jgi.p|Nanoce1779_2|603863, mRNA_8750 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603863
Unique NamemRNA_8750
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1323
Alignment locationscaffold_28:34460..35782 -

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Properties
Property NameValue
TranscriptId603949
TrackFilteredModels2
ProteinId603863
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:34460..35782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603863gene_8750Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603863mRNA_8750-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8750CDS_8750Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8750 ID=mRNA_8750|Name=jgi.p|Nanoce1779_2|603863|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
TTGTTCAAAGGAATAGGGAGAAAGGGAGGAGGGGGAAAGACAGTCGTTGG
CCTGATGGCAGGAACCTTGGGCCTGCTGGGGATCAGTGAAACGTTTGTGT
TTCTGCCTTTTGTGCCTCTCATCCACTCTCGGTTCCAAGGAATGATGGGG
TGGAGCAAGGGCGAGGCAGAGGACGTGGTTAGCAGTGTATGGGCATGCAC
ATGGGGGGCGGGTCAGATGCTAGGACCGCTGGTGGGGGGTTTGTTGATGG
ACACGCTGCCCCCGACGTTGCAGGTAGGGTGCGTCGTGGGGAGGACGGTA
GAGGAGGGGCCGGGGGAGGAAGGGGTAGATTACGATTTGGTGGAGATGGA
GTGTCTGAGTGCCTTTCCGTGGACGTCGGGATTGTGGGGTGCGGTGGGCT
TGGGATTGGCATTTCTTTTATTCTTGGGAGTGATGCGGACCAGGATCAAA
AAGGCGTGGCACCGGTGTAGAAAGGTAAAAGAAGAAGAGCAGGAAAATGG
AGGAATGCAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGCTGGAAGCGAAG
GGGAGCAGGGCAGAGGAAGAAGTAAAGGACTGCTACCCTTCATTCCTCTA
TCGGCCGTCTTCGCTCCCCTGTTAGCACGAGACCAGGGAGAACATGAGGC
GGAGGAAGTGGAGATGCATTCTCGTTTATCCTTGTCACTATCATACCGAC
GAAGCTCGTGGAGCCAGGACAGGGAGGGAGAGAGGGAGGAAGAGGGGCAA
GGAGGATGCAGGGATGGCATCATGGATCTTCATGATCAGGTGGACAGATC
GATACACAGCTCGCCATGTACATAATAATGGAATAATTGGACACATAAAA
TACGCGACAACGGAATAAGAAGGCAATTCTTGTATACATGTCTGATACGG
GGTTCATAGCAATGTTAAAAGCTCGAAACATGACGAAATTAAAATGCAAG
GTTGTGGTCGTTTCGTTCCTTTACTTGACGATTAGCAATTGTCAGCTTCC
GCATTGTGCTTATTTATATAACTTCACGGCCTTGGTCATCTCTACTCCCT
ACCTTGGCAGCGGGAAGACTAGGGCCGTAAAGCTCCATGCTTCATAAGAT
ACCCACGTACCAGTGTGCGACAAAGCAGTCAAAGCGTGGCGTGACGTGCG
TCCAAATGCTTTCAGAAGCTGCAGCAGCCACATATGAGCAGTGGGTCTGT
GATCGGCGCCAATGAGTACGACGATAAAATGCCCTCCATTCCGCGCTCGA
CTGAAATTTTCCTTGCAATGGCTGGTCTTAATTTCGCCCTGCTGCCCGTT
GGGGAACTACTACCTAGAATGCT
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protein sequence of jgi.p|Nanoce1779_2|603863

