jgi.p|Nanoce1779_2|218414, mRNA_8753 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|218414
Unique NamemRNA_8753
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1295
Alignment locationscaffold_28:43587..45221 -

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Properties
Property NameValue
TranscriptId218500
TrackFilteredModels2
ProteinId218414
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:43587..45221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|218414gene_8753Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|218414mRNA_8753-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8753CDS_8753Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8753 ID=mRNA_8753|Name=jgi.p|Nanoce1779_2|218414|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp
CTGTGCACCGTGTACCCAGCAACAGAAAAGAATATGACCCACTCTAACAG
TCAATCCATCATTCCACACGTATAAACGCATGCAGCTCACAGAGTTAGCG
GCAGTGACAGGGTCTTCAGGACGAACGAGAGCCGAGCCGGTGTGGGAATT
TTCGAGTCTTACTTCCCATCCTCAAGCAACAACCCAGGGCCTCCGTCTCC
TCGCACCCACAGCATCAATTTACAATAGCTTCCGAGCAGCAGCTCCGACA
ACCATGGATAACAATATGTACATGCAACAGCTGCAGCAGCAACAGCAGCA
ACAACAACAACAACAACAACAACAACAACAGCAGCAACAGCATCAGCAAC
AGCCCCCCCAAGAGTTCGACGCTATGACATCCTCCCAACAACAACAGTCG
CAATACCTCCAACAGCAACAACAGCAACAACAGCAACAACAACACCTGAT
GCACGGCACGGGTGCTTATGGCCAGCCCCCCCGTCAACCTTTCAATCCTC
CTTTCCCGGCCCTCAGTGGCGCCGGCTCCCCAATCCCATTCCTCCTGCAC
TCCGCCCCTCCTCCCCCTCCTTCTGCCTCTTCCTCCGCCCCTCCCAGTCA
ATCCCAGCAATCAAATTCCAGAAACATCACCCCTCCCGCGATGACGCCGG
AGGCCCTGGCGGTGTTTACCCAGAACATGGACATGAGTAGTTTGCAGGCA
CAAGCGGCGGCCTACTACCAATTGATGGCTTCCCACGGTTTGCCTGTCCC
TCACCCCTATGGTTTTGCTCCTGGGCAGGAAGGAGGGGGGATAGGAGGAG
GAGTGGGGGGAGGGTTTCCTATGCCACCTGTAGCGATGGGTGGGGGGCCT
TTGCACCAGGAGGGGGAAAGAGGGGTAGGACGAGGAAAAGGAAAAGCAGC
GGCAGGAGGAGGTACCGGTGGTGGTGAAAAGGCGGGACCGAAGGGGAAGA
AGAGCGTGAGGAAATGGACAGCAGAAGAAGACGCAGAGATGGTGCGGCTG
GTATTGGAGTTGGGCACGAAACAATGGGGTCAGATCGGGTTGAATCTAGG
TGGGAGGAGCGGAAAGCAGTGTAGAGAGAGGTGGCACAATCAGGTGGCTT
GACCCGAACATAAAGAAGGAGGCCTGGTCAGCGGAGGAGGAGATGATATT
GCAGCAGAAGCACTCGGAATTTGGAAACCGTTGGGCGGAAATAGCGCGCT
ATCTGCCGGGGAGGACGGACAATGCGATTAAGAACCATTACCACAACGCC
CGGCGTCGGATCAGCAAAGCCAAAGGATCCACCGATAGCGACCCT
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protein sequence of jgi.p|Nanoce1779_2|218414

>mRNA_8753-protein ID=mRNA_8753-protein|Name=jgi.p|Nanoce1779_2|218414|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MQLTELAAVTGSSGRTRAEPVWEFSSLTSHPQATTQGLRLLAPTASIYNS
