jgi.p|Nanoce1779_2|603808, mRNA_8734 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603808
Unique NamemRNA_8734
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length605
Alignment locationscaffold_27:300886..302368 -

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Properties
Property NameValue
TranscriptId603894
TrackFilteredModels2
ProteinId603808
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:300886..302368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603808gene_8734Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603808mRNA_8734-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8734CDS_8734Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8734 ID=mRNA_8734|Name=jgi.p|Nanoce1779_2|603808|organism=Nannochloropsis oceanica|type=mRNA|length=605bp
CAGGCCAGGCCAGCATCATGGCCATCACATTGGTGGACGAGATGCATGCC
CATCCGTGGGAGAGGTACAGTGCTTTTCTTGGCCGCTTCCTCCCTTTTCT
CGTCTTTGGCATCTCCATCCTAGGCTTCATCCTACACAAGTCCATCGGCA
CGCAGCTCGCCATGTTCTTCATCTCCTTCTTCATCGCCCTCCTAGAGGCC
CCGTGGGTGTACGCGCTCTTTCCGCCTTGCTACCGCGTCCGGGACAAGCT
CATCGAAGACCTGGGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATG
CGGCCTTTTCCATCATTGCTTACCTGCCTCGACCAACCATCGCCATCCTG
TCCGGCCTCCTCCTAGACCTGGCCGCCGTCCTCTACACCTGCTCCTCCCT
CTTCGCCGACGAAACCATCGGGGAGGAGAACAAATTTGAGCAAGCGATGC
CACAGCCGTCCTCTACCTACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCC
TCTTTCGGCACGTTCTGAGGGAGGGAGGGAGGGTGGGAGGGAGGGGGCCA
GGTATTTATGTACATATCTATGTGGGAAGCAGGAGGGAGTGAGTGAGGGT
GGGAG
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protein sequence of jgi.p|Nanoce1779_2|603808

>mRNA_8734-protein ID=mRNA_8734-protein|Name=jgi.p|Nanoce1779_2|603808|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MAITLVDEMHAHPWERYSAFLGRFLPFLVFGISILGFILHKSIGTQLAMF
FISFFIALLEAPWVYALFPPCYRVRDKLIEDLGFSKGWVRGVTYAAFSII
AYLPRPTIAILSGLLLDLAAVLYTCSSLFADETIGEENKFEQAMPQPSST
YQPPPPPPPSASFGTF*
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mRNA from alignment at scaffold_27:300886..302368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8734 ID=mRNA_8734|Name=jgi.p|Nanoce1779_2|603808|organism=Nannochloropsis oceanica|type=mRNA|length=1483bp|location=Sequence derived from alignment at scaffold_27:300886..302368- (Nannochloropsis oceanica)
CAGGCCAGGCCAGCATCATGGCCATCACATTGGTGGACGAGATGCATGCC
CATCCGTGGGAGAGGTACGTCATTGGGCATTTTTTCGTTTCTATTTGCGT
CAATTTTCCGGGTTTTTCAGAAGAGGGAGAGCGCACCAACCCGCTTACCA
CCCCCCACTCGCTCCACTCGACAAACCCCTTCCTCCTTCCCTCCCTCCGT
TTCTTCGTGCTAACACACAACAGGTACAGTGCTTTTCTTGGCCGCTTCCT
CCCTTTTCTCGTCTTTGGCATCTCCATCCTAGGCTTCATCCTACACAAGT
CCATCGGTACGTGTTTTTCCCTCCTTCCTCTTTCCCTTCTTACCTCCATC
CTTCACTCTGCTCTACCGCTGCTCATCCTGTCTCCTTCCCTCCCTTCCCC
CCTCCCTCAGGCACGCAGCTCGCCATGTTCTTCATCTCCTTCTTCATCGC
CCTCCTAGAGGCCCCGTGGGTGTACGCGCTCTTTCCGCCTTGCTACCGCG
TCCGGGACAAGTAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGATGGGG
GGGGAGAAGGAAGAAATGAAAAATTGCTTGCGGGCCAATGAGGGAGTCAC
ATGTATTTACATACTATCGATTGGCTAGAGCCAGCTGGGAAGGGGGTTTA
CGGTTGGTCGCCTTTCGGAAGGCATGGACGGACGGGTGGTCAGTGGCATC
CACTCATCCACCCACCCCTCCTTCCATCCTCTCCTTCCTCCTTCCTCCTT
CCTCCTTCCTCCTCTGATGGTATCCCCCGTATTCTCTCTCCCCCTCTCCC
TCCCCTCTTCAGGCTCATCGAAGACCTGGGGTTCAGCAAGGGCTGGGTGC
GCGGCGTCACGTATGCGGCCTTTTCCATCATTGCTTACCTGCCTCGACCA
AGTAGGGAGGGAGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
AACGAAGTAGAGTTATTGGCGCGTCAGCTTCTATCCTTGTCAGCACCTTG
AAGTGGCCCTTCTGATCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAC
CTAACCCTACCCCTTCCAGCCATCGCCATCCTGTCCGGCCTCCTCCTAGA
CCTGGCCGCCGTCCTCTACACCTGCTCCTCCCTCTTCGCCGACGAAACCA
TCGGGTACGCCCCCTTCCTCCTCTGAACACCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTGACCGTGACAGCTCGCGGAGCCCACCAAGATCCTTCTCA
CAAACCCACCCCCGCCCTCCCTCCCTCCCTCCCTTCTTTCATTCCATAGG
GAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTACCTACCA
GCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCTGAGGGA
GGGAGGGAGGGTGGGAGGGAGGGGGCCAGGTATTTATGTACATATCTATG
TGGGAAGCAGGAGGGAGTGAGTGAGGGTGGGAG
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Coding sequence (CDS) from alignment at scaffold_27:300886..302368-

