jgi.p|Nanoce1779_2|603883, mRNA_8756 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603883
Unique NamemRNA_8756
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length559
Alignment locationscaffold_28:53192..53750 -

Link to JBrowse

Properties
Property NameValue
TranscriptId603969
TrackFilteredModels2
ProteinId603883
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:53192..53750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603883gene_8756Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603883mRNA_8756-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8756CDS_8756Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8756 ID=mRNA_8756|Name=jgi.p|Nanoce1779_2|603883|organism=Nannochloropsis oceanica|type=mRNA|length=559bp
TGAGAGAAATATTTCATTATGTCGTCCGTCCTCGTGCGTGTGCTTTTGTT
TTCTTTTCCTCCTTTTCTTTCCACTCGAACGTTGATTTTTATCGTTTTGT
GTTCAGACACACTATACATAAGATATTCACATTTAAATACATGCACACAA
ATACAGAGCTCTCGCTACTACTTTTCTCGTTTTTCTTTCGCTCTTCTCTT
ACCTCAATCGCTTCTCCCTCCCTCCCTACCTCCTTCCCTCTCCTTCCGAC
AATGAGTTCGTGGGAGACAACGAGCACTTTTCCACTTTTTTTTATGGGTG
CTGCTGCTGCTAGTGCTGCTGCTAGTGCTGCTGCTGCTAGAGCTGCTGCG
GCTGCTGTTCCTCCTGCGACTGCTACTTTTTCGCTTACTACTACCCCCCA
TCTGCTTCTTCTCCTTCTGCTTCTTCCTCCTCTTTTTCTCCTTCCTCTTC
TCCTTTCTCCTCCGCTTTCGCTTCCGTCTATCCTCTTCCTCCTCTTCCTC
CCTCTCCTCCTCCTTATCCACCACACTTCCTCCCTCCCTAACCACCCCCT
GCCGCAAAC
back to top

protein sequence of jgi.p|Nanoce1779_2|603883

>mRNA_8756-protein ID=mRNA_8756-protein|Name=jgi.p|Nanoce1779_2|603883|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MSSVLVRVLLFSFPPFLSTRTLIFIVLCSDTLYIRYSHLNTCTQIQSSRY
YFSRFSFALLLPQSLLPPSLPPSLSFRQ*
back to top

mRNA from alignment at scaffold_28:53192..53750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8756 ID=mRNA_8756|Name=jgi.p|Nanoce1779_2|603883|organism=Nannochloropsis oceanica|type=mRNA|length=559bp|location=Sequence derived from alignment at scaffold_28:53192..53750- (Nannochloropsis oceanica)
TGAGAGAAATATTTCATTATGTCGTCCGTCCTCGTGCGTGTGCTTTTGTT
TTCTTTTCCTCCTTTTCTTTCCACTCGAACGTTGATTTTTATCGTTTTGT
GTTCAGACACACTATACATAAGATATTCACATTTAAATACATGCACACAA
ATACAGAGCTCTCGCTACTACTTTTCTCGTTTTTCTTTCGCTCTTCTCTT
ACCTCAATCGCTTCTCCCTCCCTCCCTACCTCCTTCCCTCTCCTTCCGAC
AATGAGTTCGTGGGAGACAACGAGCACTTTTCCACTTTTTTTTATGGGTG
CTGCTGCTGCTAGTGCTGCTGCTAGTGCTGCTGCTGCTAGAGCTGCTGCG
GCTGCTGTTCCTCCTGCGACTGCTACTTTTTCGCTTACTACTACCCCCCA
TCTGCTTCTTCTCCTTCTGCTTCTTCCTCCTCTTTTTCTCCTTCCTCTTC
TCCTTTCTCCTCCGCTTTCGCTTCCGTCTATCCTCTTCCTCCTCTTCCTC
CCTCTCCTCCTCCTTATCCACCACACTTCCTCCCTCCCTAACCACCCCCT
GCCGCAAAC
back to top

Coding sequence (CDS) from alignment at scaffold_28:53192..53750-

>mRNA_8756 ID=mRNA_8756|Name=jgi.p|Nanoce1779_2|603883|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_28:53192..53750- (Nannochloropsis oceanica)
ATGTCGTCCGTCCTCGTGCGTGTGCTTTTGTTTTCTTTTCCTCCTTTTCT
TTCCACTCGAACGTTGATTTTTATCGTTTTGTGTTCAGACACACTATACA
TAAGATATTCACATTTAAATACATGCACACAAATACAGAGCTCTCGCTAC
TACTTTTCTCGTTTTTCTTTCGCTCTTCTCTTACCTCAATCGCTTCTCCC
TCCCTCCCTACCTCCTTCCCTCTCCTTCCGACAATGA
back to top
Synonyms
Publications