jgi.p|Nanoce1779_2|559909, mRNA_8740 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559909
Unique NamemRNA_8740
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1099
Alignment locationscaffold_28:7214..8384 -

Link to JBrowse

Properties
Property NameValue
TranscriptId559995
TrackFilteredModels2
ProteinId559909
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:7214..8384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559909gene_8740Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559909mRNA_8740-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8740CDS_8740Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8740 ID=mRNA_8740|Name=jgi.p|Nanoce1779_2|559909|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp
ATGGCCAGCAACGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTT
TTCCTCCTCCTCCTCCCCACCGCCCAACCCCCTCCCTCCCTCCCTTCCCA
CCACTCCAACGCCCAAACATGTAAGGAAAAACGGCCTCAAAATCCACGAT
CCAAATCTCGAAGTCATTGTCGTGGACGGCGGCTCCACTGACGGCACCCA
ACGTCTCGCGCTAGCCCTCGGTGCCCGCCTTGTCCAATCCCCTCTCGCCA
ACCGCGCCGCTCAATTGAATCTCGGTGCCGCAGAAGCAGCAGGCGACATC
CTCCTCTTCCTTCACGGCGACACCCTCCTTCCCCCCACCTGGGAAGACGA
TGTTCGAGGGGCCTTTGCCGGCGACCCCACCATCCTTGCCACTGCCTTCA
AGCTTAAAATTATGGGCCGACGCCCCTTCTACCGTGTCATCGAAGCGAGC
ATCACTGCGCGTAGCTCCTGGCCCTGGTCCATGCCCTACGGCGATCAGGC
CTTGGCTGTCCGGAGGAAGGTATTTGATGTATTGGGAGGCTTCCCTGACG
TGCCAATCATGGAAGACTACTCCTTCGTCCAAGCATTGCGGGGGAGGGGA
GATGGAGGGATGTACGGGGGCAGAATCGAGTTGTTGCCGAGTTGTGTGCG
GACGTCAGGGAGGAGGTGGGAGAGGGTGGGGGTACTCCGGACGACGCTCA
TCAACCAGTGCGTAATTCTGGGGTGGCATTTAAAGGTGGAACCGGACCGT
CTAGCTGTCTTCTATCGACAGGCGAAACATGGAGGAGGGAGGGAGGGAGG
GAGGTGGTGGGAGAGGAAGGGGGAGCCAATGACATTTGTGAGGGCGAGGG
GCGTGAAGGAAGGGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGGG
GAGGAAGAGGAGCGGAGAAGGATGGAGGAGAAGGCGTTCGCGGCTGTGTT
GCCGTTGGTAGGTGGATTTTGAATAAAGAGAGGGAGAGAGGAAGAGGGGG
TATAGAAGCAAGAGGAGGAGGAGGAGGAGGAGGGGGAAGAGGAGCATTTG
AAAAAGAAAGATGTCGAGTAATGTTCGTTTGTGAATATAATTGATTAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|559909

>mRNA_8740-protein ID=mRNA_8740-protein|Name=jgi.p|Nanoce1779_2|559909|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MASNASSSSSSSSSSSFSSSSSPPPNPLPPSLPTTPTPKHVRKNGLKIHD
PNLEVIVVDGGSTDGTQRLALALGARLVQSPLANRAAQLNLGAAEAAGDI
LLFLHGDTLLPPTWEDDVRGAFAGDPTILATAFKLKIMGRRPFYRVIEAS
ITARSSWPWSMPYGDQALAVRRKVFDVLGGFPDVPIMEDYSFVQALRGRG
DGGMYGGRIELLPSCVRTSGRRWERVGVLRTTLINQCVILGWHLKVEPDR
LAVFYRQAKHGGGREGGRWWERKGEPMTFVRARGVKEGEEEEEEEEEEEG
EEEERRRMEEKAFAAVLPLVGGF*
back to top

mRNA from alignment at scaffold_28:7214..8384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8740 ID=mRNA_8740|Name=jgi.p|Nanoce1779_2|559909|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp|location=Sequence derived from alignment at scaffold_28:7214..8384- (Nannochloropsis oceanica)
ATGGCCAGCAACGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTT TTCCTCCTCCTCCTCCCCACCGCCCAACCCCCTCCCTCCCTCCCTTCCCA CCACTCCAACGCCCAAACATGTAAGGAAAAACGGCCTCAAAATCCACGAT CCAAATCTCGAAGTCATTGTCGTGGACGGCGGCTCCACTGACGGCACCCA ACGTCTCGCGCTAGCCCTCGGTGCCCGCCTTGTCCAATCCCCTCTCGCCA ACCGCGCCGCTCAATTGAATCTCGGTGCCGCAGAAGCAGCAGGCGACATC CTCCTCTTCCTTCACGGCGACACCCTCCTTCCCCCCACCTGGGAAGACGA TGTTCGAGGGGCCTTTGCCGGCGACCCCACCATCCTTGCCACTGCCTTCA AGCTTAAAATTATGGGCCGACGCCCCTTCTACCGTGTCATCGAAGCGAGC ATCACTGCGCGTAGCTCCTGGCCCTGGTCCATGCCCTACGGCGATCAGGC CTTGGCTGTCCGGAGGAAGGTATTTGATGTATTGGGAGGCTTCCCTGACG TGCCAATCATGGAAGACTACTCCTTCGTCCAAGCATTGCGGGTGCTGGCC AAGAGGCCGCCCCCTCCCAAGCCGAGGAGTCGGAGGAAGGGGGGGAAGAA GGGAGGGAGGGAGGGGAGGGGAGATGGAGGGATGTACGGGGGCAGAATCG AGTTGTTGCCGAGTTGTGTGCGGACGTCAGGGAGGAGGTGGGAGAGGGTG GGGGTACTCCGGACGACGCTCATCAACCAGTGCGTAATTCTGGGGTGGCA TTTAAAGGTGGAACCGGACCGTCTAGCTGTCTTCTATCGACAGGCGAAAC ATGGAGGAGGGAGGGAGGGAGGGAGGTGGTGGGAGAGGAAGGGGGAGCCA ATGACATTTGTGAGGGCGAGGGGCGTGAAGGAAGGGGAGGAAGAAGAGGA GGAGGAAGAGGAGGAGGAGGGGGAGGAAGAGGAGCGGAGAAGGATGGAGG AGAAGGCGTTCGCGGCTGTGTTGCCGTTGGTAGGTGGATTTTGAATAAAG AGAGGGAGAGAGGAAGAGGGGGTATAGAAGCAAGAGGAGGAGGAGGAGGA GGAGGGGGAAGAGGAGCATTTGAAAAAGAAAGATGTCGAGTAATGTTCGT TTGTGAATATAATTGATTAGG
back to top

