jgi.p|Nanoce1779_2|633123, mRNA_8743 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633123
Unique NamemRNA_8743
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1114
Alignment locationscaffold_28:12378..14190 -

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Properties
Property NameValue
TranscriptId633209
TrackFilteredModels2
ProteinId633123
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:12378..14190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633123gene_8743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633123mRNA_8743-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8743CDS_8743Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8743 ID=mRNA_8743|Name=jgi.p|Nanoce1779_2|633123|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
CAGACCTCACACTTAGTAAGAATGAAGTTCTTGGCTGCCACCCTTGTCGC
CATCGCGGCCCCCGCCATGGCCTTCATGCCCGCTGCCCGCGTGCCTGCCA
CCCCCGTCACGGCCGTCTCGGCCGCGATCAAGGCCGGCGGCGACTACTAC
CCCGGTCAGGTAGACTATGGCAACTCCAAGATTGATGTCTTTGACACTGT
CAAGACAAACGGCAAATTCAACCAGCTGGCCAAGGCCCTTGCCGAGACTG
GCTTGGACAAGGCCCTCGCGAAGGAAAACGGTATTTTCTGCCTGTACGCG
CCCACGGACGAGGCGTTTGACAAGGCCGGTGGGGTGGATGAACTCCTCAA
GGACAAGGCGGCTTTGACTGAAGTCCTCAAGTACCACGTTGTAAAGCTGT
TCGTGAAGGACAAGGAGCACATCCGTTCTTTCCGTCTGTCCAACAAGGTC
ACCCTTCAGGGCGGCAAGGTCCGTGTGCAGGTGAAGGCCAACCCTGACGG
CGAGTCCTTCGTCATCTTTAACAATGGCGAGGCTGAGTGCGTGGATGGCC
TTTCTGACATTGATGCCGTCAACGGCCACGTCCACGGTATCTCCGGCATC
TTGACCCCCCAGGCCGGCGGCACCATCCCCGTGAAATAAGCGCTCACATT
GCGCCGTTTCGTTCCTTCCTCCTTCCCTCCCTCGTCCTCTCCTTGCCTCA
TCCACCACCAATCTCTGTGTGGGCTCTCTTTCTCCCGCAGTTCTGATGAA
AACGGAATGTTACAAAGGGGCCTCTGAATGTACCGTTTGCTACTCCTCTT
TCATGCTTTCCTGTTCACATTATAGGTTGTGTGAGGTGGTCTGAGGGTGA
GTGTGCCTGTCCCTTGTGTCTGTGGGTGCGTTTGACATATTTCCTTTGTT
TGGATCCCTTTAACTATTGCCTGAAGAGGGTTCTTTCTCTTTCGCTACTT
TTTCTGAAAGGAGCAGGGTAACGTGATTGTTGTCCTTGCGCTTCGTTAGA
AAGGGGAGTGGTAGGAAGACAATCGTCAGACCATTTTAGATGTCGTGTAA
ATGCGAAAGAACCAAAACAAGGAAAGAAAATGCCACCGCTCGTCGTCCTC
GGTCGAATGAACAC
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protein sequence of jgi.p|Nanoce1779_2|633123

>mRNA_8743-protein ID=mRNA_8743-protein|Name=jgi.p|Nanoce1779_2|633123|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKFLAATLVAIAAPAMAFMPAARVPATPVTAVSAAIKAGGDYYPGQVDYG
NSKIDVFDTVKTNGKFNQLAKALAETGLDKALAKENGIFCLYAPTDEAFD
KAGGVDELLKDKAALTEVLKYHVVKLFVKDKEHIRSFRLSNKVTLQGGKV
RVQVKANPDGESFVIFNNGEAECVDGLSDIDAVNGHVHGISGILTPQAGG
TIPVK*
