jgi.p|Nanoce1779_2|532947, mRNA_8745 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532947
Unique Name	mRNA_8745
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1062
Alignment location	scaffold_28:18509..19984 -

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Properties


Property Name	Value
TranscriptId	533033
Track	FilteredModels2
ProteinId	532947

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:18509..19984 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532947	gene_8745	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532947	mRNA_8745-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8745	CDS_8745	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:18509..19984-
coding sequence from alignment at scaffold_28:18509..19984-

mRNA sequence

>mRNA_8745 ID=mRNA_8745|Name=jgi.p|Nanoce1779_2|532947|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGGGGGAGGCGATGCGAATCGACATTTTCCAAGAGGCCACGCCCAGCGT
GGCCTTCATAAATACCTTTGTGGAGCAACGGGATGCGTTTTCAATGAATG
TGATGGATGTACCCGCGGGAACTGGGTCGGGCTTTGTTTGGAACGATGAA
GGGTATATCGTAACGAACTATCACGTGATTCGGTCCGCCGAATCCGCGCA
AGTCACACTCACTGACCGCGACGGCCACCAGTCAACGTACAAAGCCCTCT
TGCGTGGTTTTGATGCAGATAAGGACGTGGCGGTTCTGCGTGTTGAAGCC
CCTCCAACCACCCTTCGTCCTATTCCTGTCGGTTCGTCTTCTGCTTTAAA
GGTGGGGCAGTCGGCCATGGCCATTGGCAATCCCTTCGGGTTGGATCACA
CGTTGACTGTCGGGGTGATTTCGGGATTAGGGCGAGAGGTGCGATCCCCC
TCAGGGCGTCCCATCAGCAACGTGATTCAGACGGATGCAGCCATCAATCC
AGGGAATTCGGGTGGACCCCTATTGGACTCTGCCGGTCGCTTGGTGGGCA
TGAATACAGCCATTTATTCTCTCTCTGGTGCGTCGGCAGGTATTGGATTC
GCGATTCCCGTGGATACGCTCAAGTCTATTGTGGAGACGATCATCCGGGA
TGGGAAGGTGGTTCGGCCGTTGATCGGCATCACTTACTTGGACAGCAGCC
AGGCCAGAGCGCTGGGTATTGACAAAGGTGTCCTCGTCTTAGACGTGCCC
AAGCAATCTCCCGGCGCCATCGCCGGAATGAGAGGCACTACCCGCAATCC
TCTCGGGTTAATTCAGCTGGGGGATATTATCGTTCAAATCAATGGCGACG
ATATTAATAACGAAGCGGACCTCTTTAAGACCCTCGAGAAGTACCGCCCG
GGGGATAAGATCAAGATCGTCGTGAAAAGGGTGATATCGGTGAAGGAGGG
AGGAAATGGGGAAGGAGGGAGGGGGAATGGTTTGGCAACGGCGGAGACGG
AGAGGGTTATTTTGAATGTGAAACTGAAGGCTTCGGCTTCACCCGTGGAC
ACGGCCCGGTAG

protein sequence of jgi.p|Nanoce1779_2|532947

>mRNA_8745-protein ID=mRNA_8745-protein|Name=jgi.p|Nanoce1779_2|532947|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MGEAMRIDIFQEATPSVAFINTFVEQRDAFSMNVMDVPAGTGSGFVWNDE
GYIVTNYHVIRSAESAQVTLTDRDGHQSTYKALLRGFDADKDVAVLRVEA
PPTTLRPIPVGSSSALKVGQSAMAIGNPFGLDHTLTVGVISGLGREVRSP
SGRPISNVIQTDAAINPGNSGGPLLDSAGRLVGMNTAIYSLSGASAGIGF
AIPVDTLKSIVETIIRDGKVVRPLIGITYLDSSQARALGIDKGVLVLDVP
KQSPGAIAGMRGTTRNPLGLIQLGDIIVQINGDDINNEADLFKTLEKYRP
GDKIKIVVKRVISVKEGGNGEGGRGNGLATAETERVILNVKLKASASPVD
TAR*

