jgi.p|Nanoce1779_2|216838, mRNA_8732 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|216838
Unique NamemRNA_8732
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1154
Alignment locationscaffold_27:297964..299117 +

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Properties
Property NameValue
TranscriptId216924
TrackFilteredModels2
ProteinId216838
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:297964..299117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|216838gene_8732Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|216838mRNA_8732-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8732CDS_8732Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8732 ID=mRNA_8732|Name=jgi.p|Nanoce1779_2|216838|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
AGTTGAAGGGCAACGGGCCATCTTCAGGACGACGACTCGGAGATGACGGG
TTGCGGATAACCCCAGTCCTTGCGTGCCTTCCTGCCTACGCCTGCTCTCC
CTCTCTTGGTGTAAAAGCTTCACACACCACTACTGTTGTCCTTACTAAAT
CACGCCATTCCTACACACACCAACAGCATAGACTGCGGCAGCCCCACCAC
CAACCGGGCCAAGGCAAAACCTCCTCTATCCCATCGACAGGCAGGTAGCC
CGCCTCGCCCTCACCCCCCCTCCTTCATCCAATGCTACGTCGCTTACTGC
TTTCGGCGGCCCCAGTCAGCTCCAGAAGGAGAAGTGCCAAGACTCTTTCT
CCTGCAGGAGCAACAGCGGCAAGGGCGTCTGGGGCAGGGCGATTACCTTA
TTTATCTCCATCTCCCTTGTCCCCTCTGGTTGTGGTGCCTCGACGGGGAT
TGCGCTCGCGAGGTGGAAGAGGAGGGGCTGCAGGAGCAGGAGGATCGAAG
ACAACGGCATTCCCCGCTCCTTCGTCCCTCCGTCCAGATGTTCAGATGGA
AGACAAGAAGGAGGTGTCGGAGGAGGAGGAGGAAGGGAAGGAGGCTCTCC
CCTCGGCATCCAGGAATAGGACAAGCAAAGTGAAGCTGTCCCACGCGCGA
GAGCAATGGGAACAGCAACAACGAGAAGCCGCTTCCTCCTTCTCCTCTTC
GCTAGACGAGGATGAAGAGGAGGATGAGGAGGACGAGGAGGACGAGGGAT
GGATGGAGGAGTTGGACGAATGCATTGAGGACGAGGAGGAGGTGGAAATG
AACATGCTGGTCCGCTCCCTTCCGGTTGAGAGAGGGAGGGAGGCAGGAAT
GGTACGGAACCTCCCGATCGTCTGCCACAGGGCAGCGGGGACGAAGGAGT
GGGCTTTGTGCTTGGGGAGGGAGGGAGGGGGGAGGAGGAGGCGAGGAAGA
AGGCTGCCTTATGGGAGCTGGTGGACGACCGAGGGGTGCAGGAGGAGGAG
GATCGATGTAGGGAAAAAGGGAGAGAGGGAGGGAGGGGAATGAGGGAGTG
TGATGTATATATCGATGTGGCGTGTCTTTTGTCCTGTATATAAGCTACTT
TTGCGACTCACCCTTTCCTCCCTCCCTTCCTCCCTCCCTCCTTCCCTCCC
CCCC
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protein sequence of jgi.p|Nanoce1779_2|216838