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mRNA from alignment at scaffold_28:12378..14190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8743 ID=mRNA_8743|Name=jgi.p|Nanoce1779_2|633123|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp|location=Sequence derived from alignment at scaffold_28:12378..14190- (Nannochloropsis oceanica)
CAGACCTCACACTTAGTAAGAATGAAGTTCTTGGCTGCCACCCTTGTCGC
CATCGCGGCCCCCGCCATGGCCTTCATGCCCGCTGCCCGTAAGTCCAAAC
CCGTTAGTGTTGTCGCCTCATCCTCCTCTTTCCCTTTGTGTGCGTGACAC
CCATCTAATCTTAAGCCTTGTGCTTGACTACTGGCCCTAGAAGCAGCTCT
AGTGAGAGCAACACCGCACCATGCCCACACTCTATTCGGCTCCGTTCTGT
CCCTCCCCCAAACACTGACCCATCAGACGACCCGTAGCCGAGCCATCTCC
CCTAATCTGTGTTTGGGGGAAAAAACATCCTTTTCTCAACCCTAATCTTC
TCACCACAAACCACCCATTCTTTCTAACTCGCGCTAGTTATGCCGTAACC
CTACCCCCTTCTCTTCACTTATCCACCCTCTCCCTTCCTTCCCCCTCACA
GGCGTGCCTGCCACCCCCGTCACGGCCGTCTCGGCCGCGATCAAGGCCGG
CGGCGACTACTACCCCGGTCAGGTAGACTATGGCAACTCCAAGATTGATG
TCTTTGACACTGTCAAGACAAACGGCAAATTCAACCAGCTGGCCAAGGCC
CTTGCCGAGACTGGCTTGGACAAGGCCCTCGCGAAGGAAAACGGTATTTT
CTGCCTGTACGCGCCCACGGACGAGGCGTTTGACAAGGCCGGTGGGGTGG
ATGAACTCCTCAAGGACAAGGCGGCTTTGACTGAAGTCCTCAAGTACCAC
GTTGTAAAGCTGTTCGTGAAGGACAAGGAGCACATCCGTTCTTTCCGTCT
GTCCAACAAGGTATGTCGGGAAGGAAGGAGGGAGGTTGGGGGGGAGATGT
GTGTGTGTGTGTGTACTGGCTGATGTTCCGGGATGATGTCGATCCAACAA
GCATAGCTCTCCTCTAACTCCATATAACTCACTCACGTCTTCTTCCATTC
CTCCTATGCCTCCATCATTCTGCAGGTCACCCTTCAGGGCGGCAAGGTCC
GTGTGCAGGTGAAGGCCAACCCTGACGGCGAGTCCTTCGTCATCTTTAAC
AATGGCGAGGCTGAGTGCGTGGATGGCCTTTCTGACATTGATGCCGTCAA
CGGCCACGTCCACGGTATCTCCGGCATCTTGGTACGCTTCGTAGTCCCTT
ATCTATTTCCCCCCCTTTGTATGCGAATACCACCTCTACTTTTCGTTTCC
TGTCTGTGTGCATATGTTACACAATGTCCACCCTTTTTCCTGTCATTTTT
GGCTTCGGCTAACTATCTCTCTTCCCCGTGTTCTCCCTCCCACCTACAAC
AGACCCCCCAGGCCGGCGGCACCATCCCCGTGAAATAAGCGCTCACATTG
CGCCGTTTCGTTCCTTCCTCCTTCCCTCCCTCGTCCTCTCCTTGCCTCAT
CCACCACCAATCTCTGTGTGGGCTCTCTTTCTCCCGCAGTTCTGATGAAA
ACGGAATGTTACAAAGGGGCCTCTGAATGTACCGTTTGCTACTCCTCTTT
CATGCTTTCCTGTTCACATTATAGGTTGTGTGAGGTGGTCTGAGGGTGAG
TGTGCCTGTCCCTTGTGTCTGTGGGTGCGTTTGACATATTTCCTTTGTTT
GGATCCCTTTAACTATTGCCTGAAGAGGGTTCTTTCTCTTTCGCTACTTT
TTCTGAAAGGAGCAGGGTAACGTGATTGTTGTCCTTGCGCTTCGTTAGAA
AGGGGAGTGGTAGGAAGACAATCGTCAGACCATTTTAGATGTCGTGTAAA
TGCGAAAGAACCAAAACAAGGAAAGAAAATGCCACCGCTCGTCGTCCTCG
GTCGAATGAACAC
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Coding sequence (CDS) from alignment at scaffold_28:12378..14190-

>mRNA_8743 ID=mRNA_8743|Name=jgi.p|Nanoce1779_2|633123|organism=Nannochloropsis oceanica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_28:12378..14190- (Nannochloropsis oceanica)
ACCCCCCAGGCCGGCGGCACCATCCCCGTGAAATAAGTCACCCTTCAGGG
CGGCAAGGTCCGTGTGCAGGTGAAGGCCAACCCTGACGGCGAGTCCTTCG
