jgi.p|Nanoce1779_2|673659, mRNA_8738 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673659
Unique Name	mRNA_8738
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2005
Alignment location	scaffold_28:203..2207 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673745
Track	FilteredModels2
ProteinId	673659

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_28	supercontig	scaffold_28:203..2207 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673659	gene_8738	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8738	CDS_8738	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673659	mRNA_8738-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_28:203..2207-
coding sequence from alignment at scaffold_28:203..2207-

mRNA sequence

>mRNA_8738 ID=mRNA_8738|Name=jgi.p|Nanoce1779_2|673659|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp
GCAGAAGTAGCCACGAGGAGATGCCAACACACTCGGTGGCGCACTACATC
TGAATCTTTCGGTGCACGCCTATATTTCTGTGTATGGTCCAGTCCTTGTT
CGATGGACAAGGCCCCTGGGTGGCATTTGCTAATAATTTGCCTGCGACAC
TGCTTGTGCTCCTTGGATTGACCTCTCACCTCCCCTCACCCTTCCTCCAC
ATCTCACCGTACAGGGTTTATCATCCCTGTCTGCCCTTTCTGCACAAGCG
TACATGCGCCCGTTCTTTTCGCCCTCCTCCCAACCTCCTTCTTCACGCGC
TCCACCCTCCTCCCTCTCTTCCTTCTTTCATCGACCCCTCTCGGAGCCTC
ACACCATAGGGAATGCCTGGGAAACCTCTACCTCCGTGACAACTACGCCC
TTCTCCTTCTCCTCCTTTCCCTCCTCCTCTTCGTGCAGCTGCAAAAAAAG
CAACTGTCTCAAATTATATTGCGAGTGCTTCTCAAACGGTGTCTACTGCA
ATGGAGGGCAGCAGGGCCAGCAGGGCGGGGGGCAGGAAGGAGGACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGAGAAGGCCGGTGTAA
ATGTGAAGGTTGTTTCAACAACCTGGCGAATGAAAAGACGAGGCGAGAAG
CGATTGAATCGGCTCTAAGTCGGAATCCGCATGCGTTTAGATCCAAAATC
TTACACGCCGGAACGACGAAGGAGGAGACTGGATGTGACGGAGGAGGAGG
GGGAGAACGGGGAGGAGAAGGAGGAATTGTGGCTATAAAGCACCAAAAAG
GTTGCCATTGCAAAAGATCGCACTGCCTTAAAAAATACTGTGAATGCTTT
CAGGCGGGTATTCTGTGTGTGGAGAGGAAGTGCCGATGTTTGGACTGTTG
GAACTACGGTGGGTCCGAGGCCTTGATCAAGGCGAGGGCGGGAAGGAGGA
AGGAGCCTACAGCACCTGTCGCTGCTCCCCTTGCTGCCCGTGTTGGTGGA
GATGGGGATAGTAGACTTGTGGAAGGGAAGTTGGGAGAGGAAGGAGAAGT
TACTTACCAAGGCGATTTAAGTGCTGGGGGAGGAGGGGGAAGGGGAGGAA
GCGAGGGAGGGAATGCACCAGCAAAGCGTAAATGTATTGATTCTCAAACA
GGTTGGAGAAGGAATGAGGGGGAAAGGGTAAAGAGGGCAGTGAGGATGCA
ATCAAAGAATGTGCTGGATGTGATGAAGCCCCAGATGGTTGATGATGTGG
TTCGATTGTTGGTGCAGTCTGCATGGGAGGTAGGGGAGAAGGAGGAGGAG
CAGCAGCTGCTGCAGGAGGAAGTGCGACGACGACGATGGCGACGAGAAGG
CAATGAGCAGCGGAGAGAAGGAGAGGAGGAGGGAGGAGAAGGCGTGTCTA
TCTCGCAATCGTCCTCAGCAGCCGCAGCAGCAAGAGCAGCAGCACTCGCT
GCAGAGACAGCAGCTAGCAAGAAAGAAGCGACAGTGGGAAAGGAAGGTAA
AGAGAAGAAGAATGAGTTGATGGAGCTGGATAGGGAGGACGAAGACGACT
TATGCTGTAATGAAGAGGCACTAGATGTCTTCGAAGGGCTGGATGGCTTG
ATGGAGGGCGAGAAGGATGGGGAGGAGGCGAGGGACGAAGGGCGGGTCGG
CACTGCGGCTGCGCTAGCAGCAGAGGCCTCACTGGGAAGTTCTGCTGGGC
AAGAAGATGGTAGTTACCTTTCACCAACGAAAGGTGCAACAATAGCATCA
ACAGCAGCTCAATCACAGCCTCCCTTTTATTTTCCTTCCTCTTCTCGGGT
CCGACGGCATCGGCAAGAAATCGCTGTACTCCAACATTTGAATGCGGCCT
TGCTTAGAATGTACAACATGGTTGATCGTGCCAAAGTGATCGGCGGCGGT
GGCGGGGGAGGAGGAGGTGGAGGAGGTGGAGGAGGAGGAGGGGGAGGAGG
AGGAGAGGGAGGAGGGCGGGGTTTTCTTTTCCTCTTTATTATTAGTTTGT
TTTGA

