jgi.p|Nanoce1779_2|218176, mRNA_8747 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|218176
Unique Name	mRNA_8747
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2100
Alignment location	scaffold_28:25779..27878 -

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Properties


Property Name	Value
TranscriptId	218262
Track	FilteredModels2
ProteinId	218176

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:25779..27878 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|218176	gene_8747	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|218176	mRNA_8747-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8747	CDS_8747	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:25779..27878-
coding sequence from alignment at scaffold_28:25779..27878-

mRNA sequence

>mRNA_8747 ID=mRNA_8747|Name=jgi.p|Nanoce1779_2|218176|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp
GGATGGCTGAAGATGCGGCGGAAGAGGAGGGGGAGGAAGGGGAGGAAGGC
AGGGAGGAAGGGGAGAGGAAGGCAGAATTACCCGATTATTTGAAAAACTT
ACCGGAACATCAACGGAGGGCGTTTGAGCGAGGGAGGGAGGGAGGGATGG
GGATGGTGACGGTGGACGAGAATGAGGTGCATGAAAAGGATCGGAAGTTG
TTCGAGAGGCTCAGGGCCAAGGCGTTGAAGATCGAGCACATGGAGAGTGA
GATTGGGAGGATTTATGCCAAAGAGAACTCCCAGGTACCTTACCTTCCCG
TCCTCCCTCCCTCCTTCCTTTCCCCTTCCCTCCTTCACTTCCTCTCTATT
TCACTGCAGGCAGAAGAGGACAGGAGCAATTATAAACAATGAATGGGAAG
CAAAAACCCACCTCTCTTTCCCTCCCTCTCTCCCTCCCTTCCTCCTCCCT
CCCTTCCTCTTCCCTCCATTGCTCCTTCCCTTCCTCCTTCCCTTCCCCAG
GGCGGACTGACCGATGGTCAGCGACAAGCTGTGGCCCGCAATGAGGAGAG
GATCGAGAAGCTCAAGGAAGAGGTGGAAGATATAGAGGAGCAAATCAGAG
GAAAGAACGCTGCCAGGCTGAAAGGGGCAGGGAAGGGCGGAAGGGGGCTG
CAAAAGAAAAAGAAAGGAGGGGAGAGGGAGGAGGACGGCGAGGAAGGAAG
AGAGGACGAAGATGACTTCTTTGACCGTGCAAAGGCAGGGGGGAAGGGAG
CGAGGGAGGGAGGGGGGACAGCGACCAACTGGCGTGTGCGCCGGGGACAG
AAGAAGGCGGATGGTGGGGGAGGGAAGGAGGGAGGGAGGGGGGGGTCCCG
CAGCAGTAGTAGCAGTGGCCTGATCGGAGAGGGTGGTGGTAAGGTAGAAA
CGTACGAGAGTTTATCAGCAAAGCTGGCACACGCACGCTTGGAGCTTGAA
AAATTGGAAGCTGCTCCTCCCTCCCTTCCTTCCTCCCTTCCTCCGTCGAC
TTTTGCTGCTGCTGCTGCTGGTGAGGGCGGGAAGGAGGAAGGGGGGAAGG
ACGATACCCTTGAGCGGTTCATGGTTGAGAACGAGGCCAAGAAGCAGGCG
TCGGTTTTCAAGGGGTGGGTGAGGAAGAAAGAGGAGGTTGAGGAGGAGAT
TAGGAGGCTGGCTGCAGTGGTAGAGATGGTTCGGCCGGCGTTGCCGAGCT
TGAGAATGAAGGGAGGGAGGGAGGGGAAGAAGGAGGAGGGATTTGAAAGA
GGGAGAGTGGTGGAGGGAAAGGAGCAAACAGTGCCGCAGCAGCAGCATGT
GGAGGTGAAGGAGAAGAAGGAGGTCACGCTGGATCCGACGAAGGAGAAGA
CGCTCGCGGTGATGTTGCCCCATCCACCATCACGAGTTGCCGCAGCAGTA
GCCCCACCAGCTGTAGCGCAAGCAGCAGCAGCAGCAGCACCACCAACAGT
ACGAGCAGCAGCACCACCACCAGCAGCGACAACATCGAAAGTTGTCAAAG
GTCCCAGCATGCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCACCACCC
TCCTCCTCCTCCTCCACTGCTGCTGCAGCTCCTCCTCCTCATTCCTCCTC
CTCGTCTTTCTCTTCCTTTCATAAACCTGCACTTCCCTCGTCCTTGCCAG
GGTCGGAAAAGCGTCCACTGCCAGAGGAGGAGACCATGCTCCCTCCCTCC
CCTCCTCTCCCTCTTCCTCCTCCCTCCCCATCTTCATCCACCTCAAACGA
CAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCCGCAGCAGCAAAAAAC
AGAAGACTGTTACCATACCTTCCTCCCTCTTTTCGTCCAAGCGGGATGTG
GGAGAGAATGAGGCGGAAAGGGCGACACGCAAGGCTAAGGCTGCTGAAGG
AGAGGAGGCCTACGTGGCTTTCTACCACAAACCGAAGGACCAGAAGGGAG
ATGGGCGGACAGCACTGAATGACAAACTTGGTTATTAGAATAGGAAACTT
GATCCAAGCATTGGGAATCAAGGGCAACAGACGAGAGTGAAGGAAAGCAA
GCTCTGTAGGTGGGCCGTTGGTAATCGCTTTTATAAAGCTTGCGCCATTT