TCATCTTTAACAATGGCGAGGCTGAGTGCGTGGATGGCCTTTCTGACATT
GATGCCGTCAACGGCCACGTCCACGGTATCTCCGGCATCTTGGCGTGCCT
GCCACCCCCGTCACGGCCGTCTCGGCCGCGATCAAGGCCGGCGGCGACTA
CTACCCCGGTCAGGTAGACTATGGCAACTCCAAGATTGATGTCTTTGACA
CTGTCAAGACAAACGGCAAATTCAACCAGCTGGCCAAGGCCCTTGCCGAG
ACTGGCTTGGACAAGGCCCTCGCGAAGGAAAACGGTATTTTCTGCCTGTA
CGCGCCCACGGACGAGGCGTTTGACAAGGCCGGTGGGGTGGATGAACTCC
TCAAGGACAAGGCGGCTTTGACTGAAGTCCTCAAGTACCACGTTGTAAAG
CTGTTCGTGAAGGACAAGGAGCACATCCGTTCTTTCCGTCTGTCCAACAA
GATGAAGTTCTTGGCTGCCACCCTTGTCGCCATCGCGGCCCCCGCCATGG
CCTTCATGCCCGCTGCCCACCCCCCAGGCCGGCGGCACCATCCCCGTGAA
ATAAGTCACCCTTCAGGGCGGCAAGGTCCGTGTGCAGGTGAAGGCCAACC
CTGACGGCGAGTCCTTCGTCATCTTTAACAATGGCGAGGCTGAGTGCGTG
GATGGCCTTTCTGACATTGATGCCGTCAACGGCCACGTCCACGGTATCTC
CGGCATCTTGGCGTGCCTGCCACCCCCGTCACGGCCGTCTCGGCCGCGAT
CAAGGCCGGCGGCGACTACTACCCCGGTCAGGTAGACTATGGCAACTCCA
AGATTGATGTCTTTGACACTGTCAAGACAAACGGCAAATTCAACCAGCTG
GCCAAGGCCCTTGCCGAGACTGGCTTGGACAAGGCCCTCGCGAAGGAAAA
CGGTATTTTCTGCCTGTACGCGCCCACGGACGAGGCGTTTGACAAGGCCG
GTGGGGTGGATGAACTCCTCAAGGACAAGGCGGCTTTGACTGAAGTCCTC
AAGTACCACGTTGTAAAGCTGTTCGTGAAGGACAAGGAGCACATCCGTTC
TTTCCGTCTGTCCAACAAGATGAAGTTCTTGGCTGCCACCCTTGTCGCCA
TCGCGGCCCCCGCCATGGCCTTCATGCCCGCTGCCCACCCCCCAGGCCGG
CGGCACCATCCCCGTGAAATAAGTCACCCTTCAGGGCGGCAAGGTCCGTG
TGCAGGTGAAGGCCAACCCTGACGGCGAGTCCTTCGTCATCTTTAACAAT
GGCGAGGCTGAGTGCGTGGATGGCCTTTCTGACATTGATGCCGTCAACGG
CCACGTCCACGGTATCTCCGGCATCTTGGCGTGCCTGCCACCCCCGTCAC
GGCCGTCTCGGCCGCGATCAAGGCCGGCGGCGACTACTACCCCGGTCAGG
TAGACTATGGCAACTCCAAGATTGATGTCTTTGACACTGTCAAGACAAAC
GGCAAATTCAACCAGCTGGCCAAGGCCCTTGCCGAGACTGGCTTGGACAA
GGCCCTCGCGAAGGAAAACGGTATTTTCTGCCTGTACGCGCCCACGGACG
AGGCGTTTGACAAGGCCGGTGGGGTGGATGAACTCCTCAAGGACAAGGCG
GCTTTGACTGAAGTCCTCAAGTACCACGTTGTAAAGCTGTTCGTGAAGGA
CAAGGAGCACATCCGTTCTTTCCGTCTGTCCAACAAGATGAAGTTCTTGG
CTGCCACCCTTGTCGCCATCGCGGCCCCCGCCATGGCCTTCATGCCCGCT
GCCCACCCCCCAGGCCGGCGGCACCATCCCCGTGAAATAAGTCACCCTTC
AGGGCGGCAAGGTCCGTGTGCAGGTGAAGGCCAACCCTGACGGCGAGTCC
TTCGTCATCTTTAACAATGGCGAGGCTGAGTGCGTGGATGGCCTTTCTGA
CATTGATGCCGTCAACGGCCACGTCCACGGTATCTCCGGCATCTTGGCGT
GCCTGCCACCCCCGTCACGGCCGTCTCGGCCGCGATCAAGGCCGGCGGCG
ACTACTACCCCGGTCAGGTAGACTATGGCAACTCCAAGATTGATGTCTTT
GACACTGTCAAGACAAACGGCAAATTCAACCAGCTGGCCAAGGCCCTTGC
CGAGACTGGCTTGGACAAGGCCCTCGCGAAGGAAAACGGTATTTTCTGCC
TGTACGCGCCCACGGACGAGGCGTTTGACAAGGCCGGTGGGGTGGATGAA
CTCCTCAAGGACAAGGCGGCTTTGACTGAAGTCCTCAAGTACCACGTTGT
AAAGCTGTTCGTGAAGGACAAGGAGCACATCCGTTCTTTCCGTCTGTCCA
ACAAGATGAAGTTCTTGGCTGCCACCCTTGTCGCCATCGCGGCCCCCGCC
ATGGCCTTCATGCCCGCTGCCC
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Synonyms
Publications