FRAAAPTTMDNNMYMQQLQQQQQQQQQQQQQQQQQQQHQQQPPQEFDAMT
SSQQQQSQYLQQQQQQQQQQQHLMHGTGAYGQPPRQPFNPPFPALSGAGS
PIPFLLHSAPPPPPSASSSAPPSQSQQSNSRNITPPAMTPEALAVFTQNM
DMSSLQAQAAAYYQLMASHGLPVPHPYGFAPGQEGGGIGGGVGGGFPMPP
VAMGGGPLHQEGERGVGRGKGKAAAGGGTGGGEKAGPKGKKSVRKWTAEE
DAEMVRLVLELGTKQWGQIGLNLGGRSGKQCRERWHNQVA*
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mRNA from alignment at scaffold_28:43587..45221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8753 ID=mRNA_8753|Name=jgi.p|Nanoce1779_2|218414|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp|location=Sequence derived from alignment at scaffold_28:43587..45221- (Nannochloropsis oceanica)
CTGTGCACCGTGTACCCAGCAACAGAAAAGAATATGACCCACTCTAACAG
TCAATCCATCATTCCACACGTATAAACGCATGCAGCTCACAGAGTTAGCG
GCAGTGACAGGGTCTTCAGGACGAACGAGAGCCGAGCCGGTGTGGGAATT
TTCGAGTCTTACTTCCCATCCTCAAGCAACAACCCAGGGCCTCCGTCTCC
TCGCACCCACAGCATCAATTTACAATAGCTTCCGAGCAGCAGCTCCGACA
ACCATGGATAACAATATGTACATGCAACAGCTGCAGCAGCAACAGCAGCA
ACAACAACAACAACAACAACAACAACAACAGCAGCAACAGCATCAGCAAC
AGCCCCCCCAAGAGTTCGACGCTATGACATCCTCCCAACAACAACAGTCG
CAATACCTCCAACAGCAACAACAGCAACAACAGCAACAACAACACCTGAT
GCACGGCACGGGTGCTTATGGCCAGCCCCCCCGTCAACCTTTCAATCCTC
CTTTCCCGGCCCTCAGTGGCGCCGGCTCCCCAATCCCATTCCTCCTGCAC
TCCGCCCCTCCTCCCCCTCCTTCTGCCTCTTCCTCCGCCCCTCCCAGTCA
ATCCCAGCAATCAAATTCCAGAAACATCACCCCTCCCGCGATGACGCCGG
AGGCCCTGGCGGTGTTTACCCAGAACATGGACATGAGTAGTTTGCAGGCA
CAAGCGGCGGCCTACTACCAATTGATGGCTTCCCACGGTTTGCCTGTCCC
TCACCCCTATGGTTTTGCTCCTGGGCAGGAAGGAGGGGGGATAGGAGGAG
GAGTGGGGGGAGGGTTTCCTATGCCACCTGTAGCGATGGGTGGGGGGCCT
TTGCACCAGGAGGGGGAAAGAGGGGTAGGACGAGGAAAAGGAAAAGCAGC
GGCAGGAGGAGGTACCGGTGGTGGTGAAAAGGCGGGACCGAAGGGGAAGA
AGAGCGTGAGGAAATGGACAGCAGAAGAAGACGCAGAGATGGTGCGGCTG
GTATTGGAGTTGGGCACGAAACAATGGGGTCAGATCGGGTTGAATCTAGG
TGGGAGGAGCGGAAAGCAGTGTAGAGAGAGGTGGCACAATCAGGTGGGTT
CCTCTGCCCTTTCTACCTCCCTCCCTCCCTTCCCCCCTCCCTGCCTTCAT
CAAAGTTGACTTGATACAAAACTTTTACTCTTACCGCGTCTTCCCTCCTT
CTCTTCCTCCCTCCCTCCCTCCCTCCCTAGCTTGACCCGAACATAAAGAA
GGAGGCCTGGTCAGCGGAGGAGGAGATGATATTGCAGCAGAAGCACTCGG
AATTTGGAAACCGTTGGGCGGAAATAGCGCGCTATCTGCCGGGGAGGACG
GACAATGCGATTAAGGTGGAAAGGGAGGGAAGGAAGGAGGGGGGGAGGGA
GGACATGCAGTTGTGGGGGAGAGGCGGCATGCATGTGTGCTTGGTGCTTG
TGGGAACCTTCCTCCTTGCCATGGAAAACCTACCCGCATTCGTTCACAGT
TTTCATCACCTTCTCTTCCCTCCCTCCCTCCTTATTTTCGTTCTCTTCAT
TCTTCCTCCCTGTCGTACACAGAACCATTACCACAACGCCCGGCGTCGGA
TCAGCAAAGCCAAAGGATCCACCGATAGCGACCCT
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Coding sequence (CDS) from alignment at scaffold_28:43587..45221-