>mRNA_8750-protein ID=mRNA_8750-protein|Name=jgi.p|Nanoce1779_2|603863|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MAGTLGLLGISETFVFLPFVPLIHSRFQGMMGWSKGEAEDVVSSVWACTW
GAGQMLGPLVGGLLMDTLPPTLQVGCVVGRTVEEGPGEEGVDYDLVEMEC
LSAFPWTSGLWGAVGLGLAFLLFLGVMRTRIKKAWHRCRKVKEEEQENGG
MQEEEEEEEGEAGSEGEQGRGRSKGLLPFIPLSAVFAPLLARDQGEHEAE
EVEMHSRLSLSLSYRRSSWSQDREGEREEEGQGGCRDGIMDLHDQVDRSI
HSSPCT*
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mRNA from alignment at scaffold_28:34460..35782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8750 ID=mRNA_8750|Name=jgi.p|Nanoce1779_2|603863|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp|location=Sequence derived from alignment at scaffold_28:34460..35782- (Nannochloropsis oceanica)
TTGTTCAAAGGAATAGGGAGAAAGGGAGGAGGGGGAAAGACAGTCGTTGG
CCTGATGGCAGGAACCTTGGGCCTGCTGGGGATCAGTGAAACGTTTGTGT
TTCTGCCTTTTGTGCCTCTCATCCACTCTCGGTTCCAAGGAATGATGGGG
TGGAGCAAGGGCGAGGCAGAGGACGTGGTTAGCAGTGTATGGGCATGCAC
ATGGGGGGCGGGTCAGATGCTAGGACCGCTGGTGGGGGGTTTGTTGATGG
ACACGCTGCCCCCGACGTTGCAGGTAGGGTGCGTCGTGGGGAGGACGGTA
GAGGAGGGGCCGGGGGAGGAAGGGGTAGATTACGATTTGGTGGAGATGGA
GTGTCTGAGTGCCTTTCCGTGGACGTCGGGATTGTGGGGTGCGGTGGGCT
TGGGATTGGCATTTCTTTTATTCTTGGGAGTGATGCGGACCAGGATCAAA
AAGGCGTGGCACCGGTGTAGAAAGGTAAAAGAAGAAGAGCAGGAAAATGG
AGGAATGCAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGCTGGAAGCGAAG
GGGAGCAGGGCAGAGGAAGAAGTAAAGGACTGCTACCCTTCATTCCTCTA
TCGGCCGTCTTCGCTCCCCTGTTAGCACGAGACCAGGGAGAACATGAGGC
GGAGGAAGTGGAGATGCATTCTCGTTTATCCTTGTCACTATCATACCGAC
GAAGCTCGTGGAGCCAGGACAGGGAGGGAGAGAGGGAGGAAGAGGGGCAA
GGAGGATGCAGGGATGGCATCATGGATCTTCATGATCAGGTGGACAGATC
GATACACAGCTCGCCATGTACATAATAATGGAATAATTGGACACATAAAA
TACGCGACAACGGAATAAGAAGGCAATTCTTGTATACATGTCTGATACGG
GGTTCATAGCAATGTTAAAAGCTCGAAACATGACGAAATTAAAATGCAAG
GTTGTGGTCGTTTCGTTCCTTTACTTGACGATTAGCAATTGTCAGCTTCC
GCATTGTGCTTATTTATATAACTTCACGGCCTTGGTCATCTCTACTCCCT
ACCTTGGCAGCGGGAAGACTAGGGCCGTAAAGCTCCATGCTTCATAAGAT
ACCCACGTACCAGTGTGCGACAAAGCAGTCAAAGCGTGGCGTGACGTGCG
TCCAAATGCTTTCAGAAGCTGCAGCAGCCACATATGAGCAGTGGGTCTGT
GATCGGCGCCAATGAGTACGACGATAAAATGCCCTCCATTCCGCGCTCGA
CTGAAATTTTCCTTGCAATGGCTGGTCTTAATTTCGCCCTGCTGCCCGTT
GGGGAACTACTACCTAGAATGCT
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Coding sequence (CDS) from alignment at scaffold_28:34460..35782-

>mRNA_8750 ID=mRNA_8750|Name=jgi.p|Nanoce1779_2|603863|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_28:34460..35782- (Nannochloropsis oceanica)
ATGGCAGGAACCTTGGGCCTGCTGGGGATCAGTGAAACGTTTGTGTTTCT
GCCTTTTGTGCCTCTCATCCACTCTCGGTTCCAAGGAATGATGGGGTGGA
GCAAGGGCGAGGCAGAGGACGTGGTTAGCAGTGTATGGGCATGCACATGG
GGGGCGGGTCAGATGCTAGGACCGCTGGTGGGGGGTTTGTTGATGGACAC
GCTGCCCCCGACGTTGCAGGTAGGGTGCGTCGTGGGGAGGACGGTAGAGG
AGGGGCCGGGGGAGGAAGGGGTAGATTACGATTTGGTGGAGATGGAGTGT
CTGAGTGCCTTTCCGTGGACGTCGGGATTGTGGGGTGCGGTGGGCTTGGG
ATTGGCATTTCTTTTATTCTTGGGAGTGATGCGGACCAGGATCAAAAAGG
CGTGGCACCGGTGTAGAAAGGTAAAAGAAGAAGAGCAGGAAAATGGAGGA
ATGCAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGCTGGAAGCGAAGGGGA
GCAGGGCAGAGGAAGAAGTAAAGGACTGCTACCCTTCATTCCTCTATCGG
CCGTCTTCGCTCCCCTGTTAGCACGAGACCAGGGAGAACATGAGGCGGAG
GAAGTGGAGATGCATTCTCGTTTATCCTTGTCACTATCATACCGACGAAG
CTCGTGGAGCCAGGACAGGGAGGGAGAGAGGGAGGAAGAGGGGCAAGGAG
GATGCAGGGATGGCATCATGGATCTTCATGATCAGGTGGACAGATCGATA
CACAGCTCGCCATGTACATAA
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Synonyms
Publications