTGGGTTGGTGGAGGAGGAAGAGGGCGTGTTCGAGGTACCT
ACATTCAACTCCTTCATGTCGAGAGAGGCAGCATTCAAGAGAGAGGCCGT
TAGGGTGGGATGGAGGGTGTTGGCGCGGGTGGTGGTGGGGGTGGGGTTGG
CTGGCATTGTGGCGTGGGTGTTTATGATGTATAGATGA
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Coding sequence (CDS) from alignment at scaffold_28:54275..55762-

>mRNA_8758 ID=mRNA_8758|Name=jgi.p|Nanoce1779_2|642105|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_28:54275..55762- (Nannochloropsis oceanica)
ATGACCCTGGCAACTGTCCTAGACATCGGGGGGACCGATTCCCGGGCCAC
TAGTATCCCTTCGGAACAGATCGTCTCAGAGCATGGCAATCACCAAGTAT
GCAATGGACACAGCAGCCATGACGACGACGTCAAGACCGCTGCTCTTCCC
ACTGGATTGGAAACCGATACCAGCACCAACGGCAGGGACCATGTGCGAAG
CAGCAGCCACGTCAACAACGCCACGACTGCTGCTCTCCCCACAGAATTGG
AGGCTGGTGCCAGCAATAAGCTCTCCGCGCCTGTCCGGATCAGCATTGCC
TTGCCTCCTGTAGATTCCAAGCTCTCTGTGTCCCATGGAGGAGTCGGGAA
TGATCTCTCCGGGAGTGATATCAACTGCTCCTTTGAGAGCATGTCGGCCT
CGGCCGTCTCTTCTGCCTCTTCTTCCTTTTCCTCCAATTCCTCCTTCTCA
TCCTATGACTCCTTTGTCTCGGCCACTGCCGACATCCTAGAGGCCATGGA
AATGATCCCGCCACTTCCAAAAAGCAGCAAAAAGAAGGGAAGGAAAGAAA
AGCAAACTCAGAATAAAGTGACGATGACGAACGATTGTGTGAAATCTCCT
CCTCTTGCTGCTACCAGTTTTGAGGCAAGTAATGGCAGGAGTCAGGAGCA
GCAGCATCGGGCAGAGGAGGAAGGAAAATCCATCGAGGGAGAAGAGCTGG
AAATGAGGAAGAAGGATGGCAAGGAGGGGAGCAGGAAGGATAAGAGGAGG
GAGGCCTCGGAGGAGGACTTCAAGGAGGAGAGACGTCAAAAAGAAGAACT
CATCATCAACGGCAGCAGCAATTGCACGCGAGGAGCGGAGACAACGATAA
AAAAGCGCAGTGGATGCAGTGAGATGAGAGAGAAAAGCGTGAATGGTATC
TCTTCAGAAACTGCAGCAGCAGTCTCAGCAGCAGCAGTAGCAGCCGCAGC
CGCAGCCGCAGCAGCCACAGCAGCAGAAGAAGCAGCAGAAGCAGCAGCAG
CCACCACCACCATCACTGACATTAAAAAGACTCACGGAACACCAAGCAGT
ACCAGCAACAATCAAAGGATGGGCCTCTTATTGGATCCCCCCTCCTCCTC
TCATGCCTCCTCCATGTTCGCCTCCCCCTCACCCATCTTCCCTTCGTCCA
TTCTTTCCTCCTCCTCCTCCCCCAACTCCCCTACGGATGACGCCGACCTA
CCTTCCTCTAACACCATAACTTTCCAACAATTAAAACGAGGAGGGGGGTA
TGAAGGGATAGAGGAGGGCATGTACGAAGATGAAGGAGCGGGGGGATGTA
AAAGAGTCCTTGGGTTGGTGGAGGAGGAAGAGGGCGTGTTCGAGGTACCT
ACATTCAACTCCTTCATGTCGAGAGAGGCAGCATTCAAGAGAGAGGCCGT
TAGGGTGGGATGGAGGGTGTTGGCGCGGGTGGTGGTGGGGGTGGGGTTGG
CTGGCATTGTGGCGTGGGTGTTTATGATGTATAGATGA
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Synonyms
Publications