mRNA from alignment at scaffold_28:18509..19984-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8745 ID=mRNA_8745|Name=jgi.p|Nanoce1779_2|532947|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp|location=Sequence derived from alignment at scaffold_28:18509..19984- (Nannochloropsis oceanica)
ATGGGGGAGGCGATGCGAATCGACATTTTCCAAGAGGCCACGCCCAGCGT
GGCCTTCATAAATACCTTTGTGGAGCAACGGGATGCGTTTTCAATGAATG
TGATGGATGTACCCGCGGGAACTGGGTCGGGCTTTGTTTGGAACGATGAA
GGGTAAGTGGGGAGGAGCGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAAG
GAAAGAAGGAGAGGGGGTCCTTCACTCACCTTCCCTCTCCTCTACTGTCC
CTCCCATTTATCTTGCAGGTATATCGTAACGAACTATCACGTGATTCGGT
CCGCCGAATCCGCGCAAGTCACACTCACTGACCGCGACGGCCACCAGTCA
ACGTACAAAGCCCTCTTGCGTGGTTTTGATGCAGATAAGGACGTGGCGGT
TCTGCGTGTTGAAGCCCCTCCAACCACCCTTCGTCCTATTCCTGTCGGTT
CGTCTTCTGCTTTAAAGGTGGGGCAGTCGGCCATGGCCATTGGCAATCCC
TTCGGGTTGGATCACACGTTGACTGTCGGGGTGATTTCGGGATTAGGGCG
AGAGGTGCGATCCCCCTCAGGGCGTCCCATCAGCAACGTGATTCAGACGG
ATGCAGCCATCAATCCAGGTACATCTCGTCTCTTGTTATCTTCCTCTCCT
CCCTCCCCTTCCTTCCTTCCCTTTGGGTATGGGCATCATCATTTCTTCAA
TTTAAATCGCCTCCATCTTCATCATTATTTGCTCGGCTTCTTTCAAAACA
GGGAATTCGGGTGGACCCCTATTGGACTCTGCCGGTCGCTTGGTGGGCAT
GAATACAGCCATTTATTCTCTCTCTGGTGCGTCGGCAGGTATTGGATTCG
CGATTCCCGTGGATACGCTCAAGTCTATTGTGGAGACGATCATCCGGGAT
GGGAAGGTGGTTCGGCCGTTGATCGGCATCACTTACTTGGACAGCAGCCA
GGCCAGAGCGCTGGGTAAGGAGGGAGAGAAGGAGGGAGGGAAGGAGGGAG
GGATGTACAGAGAAGATGTCAATTGCATCATGCTGTCCCCCCCCCCCCCC
TCGATGACATAGTCGTCCTGAGATGAATATCGCATTAATCATTTCTCCTC
CCCTTCCCCCTTCCTTTTCCCTTTTCCAGGTATTGACAAAGGTGTCCTCG
TCTTAGACGTGCCCAAGCAATCTCCCGGCGCCATCGCCGGAATGAGAGGC
ACTACCCGCAATCCTCTCGGGTTAATTCAGCTGGGGGATATTATCGTTCA
AATCAATGGCGACGATATTAATAACGAAGCGGACCTCTTTAAGACCCTCG
AGAAGTACCGCCCGGGGGATAAGATCAAGATCGTCGTGAAAAGGGTGATA
TCGGTGAAGGAGGGAGGAAATGGGGAAGGAGGGAGGGGGAATGGTTTGGC
AACGGCGGAGACGGAGAGGGTTATTTTGAATGTGAAACTGAAGGCTTCGG
CTTCACCCGTGGACACGGCCCGGTAG