Coding sequence (CDS) from alignment at scaffold_28:7214..8384-

>mRNA_8740 ID=mRNA_8740|Name=jgi.p|Nanoce1779_2|559909|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_28:7214..8384- (Nannochloropsis oceanica)
GGGAGGGGAGATGGAGGGATGTACGGGGGCAGAATCGAGTTGTTGCCGAG
TTGTGTGCGGACGTCAGGGAGGAGGTGGGAGAGGGTGGGGGTACTCCGGA
CGACGCTCATCAACCAGTGCGTAATTCTGGGGTGGCATTTAAAGGTGGAA
CCGGACCGTCTAGCTGTCTTCTATCGACAGGCGAAACATGGAGGAGGGAG
GGAGGGAGGGAGGTGGTGGGAGAGGAAGGGGGAGCCAATGACATTTGTGA
GGGCGAGGGGCGTGAAGGAAGGGGAGGAAGAAGAGGAGGAGGAAGAGGAG
GAGGAGGGGGAGGAAGAGGAGCGGAGAAGGATGGAGGAGAAGGCGTTCGC
GGCTGTGTTGCCGTTGGTAGGTGGATTTTGAATGGCCAGCAACGCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCTTCCTTTTCCTCCTCCTCCTCCCCA
CCGCCCAACCCCCTCCCTCCCTCCCTTCCCACCACTCCAACGCCCAAACA
TGTAAGGAAAAACGGCCTCAAAATCCACGATCCAAATCTCGAAGTCATTG
TCGTGGACGGCGGCTCCACTGACGGCACCCAACGTCTCGCGCTAGCCCTC
GGTGCCCGCCTTGTCCAATCCCCTCTCGCCAACCGCGCCGCTCAATTGAA
TCTCGGTGCCGCAGAAGCAGCAGGCGACATCCTCCTCTTCCTTCACGGCG
ACACCCTCCTTCCCCCCACCTGGGAAGACGATGTTCGAGGGGCCTTTGCC
GGCGACCCCACCATCCTTGCCACTGCCTTCAAGCTTAAAATTATGGGCCG
ACGCCCCTTCTACCGTGTCATCGAAGCGAGCATCACTGCGCGTAGCTCCT
GGCCCTGGTCCATGCCCTACGGCGATCAGGCCTTGGCTGTCCGGAGGAAG
GTATTTGATGTATTGGGAGGCTTCCCTGACGTGCCAATCATGGAAGACTA
CTCCTTCGTCCAAGCATTGCGGGGGAGGGGAGATGGAGGGATGTACGGGG
GCAGAATCGAGTTGTTGCCGAGTTGTGTGCGGACGTCAGGGAGGAGGTGG
GAGAGGGTGGGGGTACTCCGGACGACGCTCATCAACCAGTGCGTAATTCT
GGGGTGGCATTTAAAGGTGGAACCGGACCGTCTAGCTGTCTTCTATCGAC
AGGCGAAACATGGAGGAGGGAGGGAGGGAGGGAGGTGGTGGGAGAGGAAG
GGGGAGCCAATGACATTTGTGAGGGCGAGGGGCGTGAAGGAAGGGGAGGA
AGAAGAGGAGGAGGAAGAGGAGGAGGAGGGGGAGGAAGAGGAGCGGAGAA
GGATGGAGGAGAAGGCGTTCGCGGCTGTGTTGCCGTTGGTAGGTGGATTT
TGAATGGCCAGCAACGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTC
CTTTTCCTCCTCCTCCTCCCCACCGCCCAACCCCCTCCCTCCCTCCCTTC
CCACCACTCCAACGCCCAAACATGTAAGGAAAAACGGCCTCAAAATCCAC
GATCCAAATCTCGAAGTCATTGTCGTGGACGGCGGCTCCACTGACGGCAC
CCAACGTCTCGCGCTAGCCCTCGGTGCCCGCCTTGTCCAATCCCCTCTCG
CCAACCGCGCCGCTCAATTGAATCTCGGTGCCGCAGAAGCAGCAGGCGAC
ATCCTCCTCTTCCTTCACGGCGACACCCTCCTTCCCCCCACCTGGGAAGA
CGATGTTCGAGGGGCCTTTGCCGGCGACCCCACCATCCTTGCCACTGCCT
TCAAGCTTAAAATTATGGGCCGACGCCCCTTCTACCGTGTCATCGAAGCG
AGCATCACTGCGCGTAGCTCCTGGCCCTGGTCCATGCCCTACGGCGATCA
GGCCTTGGCTGTCCGGAGGAAGGTATTTGATGTATTGGGAGGCTTCCCTG
ACGTGCCAATCATGGAAGACTACTCCTTCGTCCAAGCATTGCGG
back to top
Synonyms
Publications