>mRNA_8732-protein ID=mRNA_8732-protein|Name=jgi.p|Nanoce1779_2|216838|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MLRRLLLSAAPVSSRRRSAKTLSPAGATAARASGAGRLPYLSPSPLSPLV
VVPRRGLRSRGGRGGAAGAGGSKTTAFPAPSSLRPDVQMEDKKEVSEEEE
EGKEALPSASRNRTSKVKLSHAREQWEQQQREAASSFSSSLDEDEEEDEE
DEEDEGWMEELDECIEDEEEVEMNMLVRSLPVERGREAGMVRNLPIVCHR
AAGTKEWALCLGREGGGRRRRGRRLPYGSWWTTEGCRRRRIDVGKKGERE
GGE*
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mRNA from alignment at scaffold_27:297964..299117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8732 ID=mRNA_8732|Name=jgi.p|Nanoce1779_2|216838|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp|location=Sequence derived from alignment at scaffold_27:297964..299117+ (Nannochloropsis oceanica)
AGTTGAAGGGCAACGGGCCATCTTCAGGACGACGACTCGGAGATGACGGG
TTGCGGATAACCCCAGTCCTTGCGTGCCTTCCTGCCTACGCCTGCTCTCC
CTCTCTTGGTGTAAAAGCTTCACACACCACTACTGTTGTCCTTACTAAAT
CACGCCATTCCTACACACACCAACAGCATAGACTGCGGCAGCCCCACCAC
CAACCGGGCCAAGGCAAAACCTCCTCTATCCCATCGACAGGCAGGTAGCC
CGCCTCGCCCTCACCCCCCCTCCTTCATCCAATGCTACGTCGCTTACTGC
TTTCGGCGGCCCCAGTCAGCTCCAGAAGGAGAAGTGCCAAGACTCTTTCT
CCTGCAGGAGCAACAGCGGCAAGGGCGTCTGGGGCAGGGCGATTACCTTA
TTTATCTCCATCTCCCTTGTCCCCTCTGGTTGTGGTGCCTCGACGGGGAT
TGCGCTCGCGAGGTGGAAGAGGAGGGGCTGCAGGAGCAGGAGGATCGAAG
ACAACGGCATTCCCCGCTCCTTCGTCCCTCCGTCCAGATGTTCAGATGGA
AGACAAGAAGGAGGTGTCGGAGGAGGAGGAGGAAGGGAAGGAGGCTCTCC
CCTCGGCATCCAGGAATAGGACAAGCAAAGTGAAGCTGTCCCACGCGCGA
GAGCAATGGGAACAGCAACAACGAGAAGCCGCTTCCTCCTTCTCCTCTTC
GCTAGACGAGGATGAAGAGGAGGATGAGGAGGACGAGGAGGACGAGGGAT
GGATGGAGGAGTTGGACGAATGCATTGAGGACGAGGAGGAGGTGGAAATG
AACATGCTGGTCCGCTCCCTTCCGGTTGAGAGAGGGAGGGAGGCAGGAAT
GGTACGGAACCTCCCGATCGTCTGCCACAGGGCAGCGGGGACGAAGGAGT
GGGCTTTGTGCTTGGGGAGGGAGGGAGGGGGGAGGAGGAGGCGAGGAAGA
AGGCTGCCTTATGGGAGCTGGTGGACGACCGAGGGGTGCAGGAGGAGGAG
GATCGATGTAGGGAAAAAGGGAGAGAGGGAGGGAGGGGAATGAGGGAGTG
TGATGTATATATCGATGTGGCGTGTCTTTTGTCCTGTATATAAGCTACTT
TTGCGACTCACCCTTTCCTCCCTCCCTTCCTCCCTCCCTCCTTCCCTCCC
CCCC
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Coding sequence (CDS) from alignment at scaffold_27:297964..299117+

>mRNA_8732 ID=mRNA_8732|Name=jgi.p|Nanoce1779_2|216838|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_27:297964..299117+ (Nannochloropsis oceanica)
ATGCTACGTCGCTTACTGCTTTCGGCGGCCCCAGTCAGCTCCAGAAGGAG
AAGTGCCAAGACTCTTTCTCCTGCAGGAGCAACAGCGGCAAGGGCGTCTG
GGGCAGGGCGATTACCTTATTTATCTCCATCTCCCTTGTCCCCTCTGGTT
GTGGTGCCTCGACGGGGATTGCGCTCGCGAGGTGGAAGAGGAGGGGCTGC
AGGAGCAGGAGGATCGAAGACAACGGCATTCCCCGCTCCTTCGTCCCTCC
GTCCAGATGTTCAGATGGAAGACAAGAAGGAGGTGTCGGAGGAGGAGGAG
GAAGGGAAGGAGGCTCTCCCCTCGGCATCCAGGAATAGGACAAGCAAAGT
GAAGCTGTCCCACGCGCGAGAGCAATGGGAACAGCAACAACGAGAAGCCG
CTTCCTCCTTCTCCTCTTCGCTAGACGAGGATGAAGAGGAGGATGAGGAG
GACGAGGAGGACGAGGGATGGATGGAGGAGTTGGACGAATGCATTGAGGA
CGAGGAGGAGGTGGAAATGAACATGCTGGTCCGCTCCCTTCCGGTTGAGA
GAGGGAGGGAGGCAGGAATGGTACGGAACCTCCCGATCGTCTGCCACAGG
GCAGCGGGGACGAAGGAGTGGGCTTTGTGCTTGGGGAGGGAGGGAGGGGG
GAGGAGGAGGCGAGGAAGAAGGCTGCCTTATGGGAGCTGGTGGACGACCG
AGGGGTGCAGGAGGAGGAGGATCGATGTAGGGAAAAAGGGAGAGAGGGAG
GGAGGGGAATGA
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Synonyms
Publications