jgi.p|Nanoce1779_2|217798, mRNA_8742 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|217798
Unique Name	mRNA_8742
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2098
Alignment location	scaffold_28:9936..12033 -

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Properties


Property Name	Value
TranscriptId	217884
Track	FilteredModels2
ProteinId	217798

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:9936..12033 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|217798	gene_8742	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|217798	mRNA_8742-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8742	CDS_8742	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:9936..12033-
coding sequence from alignment at scaffold_28:9936..12033-

mRNA sequence

>mRNA_8742 ID=mRNA_8742|Name=jgi.p|Nanoce1779_2|217798|organism=Nannochloropsis oceanica|type=mRNA|length=2098bp
GTCAATCAGGTTTGGTGGTGCGCATGCAACGAGCATAATCAAGCTTCTCA
CTTGCCCTACTCTGGCCATGACCTCCCGGCCGTCTCCGCTGCAACCCACC
AAGCGCTTGCCCAAGCCTGGCTTGCAGGGCCCGGAGAAGCAGCTGCTGGA
TGCCAAGCTATTAGAGATGCAATTGGGTCTATTGTCTATCGATGAGGTTA
GGAGGGAAGGGAAAAGGGCGGGAGGACGGCATTGTGATCATTTCCTCCAG
GCATTCACATGCGGTATCGCCACACGCATTAACACAGCCCGCGACCGAAC
AAGAGCTCCGGGACTGCCAACTCTGGTTCAGTCCCGAGCATTTTGCGGGA
GTAGTGGAAGAGCTAGCCTCGGATGGACACTGTGGTTATCCCCTTTGTAA
GAAGCAACTCCTAAGCGAGCTTGGCGGCGACCGCGACATCTCCCACAGCC
GACGTCTCCAGAAACCGGGACAGAAACGCCTGGACATACGCCGCAAGCAA
ATAGTGGACGTCACCCGAGTTAACGCCATGTTTTGCAGCGATCTTTGCGA
AGGAGCAGCCCATTCGTTTGTCGCCCAGCTCTCCACGGAAGGCATCTTCT
TTCGACCCATTGCCCGCACCTATTTACAGCAACAGCAGCAGCTCAAGTCT
TTGCCTCCTACGTTTGTGTACGACATGGTCTCGAAAGCGCACAAGGGAGA
ATTGAAAAAGACAAAGGAGGTCGAAAAGGAGGAAGAGAGAGGAGGCAGCA
CACAGCCGGCACAGAAGGAAGGGGAGGAAGACAAATCTCAGGACCGTCTC
CCTGTCCGCGCACGTCGTCGGTCCCTCCCAAAGAAAGTGCAGGTCAGTAA
CATCAGCGCTATGAACAGGAAGAACGCACTGACAACAAAGGGGGAAGATG
ATCGTTTGCCTCTCAAAATGGGAGTAATGGAGAGAGAAAGCCCAGCGGCA
CCCCAACCCTTGAGCGTGTGGGTAGCGCAGGGGGAAGCGGTAGAGGGGTA
TGTGGCCAGGATGGGGGTATCTGTAAGAGGATATGATGATCCTCGGGGGG
GAGAGCAAGAGGAAGAACGGTTCAAGGAAGGGGAGGAAGGGGAGGGGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGAGGTGGTGGT
AACAGCGGCAGGAGACGAGGACGACGACACGGACGAGCGAGATGAGCCGT
TTGGGGCCAAAGTTATTCGATTGAAAGATTTGGCAGAAGGTGCCCGGACA
GTGGTGGAAGAAGACTTTTACATGCAGTTGTGGTCCAGTTTGAGTGGGTG
GCTTACCCCCGCTTCTCGTCAATATATTTCTCTCTTAGTCCAGAACGGCG
GAGACGAAAAAGCGGCCTTGAGAATTGTGCATGCGAATCCAACGGACCCT
CTACAATTGCAGCGGGCCTTGTTGGATGTCCAGCAGAGGGAGGGGGCGTT
GGGGTGTATGTTGGTGCATCACGTGACGGCTGCCATGGAGGCCGTAGGAT
TGGGGAGGAGATTGTCGCCCTCCGCGGCGACGAGTCGAATTAAGGGGTTG
TTGTCGACGTTTGATATGTATCGACCGTTGCCCCCGTATTTGGGCTCGAA
GCATTACATGGCTATGGCGATGCTGTTTGTCGAGGCGTTGTTTGTGTCCG
AGTTGGAAGGAGCGGGAAATGGGGAGGAGAAAAATAGAGGGGAGGAAAAA
GAGAAGGAGAGGAAGTTATACCTGGAGAAAGTGGGTTTATCGAAGGCCGA
ATATACGTCCCTACGAGGGGATCTGGAACAGCCATTGTAAATTATGAAAT
AAAAAGGAAATAAAAATTGGGTTTTGATTTTAGGGTGGGGAGGTTGGCAC
AGGTGGCCATTTACACCATAGATTGATTGATTTATGCACTCTCCTCCCTA
ACCACCCATAGTCTCCCTCTCCACACATATCAATCGGCTTATACGCACAT
AACTGAATTCAACCAAACTGTGAACCACGGTTTGAGGCGATCTCACGAAA
GAAAAAAATTCAACCACAGCCCCAGAGAAACACGATCGTGATGTGCTCCG
AGAGCCTCGTGTCTCCTCCCTTCTGAACAACCACGAACTTTCACTGCC