protein sequence of jgi.p|Nanoce1779_2|673659

>mRNA_8738-protein ID=mRNA_8738-protein|Name=jgi.p|Nanoce1779_2|673659|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MRPFFSPSSQPPSSRAPPSSLSSFFHRPLSEPHTIGNAWETSTSVTTTPF
SFSSFPSSSSCSCKKSNCLKLYCECFSNGVYCNGGQQGQQGGGQEGGQQQ
QQQQQQQQQQREGRCKCEGCFNNLANEKTRREAIESALSRNPHAFRSKIL
HAGTTKEETGCDGGGGGERGGEGGIVAIKHQKGCHCKRSHCLKKYCECFQ
AGILCVERKCRCLDCWNYGGSEALIKARAGRRKEPTAPVAAPLAARVGGD
GDSRLVEGKLGEEGEVTYQGDLSAGGGGGRGGSEGGNAPAKRKCIDSQTG
WRRNEGERVKRAVRMQSKNVLDVMKPQMVDDVVRLLVQSAWEVGEKEEEQ
QLLQEEVRRRRWRREGNEQRREGEEEGGEGVSISQSSSAAAAARAAALAA
ETAASKKEATVGKEGKEKKNELMELDREDEDDLCCNEEALDVFEGLDGLM
EGEKDGEEARDEGRVGTAAALAAEASLGSSAGQEDGSYLSPTKGATIAST
AAQSQPPFYFPSSSRVRRHRQEIAVLQHLNAALLRMYNMVDRAKVIGGGG
GGGGGGGGGGGGGGGGGEGGGRGFLFLFIISLF*