>mRNA_8753 ID=mRNA_8753|Name=jgi.p|Nanoce1779_2|218414|organism=Nannochloropsis oceanica|type=CDS|length=2046bp|location=Sequence derived from alignment at scaffold_28:43587..45221- (Nannochloropsis oceanica)
CTTGAATGCAGCTCACAGAGTTAGCGGCAGTGACAGGGTCTTCAGGACGA
ACGAGAGCCGAGCCGGTGTGGGAATTTTCGAGTCTTACTTCCCATCCTCA
AGCAACAACCCAGGGCCTCCGTCTCCTCGCACCCACAGCATCAATTTACA
ATAGCTTCCGAGCAGCAGCTCCGACAACCATGGATAACAATATGTACATG
CAACAGCTGCAGCAGCAACAGCAGCAACAACAACAACAACAACAACAACA
ACAACAGCAGCAACAGCATCAGCAACAGCCCCCCCAAGAGTTCGACGCTA
TGACATCCTCCCAACAACAACAGTCGCAATACCTCCAACAGCAACAACAG
CAACAACAGCAACAACAACACCTGATGCACGGCACGGGTGCTTATGGCCA
GCCCCCCCGTCAACCTTTCAATCCTCCTTTCCCGGCCCTCAGTGGCGCCG
GCTCCCCAATCCCATTCCTCCTGCACTCCGCCCCTCCTCCCCCTCCTTCT
GCCTCTTCCTCCGCCCCTCCCAGTCAATCCCAGCAATCAAATTCCAGAAA
CATCACCCCTCCCGCGATGACGCCGGAGGCCCTGGCGGTGTTTACCCAGA
ACATGGACATGAGTAGTTTGCAGGCACAAGCGGCGGCCTACTACCAATTG
ATGGCTTCCCACGGTTTGCCTGTCCCTCACCCCTATGGTTTTGCTCCTGG
GCAGGAAGGAGGGGGGATAGGAGGAGGAGTGGGGGGAGGGTTTCCTATGC
CACCTGTAGCGATGGGTGGGGGGCCTTTGCACCAGGAGGGGGAAAGAGGG
GTAGGACGAGGAAAAGGAAAAGCAGCGGCAGGAGGAGGTACCGGTGGTGG
TGAAAAGGCGGGACCGAAGGGGAAGAAGAGCGTGAGGAAATGGACAGCAG
AAGAAGACGCAGAGATGGTGCGGCTGGTATTGGAGTTGGGCACGAAACAA
TGGGGTCAGATCGGGTTGAATCTAGGTGGGAGGAGCGGAAAGCAGTGTAG
AGAGAGGTGGCACAATCAGGTGGCTTGAATGCAGCTCACAGAGTTAGCGG
CAGTGACAGGGTCTTCAGGACGAACGAGAGCCGAGCCGGTGTGGGAATTT
TCGAGTCTTACTTCCCATCCTCAAGCAACAACCCAGGGCCTCCGTCTCCT
CGCACCCACAGCATCAATTTACAATAGCTTCCGAGCAGCAGCTCCGACAA
CCATGGATAACAATATGTACATGCAACAGCTGCAGCAGCAACAGCAGCAA
CAACAACAACAACAACAACAACAACAACAGCAGCAACAGCATCAGCAACA
GCCCCCCCAAGAGTTCGACGCTATGACATCCTCCCAACAACAACAGTCGC
AATACCTCCAACAGCAACAACAGCAACAACAGCAACAACAACACCTGATG
CACGGCACGGGTGCTTATGGCCAGCCCCCCCGTCAACCTTTCAATCCTCC
TTTCCCGGCCCTCAGTGGCGCCGGCTCCCCAATCCCATTCCTCCTGCACT
CCGCCCCTCCTCCCCCTCCTTCTGCCTCTTCCTCCGCCCCTCCCAGTCAA
TCCCAGCAATCAAATTCCAGAAACATCACCCCTCCCGCGATGACGCCGGA
GGCCCTGGCGGTGTTTACCCAGAACATGGACATGAGTAGTTTGCAGGCAC
AAGCGGCGGCCTACTACCAATTGATGGCTTCCCACGGTTTGCCTGTCCCT
CACCCCTATGGTTTTGCTCCTGGGCAGGAAGGAGGGGGGATAGGAGGAGG
AGTGGGGGGAGGGTTTCCTATGCCACCTGTAGCGATGGGTGGGGGGCCTT
TGCACCAGGAGGGGGAAAGAGGGGTAGGACGAGGAAAAGGAAAAGCAGCG
GCAGGAGGAGGTACCGGTGGTGGTGAAAAGGCGGGACCGAAGGGGAAGAA
GAGCGTGAGGAAATGGACAGCAGAAGAAGACGCAGAGATGGTGCGGCTGG
TATTGGAGTTGGGCACGAAACAATGGGGTCAGATCGGGTTGAATCTAGGT
GGGAGGAGCGGAAAGCAGTGTAGAGAGAGGTGGCACAATCAGGTGG
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Synonyms
Publications