protein sequence of jgi.p|Nanoce1779_2|217798

>mRNA_8742-protein ID=mRNA_8742-protein|Name=jgi.p|Nanoce1779_2|217798|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MRLGGKGKGREDGIVIISSRHSHAVSPHALTQPATEQELRDCQLWFSPEH
FAGVVEELASDGHCGYPLCKKQLLSELGGDRDISHSRRLQKPGQKRLDIR
RKQIVDVTRVNAMFCSDLCEGAAHSFVAQLSTEGIFFRPIARTYLQQQQQ
LKSLPPTFVYDMVSKAHKGELKKTKEVEKEEERGGSTQPAQKEGEEDKSQ
DRLPVRARRRSLPKKVQVSNISAMNRKNALTTKGEDDRLPLKMGVMERES
PAAPQPLSVWVAQGEAVEGYVARMGVSVRGYDDPRGGEQEEERFKEGEEG
EGGEEEEEEEEEEEEGEVVVTAAGDEDDDTDERDEPFGAKVIRLKDLAEG
ARTVVEEDFYMQLWSSLSGWLTPASRQYISLLVQNGGDEKAALRIVHANP
TDPLQLQRALLDVQQREGALGCMLVHHVTAAMEAVGLGRRLSPSAATSRI
KGLLSTFDMYRPLPPYLGSKHYMAMAMLFVEALFVSELEGAGNGEEKNRG
EEKEKERKLYLEKVGLSKAEYTSLRGDLEQPL*