protein sequence of jgi.p|Nanoce1779_2|218176

>mRNA_8747-protein ID=mRNA_8747-protein|Name=jgi.p|Nanoce1779_2|218176|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MGSKNPPLFPSLSPSLPPPSLPLPSIAPSLPPSLPQGGLTDGQRQAVARN
EERIEKLKEEVEDIEEQIRGKNAARLKGAGKGGRGLQKKKKGGEREEDGE
EGREDEDDFFDRAKAGGKGAREGGGTATNWRVRRGQKKADGGGGKEGGRG
GSRSSSSSGLIGEGGGKVETYESLSAKLAHARLELEKLEAAPPSLPSSLP
PSTFAAAAAGEGGKEEGGKDDTLERFMVENEAKKQASVFKGWVRKKEEVE
EEIRRLAAVVEMVRPALPSLRMKGGREGKKEEGFERGRVVEGKEQTVPQQ
QHVEVKEKKEVTLDPTKEKTLAVMLPHPPSRVAAAVAPPAVAQAAAAAAP
PTVRAAAPPPAATTSKVVKGPSMPPPPPPLPPPPPPSSSSSTAAAAPPPH
SSSSSFSSFHKPALPSSLPGSEKRPLPEEETMLPPSPPLPLPPPSPSSST
SNDSSSSSNSSNSSRSSKKQKTVTIPSSLFSSKRDVGENEAERATRKAKA
AEGEEAYVAFYHKPKDQKGDGRTALNDKLGY*

