jgi.p|Nanoce1779_2|559915, mRNA_8748 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559915
Unique NamemRNA_8748
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_28:27869..28765 -

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Properties
Property NameValue
TranscriptId560001
TrackFilteredModels2
ProteinId559915
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:27869..28765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559915gene_8748Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559915mRNA_8748-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8748CDS_8748Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8748 ID=mRNA_8748|Name=jgi.p|Nanoce1779_2|559915|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
ACAGCACGTATATACATACATATATATATAAGCCAATCCCTGCTCCGCCT
GCCATCATGGAACCACCGGCTCCTCGTCATGAAACCGATGCCCCTCCTCC
CCCTCCCAATCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCACCTCCG
CCTACACCCCTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAACCCGCC
ATAACTCTGGAAATACTGCGCAATGGCGTGGAGATGGACAGACTCCAACT
CTTCTCTTCCTCCTCATGCGAAGCAGCTCAGCACTACTACACCTTTGGTC
GTATGCCTGGTGCGGTGACATTCGTCCTCGACAACCCCACCATTTCACGC
GTGCACGCCGTTGTTCAATTTAGAAAGAAGGATGACACGTTGCACGTGCA
AGACCTGGGAAGCACACATGGGACGTTTGTAAATAAACAACGCTTGCCGG
CAAGAGAATGGCAGCCACTTCTGGTGGGTGACCTGTTGCAATTCGGCCAG
TCTACGCGCCTTTACCTCGTCACCGGTCCTGAGGCCCTTGCACGACCGGA
GGTGGAAGAAGAAGAACTGCAAGCGTATAGGGTCGAAAGGGGGAAGGTTA
GGGCATGGAGAGAGGGGAGGAGGAGGAGGAAGGAGGAGCAAGAAGGAAAG
GAAGGGGAGGGTGAGAGGTTGGAGGAGGGAGACGAAGAGGGAGGGGGGGG
GGGTCACTTGGGGGATGGCTGA
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protein sequence of jgi.p|Nanoce1779_2|559915

>mRNA_8748-protein ID=mRNA_8748-protein|Name=jgi.p|Nanoce1779_2|559915|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MEPPAPRHETDAPPPPPNPQPQAHQPSPSTSAYTPPSWGGRLSPEEPAIT
LEILRNGVEMDRLQLFSSSSCEAAQHYYTFGRMPGAVTFVLDNPTISRVH
AVVQFRKKDDTLHVQDLGSTHGTFVNKQRLPAREWQPLLVGDLLQFGQST
RLYLVTGPEALARPEVEEEELQAYRVERGKVRAWREGRRRRKEEQEGKEG
EGERLEEGDEEGGGGGHLGDG*
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mRNA from alignment at scaffold_28:27869..28765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8748 ID=mRNA_8748|Name=jgi.p|Nanoce1779_2|559915|organism=Nannochloropsis oceanica|type=mRNA|length=897bp|location=Sequence derived from alignment at scaffold_28:27869..28765- (Nannochloropsis oceanica)
ACAGCACGTATATACATACATATATATATAAGCCAATCCCTGCTCCGCCT
GCCATCATGGAACCACCGGCTCCTCGTCATGAAACCGATGCCCCTCCTCC
CCCTCCCAATCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCACCTCCG
CCTACACCCCTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAACCCGCC
ATAACTCTGGAAATACTGCGCAATGGCGTGGAGATGGACAGACTCCAACT
CTTCTCTTCCTCCTCATGCGAAGCAGCTCAGCACTACTACACCTTTGGTC
GTATGCCTGGTGCGGTGACATTCGTCCTCGACAACCCCACCATTTCACGC
GTGCACGCCGTTGTTCAATTTAGAAAGAAGGATGACACGTTGCACGTGCA
AGACCTGGGAAGCACACATGGGACGTTTGTAAATAAACAACGTACGTAGG
GGAGAGGAAGGGGAGGAAGAAAGGAAACAACCTCTTTCTGTCACTTCCCA
TCTCGTAGGATCAGTTTTGTGATGCGTTCCGATGTGAATGAAGCCATTTG
TCCACATTATCAAAATATCCCTCCCACCCTTCCTCCCTTTCTCCCTTCCT
CCCTCCTTCCCTGCAGGCTTGCCGGCAAGAGAATGGCAGCCACTTCTGGT
GGGTGACCTGTTGCAATTCGGCCAGTCTACGCGCCTTTACCTCGTCACCG
GTCCTGAGGCCCTTGCACGACCGGAGGTGGAAGAAGAAGAACTGCAAGCG
TATAGGGTCGAAAGGGGGAAGGTTAGGGCATGGAGAGAGGGGAGGAGGAG
GAGGAAGGAGGAGCAAGAAGGAAAGGAAGGGGAGGGTGAGAGGTTGGAGG
AGGGAGACGAAGAGGGAGGGGGGGGGGGTCACTTGGGGGATGGCTGA
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Coding sequence (CDS) from alignment at scaffold_28:27869..28765-