mRNA from alignment at scaffold_28:9936..12033-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8742 ID=mRNA_8742|Name=jgi.p|Nanoce1779_2|217798|organism=Nannochloropsis oceanica|type=mRNA|length=2098bp|location=Sequence derived from alignment at scaffold_28:9936..12033- (Nannochloropsis oceanica)
GTCAATCAGGTTTGGTGGTGCGCATGCAACGAGCATAATCAAGCTTCTCA
CTTGCCCTACTCTGGCCATGACCTCCCGGCCGTCTCCGCTGCAACCCACC
AAGCGCTTGCCCAAGCCTGGCTTGCAGGGCCCGGAGAAGCAGCTGCTGGA
TGCCAAGCTATTAGAGATGCAATTGGGTCTATTGTCTATCGATGAGGTTA
GGAGGGAAGGGAAAAGGGCGGGAGGACGGCATTGTGATCATTTCCTCCAG
GCATTCACATGCGGTATCGCCACACGCATTAACACAGCCCGCGACCGAAC
AAGAGCTCCGGGACTGCCAACTCTGGTTCAGTCCCGAGCATTTTGCGGGA
GTAGTGGAAGAGCTAGCCTCGGATGGACACTGTGGTTATCCCCTTTGTAA
GAAGCAACTCCTAAGCGAGCTTGGCGGCGACCGCGACATCTCCCACAGCC
GACGTCTCCAGAAACCGGGACAGAAACGCCTGGACATACGCCGCAAGCAA
ATAGTGGACGTCACCCGAGTTAACGCCATGTTTTGCAGCGATCTTTGCGA
AGGAGCAGCCCATTCGTTTGTCGCCCAGCTCTCCACGGAAGGCATCTTCT
TTCGACCCATTGCCCGCACCTATTTACAGCAACAGCAGCAGCTCAAGTCT
TTGCCTCCTACGTTTGTGTACGACATGGTCTCGAAAGCGCACAAGGGAGA
ATTGAAAAAGACAAAGGAGGTCGAAAAGGAGGAAGAGAGAGGAGGCAGCA
CACAGCCGGCACAGAAGGAAGGGGAGGAAGACAAATCTCAGGACCGTCTC
CCTGTCCGCGCACGTCGTCGGTCCCTCCCAAAGAAAGTGCAGGTCAGTAA
CATCAGCGCTATGAACAGGAAGAACGCACTGACAACAAAGGGGGAAGATG
ATCGTTTGCCTCTCAAAATGGGAGTAATGGAGAGAGAAAGCCCAGCGGCA
CCCCAACCCTTGAGCGTGTGGGTAGCGCAGGGGGAAGCGGTAGAGGGGTA
TGTGGCCAGGATGGGGGTATCTGTAAGAGGATATGATGATCCTCGGGGGG
GAGAGCAAGAGGAAGAACGGTTCAAGGAAGGGGAGGAAGGGGAGGGGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGAGGTGGTGGT
AACAGCGGCAGGAGACGAGGACGACGACACGGACGAGCGAGATGAGCCGT
TTGGGGCCAAAGTTATTCGATTGAAAGATTTGGCAGAAGGTGCCCGGACA
GTGGTGGAAGAAGACTTTTACATGCAGTTGTGGTCCAGTTTGAGTGGGTG
GCTTACCCCCGCTTCTCGTCAATATATTTCTCTCTTAGTCCAGAACGGCG
GAGACGAAAAAGCGGCCTTGAGAATTGTGCATGCGAATCCAACGGACCCT
CTACAATTGCAGCGGGCCTTGTTGGATGTCCAGCAGAGGGAGGGGGCGTT
GGGGTGTATGTTGGTGCATCACGTGACGGCTGCCATGGAGGCCGTAGGAT
TGGGGAGGAGATTGTCGCCCTCCGCGGCGACGAGTCGAATTAAGGGGTTG
TTGTCGACGTTTGATATGTATCGACCGTTGCCCCCGTATTTGGGCTCGAA
GCATTACATGGCTATGGCGATGCTGTTTGTCGAGGCGTTGTTTGTGTCCG
AGTTGGAAGGAGCGGGAAATGGGGAGGAGAAAAATAGAGGGGAGGAAAAA
GAGAAGGAGAGGAAGTTATACCTGGAGAAAGTGGGTTTATCGAAGGCCGA
ATATACGTCCCTACGAGGGGATCTGGAACAGCCATTGTAAATTATGAAAT
AAAAAGGAAATAAAAATTGGGTTTTGATTTTAGGGTGGGGAGGTTGGCAC
AGGTGGCCATTTACACCATAGATTGATTGATTTATGCACTCTCCTCCCTA
ACCACCCATAGTCTCCCTCTCCACACATATCAATCGGCTTATACGCACAT
AACTGAATTCAACCAAACTGTGAACCACGGTTTGAGGCGATCTCACGAAA
GAAAAAAATTCAACCACAGCCCCAGAGAAACACGATCGTGATGTGCTCCG
AGAGCCTCGTGTCTCCTCCCTTCTGAACAACCACGAACTTTCACTGCC