mRNA from alignment at scaffold_28:25779..27878-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8747 ID=mRNA_8747|Name=jgi.p|Nanoce1779_2|218176|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp|location=Sequence derived from alignment at scaffold_28:25779..27878- (Nannochloropsis oceanica)
GGATGGCTGAAGATGCGGCGGAAGAGGAGGGGGAGGAAGGGGAGGAAGGC
AGGGAGGAAGGGGAGAGGAAGGCAGAATTACCCGATTATTTGAAAAACTT
ACCGGAACATCAACGGAGGGCGTTTGAGCGAGGGAGGGAGGGAGGGATGG
GGATGGTGACGGTGGACGAGAATGAGGTGCATGAAAAGGATCGGAAGTTG
TTCGAGAGGCTCAGGGCCAAGGCGTTGAAGATCGAGCACATGGAGAGTGA
GATTGGGAGGATTTATGCCAAAGAGAACTCCCAGGTACCTTACCTTCCCG
TCCTCCCTCCCTCCTTCCTTTCCCCTTCCCTCCTTCACTTCCTCTCTATT
TCACTGCAGGCAGAAGAGGACAGGAGCAATTATAAACAATGAATGGGAAG
CAAAAACCCACCTCTCTTTCCCTCCCTCTCTCCCTCCCTTCCTCCTCCCT
CCCTTCCTCTTCCCTCCATTGCTCCTTCCCTTCCTCCTTCCCTTCCCCAG
GGCGGACTGACCGATGGTCAGCGACAAGCTGTGGCCCGCAATGAGGAGAG
GATCGAGAAGCTCAAGGAAGAGGTGGAAGATATAGAGGAGCAAATCAGAG
GAAAGAACGCTGCCAGGCTGAAAGGGGCAGGGAAGGGCGGAAGGGGGCTG
CAAAAGAAAAAGAAAGGAGGGGAGAGGGAGGAGGACGGCGAGGAAGGAAG
AGAGGACGAAGATGACTTCTTTGACCGTGCAAAGGCAGGGGGGAAGGGAG
CGAGGGAGGGAGGGGGGACAGCGACCAACTGGCGTGTGCGCCGGGGACAG
AAGAAGGCGGATGGTGGGGGAGGGAAGGAGGGAGGGAGGGGGGGGTCCCG
CAGCAGTAGTAGCAGTGGCCTGATCGGAGAGGGTGGTGGTAAGGTAGAAA
CGTACGAGAGTTTATCAGCAAAGCTGGCACACGCACGCTTGGAGCTTGAA
AAATTGGAAGCTGCTCCTCCCTCCCTTCCTTCCTCCCTTCCTCCGTCGAC
TTTTGCTGCTGCTGCTGCTGGTGAGGGCGGGAAGGAGGAAGGGGGGAAGG
ACGATACCCTTGAGCGGTTCATGGTTGAGAACGAGGCCAAGAAGCAGGCG
TCGGTTTTCAAGGGGTGGGTGAGGAAGAAAGAGGAGGTTGAGGAGGAGAT
TAGGAGGCTGGCTGCAGTGGTAGAGATGGTTCGGCCGGCGTTGCCGAGCT
TGAGAATGAAGGGAGGGAGGGAGGGGAAGAAGGAGGAGGGATTTGAAAGA
GGGAGAGTGGTGGAGGGAAAGGAGCAAACAGTGCCGCAGCAGCAGCATGT
GGAGGTGAAGGAGAAGAAGGAGGTCACGCTGGATCCGACGAAGGAGAAGA
CGCTCGCGGTGATGTTGCCCCATCCACCATCACGAGTTGCCGCAGCAGTA
GCCCCACCAGCTGTAGCGCAAGCAGCAGCAGCAGCAGCACCACCAACAGT
ACGAGCAGCAGCACCACCACCAGCAGCGACAACATCGAAAGTTGTCAAAG
GTCCCAGCATGCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCACCACCC
TCCTCCTCCTCCTCCACTGCTGCTGCAGCTCCTCCTCCTCATTCCTCCTC
CTCGTCTTTCTCTTCCTTTCATAAACCTGCACTTCCCTCGTCCTTGCCAG
GGTCGGAAAAGCGTCCACTGCCAGAGGAGGAGACCATGCTCCCTCCCTCC
CCTCCTCTCCCTCTTCCTCCTCCCTCCCCATCTTCATCCACCTCAAACGA
CAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCCGCAGCAGCAAAAAAC
AGAAGACTGTTACCATACCTTCCTCCCTCTTTTCGTCCAAGCGGGATGTG
GGAGAGAATGAGGCGGAAAGGGCGACACGCAAGGCTAAGGCTGCTGAAGG
AGAGGAGGCCTACGTGGCTTTCTACCACAAACCGAAGGACCAGAAGGGAG
ATGGGCGGACAGCACTGAATGACAAACTTGGTTATTAGAATAGGAAACTT
GATCCAAGCATTGGGAATCAAGGGCAACAGACGAGAGTGAAGGAAAGCAA
GCTCTGTAGGTGGGCCGTTGGTAATCGCTTTTATAAAGCTTGCGCCATTT