Coding sequence (CDS) from alignment at scaffold_28:18509..19984-

>mRNA_8745 ID=mRNA_8745|Name=jgi.p|Nanoce1779_2|532947|organism=Nannochloropsis oceanica|type=CDS|length=4248bp|location=Sequence derived from alignment at scaffold_28:18509..19984- (Nannochloropsis oceanica)
GTATTGACAAAGGTGTCCTCGTCTTAGACGTGCCCAAGCAATCTCCCGGC
GCCATCGCCGGAATGAGAGGCACTACCCGCAATCCTCTCGGGTTAATTCA
GCTGGGGGATATTATCGTTCAAATCAATGGCGACGATATTAATAACGAAG
CGGACCTCTTTAAGACCCTCGAGAAGTACCGCCCGGGGGATAAGATCAAG
ATCGTCGTGAAAAGGGTGATATCGGTGAAGGAGGGAGGAAATGGGGAAGG
AGGGAGGGGGAATGGTTTGGCAACGGCGGAGACGGAGAGGGTTATTTTGA
ATGTGAAACTGAAGGCTTCGGCTTCACCCGTGGACACGGCCCGGTAGGGA
ATTCGGGTGGACCCCTATTGGACTCTGCCGGTCGCTTGGTGGGCATGAAT
ACAGCCATTTATTCTCTCTCTGGTGCGTCGGCAGGTATTGGATTCGCGAT
TCCCGTGGATACGCTCAAGTCTATTGTGGAGACGATCATCCGGGATGGGA
AGGTGGTTCGGCCGTTGATCGGCATCACTTACTTGGACAGCAGCCAGGCC
AGAGCGCTGGGTATATCGTAACGAACTATCACGTGATTCGGTCCGCCGAA
TCCGCGCAAGTCACACTCACTGACCGCGACGGCCACCAGTCAACGTACAA
AGCCCTCTTGCGTGGTTTTGATGCAGATAAGGACGTGGCGGTTCTGCGTG
TTGAAGCCCCTCCAACCACCCTTCGTCCTATTCCTGTCGGTTCGTCTTCT
GCTTTAAAGGTGGGGCAGTCGGCCATGGCCATTGGCAATCCCTTCGGGTT
GGATCACACGTTGACTGTCGGGGTGATTTCGGGATTAGGGCGAGAGGTGC
GATCCCCCTCAGGGCGTCCCATCAGCAACGTGATTCAGACGGATGCAGCC
ATCAATCCAGATGGGGGAGGCGATGCGAATCGACATTTTCCAAGAGGCCA
CGCCCAGCGTGGCCTTCATAAATACCTTTGTGGAGCAACGGGATGCGTTT
TCAATGAATGTGATGGATGTACCCGCGGGAACTGGGTCGGGCTTTGTTTG
GAACGATGAAGGGTATTGACAAAGGTGTCCTCGTCTTAGACGTGCCCAAG
CAATCTCCCGGCGCCATCGCCGGAATGAGAGGCACTACCCGCAATCCTCT
CGGGTTAATTCAGCTGGGGGATATTATCGTTCAAATCAATGGCGACGATA
TTAATAACGAAGCGGACCTCTTTAAGACCCTCGAGAAGTACCGCCCGGGG
GATAAGATCAAGATCGTCGTGAAAAGGGTGATATCGGTGAAGGAGGGAGG
AAATGGGGAAGGAGGGAGGGGGAATGGTTTGGCAACGGCGGAGACGGAGA
GGGTTATTTTGAATGTGAAACTGAAGGCTTCGGCTTCACCCGTGGACACG
GCCCGGTAGGGAATTCGGGTGGACCCCTATTGGACTCTGCCGGTCGCTTG
GTGGGCATGAATACAGCCATTTATTCTCTCTCTGGTGCGTCGGCAGGTAT
TGGATTCGCGATTCCCGTGGATACGCTCAAGTCTATTGTGGAGACGATCA
TCCGGGATGGGAAGGTGGTTCGGCCGTTGATCGGCATCACTTACTTGGAC
AGCAGCCAGGCCAGAGCGCTGGGTATATCGTAACGAACTATCACGTGATT
CGGTCCGCCGAATCCGCGCAAGTCACACTCACTGACCGCGACGGCCACCA
GTCAACGTACAAAGCCCTCTTGCGTGGTTTTGATGCAGATAAGGACGTGG
CGGTTCTGCGTGTTGAAGCCCCTCCAACCACCCTTCGTCCTATTCCTGTC
GGTTCGTCTTCTGCTTTAAAGGTGGGGCAGTCGGCCATGGCCATTGGCAA
TCCCTTCGGGTTGGATCACACGTTGACTGTCGGGGTGATTTCGGGATTAG
GGCGAGAGGTGCGATCCCCCTCAGGGCGTCCCATCAGCAACGTGATTCAG
ACGGATGCAGCCATCAATCCAGATGGGGGAGGCGATGCGAATCGACATTT