Coding sequence (CDS) from alignment at scaffold_28:9936..12033-

>mRNA_8742 ID=mRNA_8742|Name=jgi.p|Nanoce1779_2|217798|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at scaffold_28:9936..12033- (Nannochloropsis oceanica)
ATGAGGTTAGGAGGGAAGGGAAAAGGGCGGGAGGACGGCATTGTGATCAT
TTCCTCCAGGCATTCACATGCGGTATCGCCACACGCATTAACACAGCCCG
CGACCGAACAAGAGCTCCGGGACTGCCAACTCTGGTTCAGTCCCGAGCAT
TTTGCGGGAGTAGTGGAAGAGCTAGCCTCGGATGGACACTGTGGTTATCC
CCTTTGTAAGAAGCAACTCCTAAGCGAGCTTGGCGGCGACCGCGACATCT
CCCACAGCCGACGTCTCCAGAAACCGGGACAGAAACGCCTGGACATACGC
CGCAAGCAAATAGTGGACGTCACCCGAGTTAACGCCATGTTTTGCAGCGA
TCTTTGCGAAGGAGCAGCCCATTCGTTTGTCGCCCAGCTCTCCACGGAAG
GCATCTTCTTTCGACCCATTGCCCGCACCTATTTACAGCAACAGCAGCAG
CTCAAGTCTTTGCCTCCTACGTTTGTGTACGACATGGTCTCGAAAGCGCA
CAAGGGAGAATTGAAAAAGACAAAGGAGGTCGAAAAGGAGGAAGAGAGAG
GAGGCAGCACACAGCCGGCACAGAAGGAAGGGGAGGAAGACAAATCTCAG
GACCGTCTCCCTGTCCGCGCACGTCGTCGGTCCCTCCCAAAGAAAGTGCA
GGTCAGTAACATCAGCGCTATGAACAGGAAGAACGCACTGACAACAAAGG
GGGAAGATGATCGTTTGCCTCTCAAAATGGGAGTAATGGAGAGAGAAAGC
CCAGCGGCACCCCAACCCTTGAGCGTGTGGGTAGCGCAGGGGGAAGCGGT
AGAGGGGTATGTGGCCAGGATGGGGGTATCTGTAAGAGGATATGATGATC
CTCGGGGGGGAGAGCAAGAGGAAGAACGGTTCAAGGAAGGGGAGGAAGGG
GAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGA
GGTGGTGGTAACAGCGGCAGGAGACGAGGACGACGACACGGACGAGCGAG
ATGAGCCGTTTGGGGCCAAAGTTATTCGATTGAAAGATTTGGCAGAAGGT
GCCCGGACAGTGGTGGAAGAAGACTTTTACATGCAGTTGTGGTCCAGTTT
GAGTGGGTGGCTTACCCCCGCTTCTCGTCAATATATTTCTCTCTTAGTCC
AGAACGGCGGAGACGAAAAAGCGGCCTTGAGAATTGTGCATGCGAATCCA
ACGGACCCTCTACAATTGCAGCGGGCCTTGTTGGATGTCCAGCAGAGGGA
GGGGGCGTTGGGGTGTATGTTGGTGCATCACGTGACGGCTGCCATGGAGG
CCGTAGGATTGGGGAGGAGATTGTCGCCCTCCGCGGCGACGAGTCGAATT
AAGGGGTTGTTGTCGACGTTTGATATGTATCGACCGTTGCCCCCGTATTT
GGGCTCGAAGCATTACATGGCTATGGCGATGCTGTTTGTCGAGGCGTTGT
TTGTGTCCGAGTTGGAAGGAGCGGGAAATGGGGAGGAGAAAAATAGAGGG
GAGGAAAAAGAGAAGGAGAGGAAGTTATACCTGGAGAAAGTGGGTTTATC
GAAGGCCGAATATACGTCCCTACGAGGGGATCTGGAACAGCCATTGTAA

Synonyms

Publications