>mRNA_8734 ID=mRNA_8734|Name=jgi.p|Nanoce1779_2|603808|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_27:300886..302368- (Nannochloropsis oceanica)
GGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTACCTACC
AGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCTGACCA
TCGCCATCCTGTCCGGCCTCCTCCTAGACCTGGCCGCCGTCCTCTACACC
TGCTCCTCCCTCTTCGCCGACGAAACCATCGGGCTCATCGAAGACCTGGG
GTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCATCA
TTGCTTACCTGCCTCGACCAAGCACGCAGCTCGCCATGTTCTTCATCTCC
TTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCGCTCTTTCCGCC
TTGCTACCGCGTCCGGGACAAGTACAGTGCTTTTCTTGGCCGCTTCCTCC
CTTTTCTCGTCTTTGGCATCTCCATCCTAGGCTTCATCCTACACAAGTCC
ATCGATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAGA
GGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTACCTAC
CAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCTGACC
ATCGCCATCCTGTCCGGCCTCCTCCTAGACCTGGCCGCCGTCCTCTACAC
CTGCTCCTCCCTCTTCGCCGACGAAACCATCGGGCTCATCGAAGACCTGG
GGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCATC
ATTGCTTACCTGCCTCGACCAAGCACGCAGCTCGCCATGTTCTTCATCTC
CTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCGCTCTTTCCGC
CTTGCTACCGCGTCCGGGACAAGTACAGTGCTTTTCTTGGCCGCTTCCTC
CCTTTTCTCGTCTTTGGCATCTCCATCCTAGGCTTCATCCTACACAAGTC
CATCGATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGAG
AGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTACCTA
CCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCTGAC
CATCGCCATCCTGTCCGGCCTCCTCCTAGACCTGGCCGCCGTCCTCTACA
CCTGCTCCTCCCTCTTCGCCGACGAAACCATCGGGCTCATCGAAGACCTG
GGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCAT
CATTGCTTACCTGCCTCGACCAAGCACGCAGCTCGCCATGTTCTTCATCT
CCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCGCTCTTTCCG
CCTTGCTACCGCGTCCGGGACAAGTACAGTGCTTTTCTTGGCCGCTTCCT
CCCTTTTCTCGTCTTTGGCATCTCCATCCTAGGCTTCATCCTACACAAGT
CCATCGATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGGA
GAGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTACCT
ACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCTGA
CCATCGCCATCCTGTCCGGCCTCCTCCTAGACCTGGCCGCCGTCCTCTAC
ACCTGCTCCTCCCTCTTCGCCGACGAAACCATCGGGCTCATCGAAGACCT
GGGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCCA
TCATTGCTTACCTGCCTCGACCAAGCACGCAGCTCGCCATGTTCTTCATC
TCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCGCTCTTTCC
GCCTTGCTACCGCGTCCGGGACAAGTACAGTGCTTTTCTTGGCCGCTTCC
TCCCTTTTCTCGTCTTTGGCATCTCCATCCTAGGCTTCATCCTACACAAG
TCCATCGATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGGG
AGAGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTACC
TACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCTG
ACCATCGCCATCCTGTCCGGCCTCCTCCTAGACCTGGCCGCCGTCCTCTA
CACCTGCTCCTCCCTCTTCGCCGACGAAACCATCGGGCTCATCGAAGACC
TGGGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTCC
ATCATTGCTTACCTGCCTCGACCAAGCACGCAGCTCGCCATGTTCTTCAT
CTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCGCTCTTTC
CGCCTTGCTACCGCGTCCGGGACAAGTACAGTGCTTTTCTTGGCCGCTTC
CTCCCTTTTCTCGTCTTTGGCATCTCCATCCTAGGCTTCATCCTACACAA
GTCCATCGATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTGG
GAGAGGGAGGAGAACAAATTTGAGCAAGCGATGCCACAGCCGTCCTCTAC
CTACCAGCCCCCTCCCCCTCCCCCTCCCAGCGCCTCTTTCGGCACGTTCT
GACCATCGCCATCCTGTCCGGCCTCCTCCTAGACCTGGCCGCCGTCCTCT
ACACCTGCTCCTCCCTCTTCGCCGACGAAACCATCGGGCTCATCGAAGAC
CTGGGGTTCAGCAAGGGCTGGGTGCGCGGCGTCACGTATGCGGCCTTTTC
CATCATTGCTTACCTGCCTCGACCAAGCACGCAGCTCGCCATGTTCTTCA
TCTCCTTCTTCATCGCCCTCCTAGAGGCCCCGTGGGTGTACGCGCTCTTT
CCGCCTTGCTACCGCGTCCGGGACAAGTACAGTGCTTTTCTTGGCCGCTT
CCTCCCTTTTCTCGTCTTTGGCATCTCCATCCTAGGCTTCATCCTACACA
AGTCCATCGATGGCCATCACATTGGTGGACGAGATGCATGCCCATCCGTG
GGAGAG
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Synonyms
Publications