jgi.p|Nanoce1779_2|633116, mRNA_8733 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633116
Unique NamemRNA_8733
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length989
Alignment locationscaffold_27:299760..301015 +

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Properties
Property NameValue
TranscriptId633202
TrackFilteredModels2
ProteinId633116
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:299760..301015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633116gene_8733Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633116mRNA_8733-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8733CDS_8733Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8733 ID=mRNA_8733|Name=jgi.p|Nanoce1779_2|633116|organism=Nannochloropsis oceanica|type=mRNA|length=989bp
CCCTCCCCTCCTGGGATGCCGCCCTGCATCTCCGCAAGGCATTGGTCCGG
GAAGTGCAAGCTTCTCTGGATAAAGGGACGAAAAAAATACGCTTTGAGTG
CTGCCGCCGCCTCAAGCTCAAGCGCATGCCGGCGTTGGAGTTCCGCGTGG
ACCAGCTTGTGGAAGGCGCCCGGAAGGTCTCTCCCCTACTGGCGGGTAAA
CAGGGCTTGAGAATGCGGTAGGGAGGGTAGGGAGTGAGGGGGAGTCGAGG
GGAGGGGGCGTAGCCCCAGCAATTTATGTACATAAACATACGTACGTCTA
TATATATATATAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGACATA
CACACACATTGGCAGTAAGACACGAAAGTCGAGGCGCTGTTTGACTGCTG
CTGCTTGAGTGCTTGACTGCTGCTGCTTGACTGATGTTGTTATCGTGTCT
GCTGGAGAAGCCTCACGCCGACATCAGGCCTCGCCCGAGCAAGGAAGGGA
GGGGGGATGGGCCCCGAGGGGCGGTAGGATGGCAGGAGGGAGGAAGGCAC
AGGCAAAAGGCAGTGAGATCGCGAGGCTAGAGACCGAGGCAAAGGTATTG
AGATCGAGAGGCGATGAGATTAATAGCACGATGCAAAGGCCGAATCAAAA
GCAGAGGGAAGAGGCGAAAGGCAGAGTCATCAAAAGCAGCGGCAGTGGCA
TCAAGGACCAAAGCAGAGAGCAACAAAAACATGATCGAGGCCACGCCGAC
TCCTGCCCTCCGCGTCTCGTCGGATCTCGTGGCGGCGTCTCTTTCTTCCT
CGTTATTATTTACTCCGTGCGCTGGTTCTGACTAACCCTACTTTGACTTG
TTTCGATCCCTCCCACCCTCACTCACTCCCTCCTGCTTCCCACATAGATA
TGTACATAAATACCTGGCCCCCTCCCTCCCACCCTCCCTCCCTCCCTCAG
AACGTGCCGAAAGAGGCGCTGGGAGGGGGAGGGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|633116

>mRNA_8733-protein ID=mRNA_8733-protein|Name=jgi.p|Nanoce1779_2|633116|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MAGGRKAQAKGSEIARLETEAKVLRSRGDEINSTMQRPNQKQREEAKGRV
IKSSGSGIKDQSREQQKHDRGHADSCPPRLVGSRGGVSFFLVIIYSVRWF
*
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mRNA from alignment at scaffold_27:299760..301015+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8733 ID=mRNA_8733|Name=jgi.p|Nanoce1779_2|633116|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp|location=Sequence derived from alignment at scaffold_27:299760..301015+ (Nannochloropsis oceanica)
CCCTCCCCTCCTGGGATGCCGCCCTGCATCTCCGCAAGGCATTGGTCCGG
GAAGTGCAAGCTTCTCTGGATAAAGGGACGAAAAAAATACGCTTTGAGTG
CTGCCGCCGCCTCAAGCTCAAGGTACGGCGCATCCCTGCCCGTACTTCAT
GCCCTCCCCCTCTTCATTGCTCCCCCTTCGTCCTTTCTTTCTCCTCTCCC
TCCTCCCCTCCCTCCCTTCCTCCCTTAATCTCCCCACATGCCCGCGTCTT
GAAGCTCGTCGAATCGACATAACTCGTGTGTCCTCTTTTTCACTCCCTCC
CTCCCTCCCTCCTCTCCTCCTACCCTCCTTCCCTCTAACAGCGCATGCCG
GCGTTGGAGTTCCGCGTGGACCAGCTTGTGGAAGGCGCCCGGAAGGTCTC
TCCCCTACTGGCGGGGTTGGAGGAGGGAGGGGGGGAGGGAGGGAGGCCGG
GGGCGAGGGCGGGTAAACAGGGCTTGAGAATGCGGTAGGGAGGGTAGGGA
GTGAGGGGGAGTCGAGGGGAGGGGGCGTAGCCCCAGCAATTTATGTACAT
AAACATACGTACGTCTATATATATATATAGAGAGAGAGAGAAAGAGAGAG
AGAGAGAGAGAGACATACACACACATTGGCAGTAAGACACGAAAGTCGAG
GCGCTGTTTGACTGCTGCTGCTTGAGTGCTTGACTGCTGCTGCTTGACTG
ATGTTGTTATCGTGTCTGCTGGAGAAGCCTCACGCCGACATCAGGCCTCG
CCCGAGCAAGGAAGGGAGGGGGGATGGGCCCCGAGGGGCGGTAGGATGGC
AGGAGGGAGGAAGGCACAGGCAAAAGGCAGTGAGATCGCGAGGCTAGAGA
CCGAGGCAAAGGTATTGAGATCGAGAGGCGATGAGATTAATAGCACGATG
CAAAGGCCGAATCAAAAGCAGAGGGAAGAGGCGAAAGGCAGAGTCATCAA
AAGCAGCGGCAGTGGCATCAAGGACCAAAGCAGAGAGCAACAAAAACATG
ATCGAGGCCACGCCGACTCCTGCCCTCCGCGTCTCGTCGGATCTCGTGGC
GGCGTCTCTTTCTTCCTCGTTATTATTTACTCCGTGCGCTGGTTCTGACT
AACCCTACTTTGACTTGTTTCGATCCCTCCCACCCTCACTCACTCCCTCC
TGCTTCCCACATAGATATGTACATAAATACCTGGCCCCCTCCCTCCCACC
CTCCCTCCCTCCCTCAGAACGTGCCGAAAGAGGCGCTGGGAGGGGGAGGG
GGAGGG
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Coding sequence (CDS) from alignment at scaffold_27:299760..301015+

>mRNA_8733 ID=mRNA_8733|Name=jgi.p|Nanoce1779_2|633116|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_27:299760..301015+ (Nannochloropsis oceanica)
ATGGCAGGAGGGAGGAAGGCACAGGCAAAAGGCAGTGAGATCGCGAGGCT
AGAGACCGAGGCAAAGGTATTGAGATCGAGAGGCGATGAGATTAATAGCA
CGATGCAAAGGCCGAATCAAAAGCAGAGGGAAGAGGCGAAAGGCAGAGTC
ATCAAAAGCAGCGGCAGTGGCATCAAGGACCAAAGCAGAGAGCAACAAAA
ACATGATCGAGGCCACGCCGACTCCTGCCCTCCGCGTCTCGTCGGATCTC
GTGGCGGCGTCTCTTTCTTCCTCGTTATTATTTACTCCGTGCGCTGGTTC
TGA
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Synonyms
Publications