jgi.p|Nanoce1779_2|218402, mRNA_8752 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|218402
Unique NamemRNA_8752
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1671
Alignment locationscaffold_28:42357..44027 -

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Properties
Property NameValue
TranscriptId218488
TrackFilteredModels2
ProteinId218402
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:42357..44027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|218402gene_8752Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|218402mRNA_8752-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8752CDS_8752Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8752 ID=mRNA_8752|Name=jgi.p|Nanoce1779_2|218402|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
CTCCTTCTCTTCCTCCCTCCCTCCCTCCCTCCCTAGCTTGACCCGAACAT
AAAGAAGGAGGCCTGGTCAGCGGAGGAGGAGATGATATTGCAGCAGAAGC
ACTCGGAATTTGGAAACCGTTGGGCGGAAATAGCGCGCTATCTGCCGGGG
AGGACGGACAATGCGATTAAGGTGGAAAGGGAGGGAAGGAAGGAGGGGGG
GAGGGAGGACATGCAGTTGTGGGGGAGAGGCGGCATGCATGTGTGCTTGG
TGCTTGTGGGAACCTTCCTCCTTGCCATGGAAAACCTACCCGCATTCGTT
CACAGTTTTCATCACCTTCTCTTCCCTCCCTCCCTCCTTATTTTCGTTCT
CTTCATTCTTCCTCCCTGTCGTACACAGAACCATTACCACAACGCCCGGC
GTCGGATCAGCAAAGCCAAAGGATCCACCGATAGCGACCCTCTTGTCGCT
CCTGCTGCTGGTGGTGTCGGCACTATCAGCAGCAATAACACAAACCCCAC
CATTTTGAATGCCCGTCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCCACC
CCTCTTTCGGGATCACACCCCCTCCCGCGATGCCCCACAACCAGCCCCCA
GACGGGATGGCCGCGCCCTCCCCTCTCACGGGAGCCTTCCTTTCCTCCCT
CCCTCCCTCGGGCCCTTCCCCTACCGCCGGCCTGCCCATGCAATTCAATC
CCCTCCCTCTCCCCGGCACCGGCGACCTCGCCCTCCCTCCCGTCTTCCCC
CCATCCTTCCCCCTCCCTGTGCCCGCCACAAAACTGTCTCCCGAGCAAGG
ATCGAGTGAGGGGGGGGCGACGACCGAAGAGGCTGAAGCAGGAGAAGAGA
AGGGGAGGGAGGGAGGGAAGAAGGACGGTCCGGATGAGGCAGAGATACTT
TTGTCTCTGAGCTGCCCTCAGAGTCGGAGCAAGGAGGGAGGGAGGGAGGA
AGGGAAGGAGGACGAAACGACAGGCGCGAGCAGCACTCCGGGGGGAGGGC
GAAAGCGGGCGAGGGAGGGGGAAGGGAAGGAGGAGGGAGGGGGGGAGGTA
ATTCTGTCTGATAAGCCTCCAGCTGTGTCGTCAATCCCGGAGGCAGACGC
TGCGTCTTCCCCTGTTCCATTGCAGGAGGGCAGCTGTGAAAAAGCGGAGG
AGCAGGTGGAAGACGGGAAGAAGGACGAGATGACGAGTCCTCTGGCGGAA
GCCGCAACGGAGAGAGGGAGGGAGGATGAGAGAATGGAAGCAGCAGCAGT
AACAGTTGCAGAGGTCTAAGGGCATTGAGATCGGGGCTAGGAAGGAGGAG
GGGAGGTAGGGAAGGATTCCAAGTAATAATCATGAGTATGCACACCCTAA
TTTGCCAGGTTAGCACTGAAGAGGCGCAAAGCACGTGTATTCCTCCGTCG