>mRNA_8748 ID=mRNA_8748|Name=jgi.p|Nanoce1779_2|559915|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_28:27869..28765- (Nannochloropsis oceanica)
GCTTGCCGGCAAGAGAATGGCAGCCACTTCTGGTGGGTGACCTGTTGCAA
TTCGGCCAGTCTACGCGCCTTTACCTCGTCACCGGTCCTGAGGCCCTTGC
ACGACCGGAGGTGGAAGAAGAAGAACTGCAAGCGTATAGGGTCGAAAGGG
GGAAGGTTAGGGCATGGAGAGAGGGGAGGAGGAGGAGGAAGGAGGAGCAA
GAAGGAAAGGAAGGGGAGGGTGAGAGGTTGGAGGAGGGAGACGAAGAGGG
AGGGGGGGGGGGTCACTTGGGGGATGGCTGAATGGAACCACCGGCTCCTC
GTCATGAAACCGATGCCCCTCCTCCCCCTCCCAATCCCCAACCGCAAGCC
CATCAACCCTCTCCTAGCACCTCCGCCTACACCCCTCCATCCTGGGGCGG
GCGACTTTCTCCCGAGGAACCCGCCATAACTCTGGAAATACTGCGCAATG
GCGTGGAGATGGACAGACTCCAACTCTTCTCTTCCTCCTCATGCGAAGCA
GCTCAGCACTACTACACCTTTGGTCGTATGCCTGGTGCGGTGACATTCGT
CCTCGACAACCCCACCATTTCACGCGTGCACGCCGTTGTTCAATTTAGAA
AGAAGGATGACACGTTGCACGTGCAAGACCTGGGAAGCACACATGGGACG
TTTGTAAATAAACAACGCTTGCCGGCAAGAGAATGGCAGCCACTTCTGGT
GGGTGACCTGTTGCAATTCGGCCAGTCTACGCGCCTTTACCTCGTCACCG
GTCCTGAGGCCCTTGCACGACCGGAGGTGGAAGAAGAAGAACTGCAAGCG
TATAGGGTCGAAAGGGGGAAGGTTAGGGCATGGAGAGAGGGGAGGAGGAG
GAGGAAGGAGGAGCAAGAAGGAAAGGAAGGGGAGGGTGAGAGGTTGGAGG
AGGGAGACGAAGAGGGAGGGGGGGGGGGTCACTTGGGGGATGGCTGAATG
GAACCACCGGCTCCTCGTCATGAAACCGATGCCCCTCCTCCCCCTCCCAA
TCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCACCTCCGCCTACACCC
CTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAACCCGCCATAACTCTG
GAAATACTGCGCAATGGCGTGGAGATGGACAGACTCCAACTCTTCTCTTC
CTCCTCATGCGAAGCAGCTCAGCACTACTACACCTTTGGTCGTATGCCTG
GTGCGGTGACATTCGTCCTCGACAACCCCACCATTTCACGCGTGCACGCC
GTTGTTCAATTTAGAAAGAAGGATGACACGTTGCACGTGCAAGACCTGGG
AAGCACACATGGGACGTTTGTAAATAAACAAC
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Synonyms
Publications