mRNA from alignment at scaffold_28:203..2207-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8738 ID=mRNA_8738|Name=jgi.p|Nanoce1779_2|673659|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp|location=Sequence derived from alignment at scaffold_28:203..2207- (Nannochloropsis oceanica)
GCAGAAGTAGCCACGAGGAGATGCCAACACACTCGGTGGCGCACTACATC
TGAATCTTTCGGTGCACGCCTATATTTCTGTGTATGGTCCAGTCCTTGTT
CGATGGACAAGGCCCCTGGGTGGCATTTGCTAATAATTTGCCTGCGACAC
TGCTTGTGCTCCTTGGATTGACCTCTCACCTCCCCTCACCCTTCCTCCAC
ATCTCACCGTACAGGGTTTATCATCCCTGTCTGCCCTTTCTGCACAAGCG
TACATGCGCCCGTTCTTTTCGCCCTCCTCCCAACCTCCTTCTTCACGCGC
TCCACCCTCCTCCCTCTCTTCCTTCTTTCATCGACCCCTCTCGGAGCCTC
ACACCATAGGGAATGCCTGGGAAACCTCTACCTCCGTGACAACTACGCCC
TTCTCCTTCTCCTCCTTTCCCTCCTCCTCTTCGTGCAGCTGCAAAAAAAG
CAACTGTCTCAAATTATATTGCGAGTGCTTCTCAAACGGTGTCTACTGCA
ATGGAGGGCAGCAGGGCCAGCAGGGCGGGGGGCAGGAAGGAGGACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGAGAAGGCCGGTGTAA
ATGTGAAGGTTGTTTCAACAACCTGGCGAATGAAAAGACGAGGCGAGAAG
CGATTGAATCGGCTCTAAGTCGGAATCCGCATGCGTTTAGATCCAAAATC
TTACACGCCGGAACGACGAAGGAGGAGACTGGATGTGACGGAGGAGGAGG
GGGAGAACGGGGAGGAGAAGGAGGAATTGTGGCTATAAAGCACCAAAAAG
GTTGCCATTGCAAAAGATCGCACTGCCTTAAAAAATACTGTGAATGCTTT
CAGGCGGGTATTCTGTGTGTGGAGAGGAAGTGCCGATGTTTGGACTGTTG
GAACTACGGTGGGTCCGAGGCCTTGATCAAGGCGAGGGCGGGAAGGAGGA
AGGAGCCTACAGCACCTGTCGCTGCTCCCCTTGCTGCCCGTGTTGGTGGA
GATGGGGATAGTAGACTTGTGGAAGGGAAGTTGGGAGAGGAAGGAGAAGT
TACTTACCAAGGCGATTTAAGTGCTGGGGGAGGAGGGGGAAGGGGAGGAA
GCGAGGGAGGGAATGCACCAGCAAAGCGTAAATGTATTGATTCTCAAACA
GGTTGGAGAAGGAATGAGGGGGAAAGGGTAAAGAGGGCAGTGAGGATGCA
ATCAAAGAATGTGCTGGATGTGATGAAGCCCCAGATGGTTGATGATGTGG
TTCGATTGTTGGTGCAGTCTGCATGGGAGGTAGGGGAGAAGGAGGAGGAG
CAGCAGCTGCTGCAGGAGGAAGTGCGACGACGACGATGGCGACGAGAAGG
CAATGAGCAGCGGAGAGAAGGAGAGGAGGAGGGAGGAGAAGGCGTGTCTA
TCTCGCAATCGTCCTCAGCAGCCGCAGCAGCAAGAGCAGCAGCACTCGCT
GCAGAGACAGCAGCTAGCAAGAAAGAAGCGACAGTGGGAAAGGAAGGTAA
AGAGAAGAAGAATGAGTTGATGGAGCTGGATAGGGAGGACGAAGACGACT
TATGCTGTAATGAAGAGGCACTAGATGTCTTCGAAGGGCTGGATGGCTTG
ATGGAGGGCGAGAAGGATGGGGAGGAGGCGAGGGACGAAGGGCGGGTCGG
CACTGCGGCTGCGCTAGCAGCAGAGGCCTCACTGGGAAGTTCTGCTGGGC
AAGAAGATGGTAGTTACCTTTCACCAACGAAAGGTGCAACAATAGCATCA
ACAGCAGCTCAATCACAGCCTCCCTTTTATTTTCCTTCCTCTTCTCGGGT
CCGACGGCATCGGCAAGAAATCGCTGTACTCCAACATTTGAATGCGGCCT
TGCTTAGAATGTACAACATGGTTGATCGTGCCAAAGTGATCGGCGGCGGT
GGCGGGGGAGGAGGAGGTGGAGGAGGTGGAGGAGGAGGAGGGGGAGGAGG
AGGAGAGGGAGGAGGGCGGGGTTTTCTTTTCCTCTTTATTATTAGTTTGT
TTTGA