TCTCTCCCTTTCTCCCTCCCTCCCTCCCTCCTCTTTTTTGTGCGCGGACG
GGAGTGGTTAGGAAGGAGGGAAGTGGGGGAGGAGGGAAGGGTGGTGACCA
GGAAAGCACTCACAAAAATCGATCTCAAACTCGCGGCCTTGAAACGACAA
CAAACGCAGCCAGCAGCAGCAGCAAGGAATTATGACATATATATCATATA
GCAGCAGCAGCAAGGAATTATGACATATATATCATATAGCAGCAGCAGCA
AGGAATTATGACATATATATC
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protein sequence of jgi.p|Nanoce1779_2|218402

>mRNA_8752-protein ID=mRNA_8752-protein|Name=jgi.p|Nanoce1779_2|218402|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MILQQKHSEFGNRWAEIARYLPGRTDNAIKVEREGRKEGGREDMQLWGRG
GMHVCLVLVGTFLLAMENLPAFVHSFHHLLFPPSLLIFVLFILPPCRTQN
HYHNARRRISKAKGSTDSDPLVAPAAGGVGTISSNNTNPTILNARPPSRP
PSLPPHPSFGITPPPAMPHNQPPDGMAAPSPLTGAFLSSLPPSGPSPTAG
LPMQFNPLPLPGTGDLALPPVFPPSFPLPVPATKLSPEQGSSEGGATTEE
AEAGEEKGREGGKKDGPDEAEILLSLSCPQSRSKEGGREEGKEDETTGAS
STPGGGRKRAREGEGKEEGGGEVILSDKPPAVSSIPEADAASSPVPLQEG
SCEKAEEQVEDGKKDEMTSPLAEAATERGREDERMEAAAVTVAEV*
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mRNA from alignment at scaffold_28:42357..44027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8752 ID=mRNA_8752|Name=jgi.p|Nanoce1779_2|218402|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at scaffold_28:42357..44027- (Nannochloropsis oceanica)
CTCCTTCTCTTCCTCCCTCCCTCCCTCCCTCCCTAGCTTGACCCGAACAT
AAAGAAGGAGGCCTGGTCAGCGGAGGAGGAGATGATATTGCAGCAGAAGC
ACTCGGAATTTGGAAACCGTTGGGCGGAAATAGCGCGCTATCTGCCGGGG
AGGACGGACAATGCGATTAAGGTGGAAAGGGAGGGAAGGAAGGAGGGGGG
GAGGGAGGACATGCAGTTGTGGGGGAGAGGCGGCATGCATGTGTGCTTGG
TGCTTGTGGGAACCTTCCTCCTTGCCATGGAAAACCTACCCGCATTCGTT
CACAGTTTTCATCACCTTCTCTTCCCTCCCTCCCTCCTTATTTTCGTTCT
CTTCATTCTTCCTCCCTGTCGTACACAGAACCATTACCACAACGCCCGGC
GTCGGATCAGCAAAGCCAAAGGATCCACCGATAGCGACCCTCTTGTCGCT
CCTGCTGCTGGTGGTGTCGGCACTATCAGCAGCAATAACACAAACCCCAC
CATTTTGAATGCCCGTCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCCACC
CCTCTTTCGGGATCACACCCCCTCCCGCGATGCCCCACAACCAGCCCCCA
GACGGGATGGCCGCGCCCTCCCCTCTCACGGGAGCCTTCCTTTCCTCCCT
CCCTCCCTCGGGCCCTTCCCCTACCGCCGGCCTGCCCATGCAATTCAATC
CCCTCCCTCTCCCCGGCACCGGCGACCTCGCCCTCCCTCCCGTCTTCCCC
CCATCCTTCCCCCTCCCTGTGCCCGCCACAAAACTGTCTCCCGAGCAAGG
ATCGAGTGAGGGGGGGGCGACGACCGAAGAGGCTGAAGCAGGAGAAGAGA
AGGGGAGGGAGGGAGGGAAGAAGGACGGTCCGGATGAGGCAGAGATACTT
TTGTCTCTGAGCTGCCCTCAGAGTCGGAGCAAGGAGGGAGGGAGGGAGGA
AGGGAAGGAGGACGAAACGACAGGCGCGAGCAGCACTCCGGGGGGAGGGC