TCCAAGAGGCCACGCCCAGCGTGGCCTTCATAAATACCTTTGTGGAGCAA
CGGGATGCGTTTTCAATGAATGTGATGGATGTACCCGCGGGAACTGGGTC
GGGCTTTGTTTGGAACGATGAAGGGTATTGACAAAGGTGTCCTCGTCTTA
GACGTGCCCAAGCAATCTCCCGGCGCCATCGCCGGAATGAGAGGCACTAC
CCGCAATCCTCTCGGGTTAATTCAGCTGGGGGATATTATCGTTCAAATCA
ATGGCGACGATATTAATAACGAAGCGGACCTCTTTAAGACCCTCGAGAAG
TACCGCCCGGGGGATAAGATCAAGATCGTCGTGAAAAGGGTGATATCGGT
GAAGGAGGGAGGAAATGGGGAAGGAGGGAGGGGGAATGGTTTGGCAACGG
CGGAGACGGAGAGGGTTATTTTGAATGTGAAACTGAAGGCTTCGGCTTCA
CCCGTGGACACGGCCCGGTAGGGAATTCGGGTGGACCCCTATTGGACTCT
GCCGGTCGCTTGGTGGGCATGAATACAGCCATTTATTCTCTCTCTGGTGC
GTCGGCAGGTATTGGATTCGCGATTCCCGTGGATACGCTCAAGTCTATTG
TGGAGACGATCATCCGGGATGGGAAGGTGGTTCGGCCGTTGATCGGCATC
ACTTACTTGGACAGCAGCCAGGCCAGAGCGCTGGGTATATCGTAACGAAC
TATCACGTGATTCGGTCCGCCGAATCCGCGCAAGTCACACTCACTGACCG
CGACGGCCACCAGTCAACGTACAAAGCCCTCTTGCGTGGTTTTGATGCAG
ATAAGGACGTGGCGGTTCTGCGTGTTGAAGCCCCTCCAACCACCCTTCGT
CCTATTCCTGTCGGTTCGTCTTCTGCTTTAAAGGTGGGGCAGTCGGCCAT
GGCCATTGGCAATCCCTTCGGGTTGGATCACACGTTGACTGTCGGGGTGA
TTTCGGGATTAGGGCGAGAGGTGCGATCCCCCTCAGGGCGTCCCATCAGC
AACGTGATTCAGACGGATGCAGCCATCAATCCAGATGGGGGAGGCGATGC
GAATCGACATTTTCCAAGAGGCCACGCCCAGCGTGGCCTTCATAAATACC
TTTGTGGAGCAACGGGATGCGTTTTCAATGAATGTGATGGATGTACCCGC
GGGAACTGGGTCGGGCTTTGTTTGGAACGATGAAGGGTATTGACAAAGGT
GTCCTCGTCTTAGACGTGCCCAAGCAATCTCCCGGCGCCATCGCCGGAAT
GAGAGGCACTACCCGCAATCCTCTCGGGTTAATTCAGCTGGGGGATATTA
TCGTTCAAATCAATGGCGACGATATTAATAACGAAGCGGACCTCTTTAAG
ACCCTCGAGAAGTACCGCCCGGGGGATAAGATCAAGATCGTCGTGAAAAG
GGTGATATCGGTGAAGGAGGGAGGAAATGGGGAAGGAGGGAGGGGGAATG
GTTTGGCAACGGCGGAGACGGAGAGGGTTATTTTGAATGTGAAACTGAAG
GCTTCGGCTTCACCCGTGGACACGGCCCGGTAGGGAATTCGGGTGGACCC
CTATTGGACTCTGCCGGTCGCTTGGTGGGCATGAATACAGCCATTTATTC
TCTCTCTGGTGCGTCGGCAGGTATTGGATTCGCGATTCCCGTGGATACGC
TCAAGTCTATTGTGGAGACGATCATCCGGGATGGGAAGGTGGTTCGGCCG
TTGATCGGCATCACTTACTTGGACAGCAGCCAGGCCAGAGCGCTGGGTAT
ATCGTAACGAACTATCACGTGATTCGGTCCGCCGAATCCGCGCAAGTCAC
ACTCACTGACCGCGACGGCCACCAGTCAACGTACAAAGCCCTCTTGCGTG
GTTTTGATGCAGATAAGGACGTGGCGGTTCTGCGTGTTGAAGCCCCTCCA
ACCACCCTTCGTCCTATTCCTGTCGGTTCGTCTTCTGCTTTAAAGGTGGG
GCAGTCGGCCATGGCCATTGGCAATCCCTTCGGGTTGGATCACACGTTGA
CTGTCGGGGTGATTTCGGGATTAGGGCGAGAGGTGCGATCCCCCTCAGGG
CGTCCCATCAGCAACGTGATTCAGACGGATGCAGCCATCAATCCAGATGG
GGGAGGCGATGCGAATCGACATTTTCCAAGAGGCCACGCCCAGCGTGGCC
TTCATAAATACCTTTGTGGAGCAACGGGATGCGTTTTCAATGAATGTGAT
GGATGTACCCGCGGGAACTGGGTCGGGCTTTGTTTGGAACGATGAAGG

Synonyms

Publications