Coding sequence (CDS) from alignment at scaffold_28:203..2207-

>mRNA_8738 ID=mRNA_8738|Name=jgi.p|Nanoce1779_2|673659|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_28:203..2207- (Nannochloropsis oceanica)
ATGCGCCCGTTCTTTTCGCCCTCCTCCCAACCTCCTTCTTCACGCGCTCC
ACCCTCCTCCCTCTCTTCCTTCTTTCATCGACCCCTCTCGGAGCCTCACA
CCATAGGGAATGCCTGGGAAACCTCTACCTCCGTGACAACTACGCCCTTC
TCCTTCTCCTCCTTTCCCTCCTCCTCTTCGTGCAGCTGCAAAAAAAGCAA
CTGTCTCAAATTATATTGCGAGTGCTTCTCAAACGGTGTCTACTGCAATG
GAGGGCAGCAGGGCCAGCAGGGCGGGGGGCAGGAAGGAGGACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGAGAAGGCCGGTGTAAATG
TGAAGGTTGTTTCAACAACCTGGCGAATGAAAAGACGAGGCGAGAAGCGA
TTGAATCGGCTCTAAGTCGGAATCCGCATGCGTTTAGATCCAAAATCTTA
CACGCCGGAACGACGAAGGAGGAGACTGGATGTGACGGAGGAGGAGGGGG
AGAACGGGGAGGAGAAGGAGGAATTGTGGCTATAAAGCACCAAAAAGGTT
GCCATTGCAAAAGATCGCACTGCCTTAAAAAATACTGTGAATGCTTTCAG
GCGGGTATTCTGTGTGTGGAGAGGAAGTGCCGATGTTTGGACTGTTGGAA
CTACGGTGGGTCCGAGGCCTTGATCAAGGCGAGGGCGGGAAGGAGGAAGG
AGCCTACAGCACCTGTCGCTGCTCCCCTTGCTGCCCGTGTTGGTGGAGAT
GGGGATAGTAGACTTGTGGAAGGGAAGTTGGGAGAGGAAGGAGAAGTTAC
TTACCAAGGCGATTTAAGTGCTGGGGGAGGAGGGGGAAGGGGAGGAAGCG
AGGGAGGGAATGCACCAGCAAAGCGTAAATGTATTGATTCTCAAACAGGT
TGGAGAAGGAATGAGGGGGAAAGGGTAAAGAGGGCAGTGAGGATGCAATC
AAAGAATGTGCTGGATGTGATGAAGCCCCAGATGGTTGATGATGTGGTTC
GATTGTTGGTGCAGTCTGCATGGGAGGTAGGGGAGAAGGAGGAGGAGCAG
CAGCTGCTGCAGGAGGAAGTGCGACGACGACGATGGCGACGAGAAGGCAA
TGAGCAGCGGAGAGAAGGAGAGGAGGAGGGAGGAGAAGGCGTGTCTATCT
CGCAATCGTCCTCAGCAGCCGCAGCAGCAAGAGCAGCAGCACTCGCTGCA
GAGACAGCAGCTAGCAAGAAAGAAGCGACAGTGGGAAAGGAAGGTAAAGA
GAAGAAGAATGAGTTGATGGAGCTGGATAGGGAGGACGAAGACGACTTAT
GCTGTAATGAAGAGGCACTAGATGTCTTCGAAGGGCTGGATGGCTTGATG
GAGGGCGAGAAGGATGGGGAGGAGGCGAGGGACGAAGGGCGGGTCGGCAC
TGCGGCTGCGCTAGCAGCAGAGGCCTCACTGGGAAGTTCTGCTGGGCAAG
AAGATGGTAGTTACCTTTCACCAACGAAAGGTGCAACAATAGCATCAACA
GCAGCTCAATCACAGCCTCCCTTTTATTTTCCTTCCTCTTCTCGGGTCCG
ACGGCATCGGCAAGAAATCGCTGTACTCCAACATTTGAATGCGGCCTTGC
TTAGAATGTACAACATGGTTGATCGTGCCAAAGTGATCGGCGGCGGTGGC
GGGGGAGGAGGAGGTGGAGGAGGTGGAGGAGGAGGAGGGGGAGGAGGAGG
AGAGGGAGGAGGGCGGGGTTTTCTTTTCCTCTTTATTATTAGTTTGTTTT
GA

Synonyms

Publications