GAAAGCGGGCGAGGGAGGGGGAAGGGAAGGAGGAGGGAGGGGGGGAGGTA
ATTCTGTCTGATAAGCCTCCAGCTGTGTCGTCAATCCCGGAGGCAGACGC
TGCGTCTTCCCCTGTTCCATTGCAGGAGGGCAGCTGTGAAAAAGCGGAGG
AGCAGGTGGAAGACGGGAAGAAGGACGAGATGACGAGTCCTCTGGCGGAA
GCCGCAACGGAGAGAGGGAGGGAGGATGAGAGAATGGAAGCAGCAGCAGT
AACAGTTGCAGAGGTCTAAGGGCATTGAGATCGGGGCTAGGAAGGAGGAG
GGGAGGTAGGGAAGGATTCCAAGTAATAATCATGAGTATGCACACCCTAA
TTTGCCAGGTTAGCACTGAAGAGGCGCAAAGCACGTGTATTCCTCCGTCG
TCTCTCCCTTTCTCCCTCCCTCCCTCCCTCCTCTTTTTTGTGCGCGGACG
GGAGTGGTTAGGAAGGAGGGAAGTGGGGGAGGAGGGAAGGGTGGTGACCA
GGAAAGCACTCACAAAAATCGATCTCAAACTCGCGGCCTTGAAACGACAA
CAAACGCAGCCAGCAGCAGCAGCAAGGAATTATGACATATATATCATATA
GCAGCAGCAGCAAGGAATTATGACATATATATCATATAGCAGCAGCAGCA
AGGAATTATGACATATATATC
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Coding sequence (CDS) from alignment at scaffold_28:42357..44027-

>mRNA_8752 ID=mRNA_8752|Name=jgi.p|Nanoce1779_2|218402|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_28:42357..44027- (Nannochloropsis oceanica)
ATGATATTGCAGCAGAAGCACTCGGAATTTGGAAACCGTTGGGCGGAAAT
AGCGCGCTATCTGCCGGGGAGGACGGACAATGCGATTAAGGTGGAAAGGG
AGGGAAGGAAGGAGGGGGGGAGGGAGGACATGCAGTTGTGGGGGAGAGGC
GGCATGCATGTGTGCTTGGTGCTTGTGGGAACCTTCCTCCTTGCCATGGA
AAACCTACCCGCATTCGTTCACAGTTTTCATCACCTTCTCTTCCCTCCCT
CCCTCCTTATTTTCGTTCTCTTCATTCTTCCTCCCTGTCGTACACAGAAC
CATTACCACAACGCCCGGCGTCGGATCAGCAAAGCCAAAGGATCCACCGA
TAGCGACCCTCTTGTCGCTCCTGCTGCTGGTGGTGTCGGCACTATCAGCA
GCAATAACACAAACCCCACCATTTTGAATGCCCGTCCTCCCTCCCGCCCT
CCCTCCCTCCCTCCCCACCCCTCTTTCGGGATCACACCCCCTCCCGCGAT
GCCCCACAACCAGCCCCCAGACGGGATGGCCGCGCCCTCCCCTCTCACGG
GAGCCTTCCTTTCCTCCCTCCCTCCCTCGGGCCCTTCCCCTACCGCCGGC
CTGCCCATGCAATTCAATCCCCTCCCTCTCCCCGGCACCGGCGACCTCGC
CCTCCCTCCCGTCTTCCCCCCATCCTTCCCCCTCCCTGTGCCCGCCACAA
AACTGTCTCCCGAGCAAGGATCGAGTGAGGGGGGGGCGACGACCGAAGAG
GCTGAAGCAGGAGAAGAGAAGGGGAGGGAGGGAGGGAAGAAGGACGGTCC
GGATGAGGCAGAGATACTTTTGTCTCTGAGCTGCCCTCAGAGTCGGAGCA
AGGAGGGAGGGAGGGAGGAAGGGAAGGAGGACGAAACGACAGGCGCGAGC
AGCACTCCGGGGGGAGGGCGAAAGCGGGCGAGGGAGGGGGAAGGGAAGGA
GGAGGGAGGGGGGGAGGTAATTCTGTCTGATAAGCCTCCAGCTGTGTCGT
CAATCCCGGAGGCAGACGCTGCGTCTTCCCCTGTTCCATTGCAGGAGGGC
AGCTGTGAAAAAGCGGAGGAGCAGGTGGAAGACGGGAAGAAGGACGAGAT
GACGAGTCCTCTGGCGGAAGCCGCAACGGAGAGAGGGAGGGAGGATGAGA
GAATGGAAGCAGCAGCAGTAACAGTTGCAGAGGTCTAA
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Synonyms
Publications