Coding sequence (CDS) from alignment at scaffold_28:25779..27878-

>mRNA_8747 ID=mRNA_8747|Name=jgi.p|Nanoce1779_2|218176|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_28:25779..27878- (Nannochloropsis oceanica)
ATGGGAAGCAAAAACCCACCTCTCTTTCCCTCCCTCTCTCCCTCCCTTCC
TCCTCCCTCCCTTCCTCTTCCCTCCATTGCTCCTTCCCTTCCTCCTTCCC
TTCCCCAGGGCGGACTGACCGATGGTCAGCGACAAGCTGTGGCCCGCAAT
GAGGAGAGGATCGAGAAGCTCAAGGAAGAGGTGGAAGATATAGAGGAGCA
AATCAGAGGAAAGAACGCTGCCAGGCTGAAAGGGGCAGGGAAGGGCGGAA
GGGGGCTGCAAAAGAAAAAGAAAGGAGGGGAGAGGGAGGAGGACGGCGAG
GAAGGAAGAGAGGACGAAGATGACTTCTTTGACCGTGCAAAGGCAGGGGG
GAAGGGAGCGAGGGAGGGAGGGGGGACAGCGACCAACTGGCGTGTGCGCC
GGGGACAGAAGAAGGCGGATGGTGGGGGAGGGAAGGAGGGAGGGAGGGGG
GGGTCCCGCAGCAGTAGTAGCAGTGGCCTGATCGGAGAGGGTGGTGGTAA
GGTAGAAACGTACGAGAGTTTATCAGCAAAGCTGGCACACGCACGCTTGG
AGCTTGAAAAATTGGAAGCTGCTCCTCCCTCCCTTCCTTCCTCCCTTCCT
CCGTCGACTTTTGCTGCTGCTGCTGCTGGTGAGGGCGGGAAGGAGGAAGG
GGGGAAGGACGATACCCTTGAGCGGTTCATGGTTGAGAACGAGGCCAAGA
AGCAGGCGTCGGTTTTCAAGGGGTGGGTGAGGAAGAAAGAGGAGGTTGAG
GAGGAGATTAGGAGGCTGGCTGCAGTGGTAGAGATGGTTCGGCCGGCGTT
GCCGAGCTTGAGAATGAAGGGAGGGAGGGAGGGGAAGAAGGAGGAGGGAT
TTGAAAGAGGGAGAGTGGTGGAGGGAAAGGAGCAAACAGTGCCGCAGCAG
CAGCATGTGGAGGTGAAGGAGAAGAAGGAGGTCACGCTGGATCCGACGAA
GGAGAAGACGCTCGCGGTGATGTTGCCCCATCCACCATCACGAGTTGCCG
CAGCAGTAGCCCCACCAGCTGTAGCGCAAGCAGCAGCAGCAGCAGCACCA
CCAACAGTACGAGCAGCAGCACCACCACCAGCAGCGACAACATCGAAAGT
TGTCAAAGGTCCCAGCATGCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTC
CACCACCCTCCTCCTCCTCCTCCACTGCTGCTGCAGCTCCTCCTCCTCAT
TCCTCCTCCTCGTCTTTCTCTTCCTTTCATAAACCTGCACTTCCCTCGTC
CTTGCCAGGGTCGGAAAAGCGTCCACTGCCAGAGGAGGAGACCATGCTCC
CTCCCTCCCCTCCTCTCCCTCTTCCTCCTCCCTCCCCATCTTCATCCACC
TCAAACGACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCCGCAGCAG
CAAAAAACAGAAGACTGTTACCATACCTTCCTCCCTCTTTTCGTCCAAGC
GGGATGTGGGAGAGAATGAGGCGGAAAGGGCGACACGCAAGGCTAAGGCT
GCTGAAGGAGAGGAGGCCTACGTGGCTTTCTACCACAAACCGAAGGACCA
GAAGGGAGATGGGCGGACAGCACTGAATGACAAACTTGGTTATTAG

Synonyms

Publications