jgi.p|Nanoce1779_2|603829, mRNA_8741 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603829
Unique NamemRNA_8741
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length927
Alignment locationscaffold_28:8973..9899 +

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Properties
Property NameValue
TranscriptId603915
TrackFilteredModels2
ProteinId603829
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:8973..9899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603829gene_8741Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603829mRNA_8741-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8741CDS_8741Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8741 ID=mRNA_8741|Name=jgi.p|Nanoce1779_2|603829|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
CCCCCCATCTGCCAACCCCGTAGCTGCCGCCATTCTCACACCTAAATCCC
CCGGTCCTTGGGGTTCATAGATCCAGTCTAAGCCCAACCATGCCTTCATC
TTGCTCTCTCCATCCTCCCCTGCGAGAGCATCGTCATACCGGATCCGACA
GTCCACAACTTTCCGTTCGCTGATGCTGCTGCTACTACTACTTCTGCTAC
TGCTGCCCTTTCGAAAAGTATCCAACGTCTGTAACGCCTGTCGGACCAAC
TGTCGATGAAGCCTCGCCGCTCCCTCTTTCCCCAAGGCAGGGATCATTCT
CGTCTTGGCACGCCCAGGCACAGGGTACTTGGTGAAAAGGTACACACGCG
GTGCCAAGCCCGATGATAACCCTCTTGATTGAGACGCGCGAGTGGGTGGG
TTGAACGTGTTGTCGTTAGGCACAGCGTCGTTGTTGTTGTTGCTATTACC
CTCGCCCCACCAGACAGGTTGTGTGGGAGGGGGTGGGGGAGGGTTACCGT
GGTCGAGCATGGGGTTAATGATGTTGAAAGCTGCTGTCGCGGCCGTGGCG
GATGAAAAGAAAGAGGCAGAGGTCAAGGATGAGAAGTGGGGTTGTTGTTG
GTCGTGATGGTGAGGGCAGGGAGATGTGAGATTGGTGCTGCCAGAAGAAG
GACGGTGCAGCACCTTCTGCTGCTGCTGCTGCTGCTGCCGTCTTGGCCAG
GGTTCCAACCAACCACTCTTTCTTCTCGCCCAGGCCGACTTGGACAGGAG
CAGGACAAGGAGGAAGGGTGCTACCGGGGCTGCGGGGGAACGCATTTCGG
CGCAGTGCGTGTCTACTTGATGTTGAGGCGGCTTGGCAACCGACACGACT
CGCGAACGAGCAGAGAAGCGGAGCCTGCCTTGATGGTGTGGTTGCGATAG
GAAATGTGCCGCGGCTGTGATGTGCTG
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protein sequence of jgi.p|Nanoce1779_2|603829

>mRNA_8741-protein ID=mRNA_8741-protein|Name=jgi.p|Nanoce1779_2|603829|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MVRAGRCEIGAARRRTVQHLLLLLLLLPSWPGFQPTTLSSRPGRLGQEQD
KEEGCYRGCGGTHFGAVRVYLMLRRLGNRHDSRTSREAEPALMVWLR*
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mRNA from alignment at scaffold_28:8973..9899+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8741 ID=mRNA_8741|Name=jgi.p|Nanoce1779_2|603829|organism=Nannochloropsis oceanica|type=mRNA|length=927bp|location=Sequence derived from alignment at scaffold_28:8973..9899+ (Nannochloropsis oceanica)
CCCCCCATCTGCCAACCCCGTAGCTGCCGCCATTCTCACACCTAAATCCC
CCGGTCCTTGGGGTTCATAGATCCAGTCTAAGCCCAACCATGCCTTCATC
TTGCTCTCTCCATCCTCCCCTGCGAGAGCATCGTCATACCGGATCCGACA
GTCCACAACTTTCCGTTCGCTGATGCTGCTGCTACTACTACTTCTGCTAC
TGCTGCCCTTTCGAAAAGTATCCAACGTCTGTAACGCCTGTCGGACCAAC
TGTCGATGAAGCCTCGCCGCTCCCTCTTTCCCCAAGGCAGGGATCATTCT
CGTCTTGGCACGCCCAGGCACAGGGTACTTGGTGAAAAGGTACACACGCG
GTGCCAAGCCCGATGATAACCCTCTTGATTGAGACGCGCGAGTGGGTGGG
TTGAACGTGTTGTCGTTAGGCACAGCGTCGTTGTTGTTGTTGCTATTACC
CTCGCCCCACCAGACAGGTTGTGTGGGAGGGGGTGGGGGAGGGTTACCGT
GGTCGAGCATGGGGTTAATGATGTTGAAAGCTGCTGTCGCGGCCGTGGCG
GATGAAAAGAAAGAGGCAGAGGTCAAGGATGAGAAGTGGGGTTGTTGTTG
GTCGTGATGGTGAGGGCAGGGAGATGTGAGATTGGTGCTGCCAGAAGAAG
GACGGTGCAGCACCTTCTGCTGCTGCTGCTGCTGCTGCCGTCTTGGCCAG
GGTTCCAACCAACCACTCTTTCTTCTCGCCCAGGCCGACTTGGACAGGAG
CAGGACAAGGAGGAAGGGTGCTACCGGGGCTGCGGGGGAACGCATTTCGG
CGCAGTGCGTGTCTACTTGATGTTGAGGCGGCTTGGCAACCGACACGACT
CGCGAACGAGCAGAGAAGCGGAGCCTGCCTTGATGGTGTGGTTGCGATAG
GAAATGTGCCGCGGCTGTGATGTGCTG
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Coding sequence (CDS) from alignment at scaffold_28:8973..9899+

>mRNA_8741 ID=mRNA_8741|Name=jgi.p|Nanoce1779_2|603829|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_28:8973..9899+ (Nannochloropsis oceanica)
ATGGTGAGGGCAGGGAGATGTGAGATTGGTGCTGCCAGAAGAAGGACGGT
GCAGCACCTTCTGCTGCTGCTGCTGCTGCTGCCGTCTTGGCCAGGGTTCC
AACCAACCACTCTTTCTTCTCGCCCAGGCCGACTTGGACAGGAGCAGGAC
AAGGAGGAAGGGTGCTACCGGGGCTGCGGGGGAACGCATTTCGGCGCAGT
GCGTGTCTACTTGATGTTGAGGCGGCTTGGCAACCGACACGACTCGCGAA
CGAGCAGAGAAGCGGAGCCTGCCTTGATGGTGTGGTTGCGATAG
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Synonyms
Publications