jgi.p|Nanoce1779_2|603800, mRNA_8731 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603800
Unique NamemRNA_8731
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1405
Alignment locationscaffold_27:297562..298966 +

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Properties
Property NameValue
TranscriptId603886
TrackFilteredModels2
ProteinId603800
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:297562..298966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603800gene_8731Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603800mRNA_8731-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8731CDS_8731Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8731 ID=mRNA_8731|Name=jgi.p|Nanoce1779_2|603800|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp
ATGATGAGGAGGTGGAAGAGAGGAGACGGCGGCAGGAGCAGGAAGCGCGC
TGGTGGGGAGGGAAAGAGGAGGGGAAGAGGAAGGCAGATCGAGAGAAGAA
GGAAGGAGGAGGGCTAGGACGATGATGATGGTGGACACTGTGAATGGAGG
CAGGAAGAAGGAGGAGCAGGAGCAGGGGTAGGAGGCGCAGAGGGGGGCGT
GGGAGATGGAGGACGGATAGCAGTCCAGGGGAAGGAGGTCTTTGGACAGG
AGGAAGACAAGTTGCTTCGAATTGTGATAGTGGCAAGCGCTGCCTTTGCC
GCTCTCCCTCCATCTCCATACTGCTGCCCCTGCTGGGGAGTCGCCTGTCT
TGTATGTGTGTATGTGTGGGTGGTGTTTTGGTCAAGTGGACAGAGGAATG
GCAGTTGAAGGGCAACGGGCCATCTTCAGGACGACGACTCGGAGATGACG
GGTTGCGGATAACCCCAGTCCTTGCGTGCCTTCCTGCCTACGCCTGCTCT
CCCTCTCTTGGTGTAAAAGCTTCACACACCACTACTGTTGTCCTTACTAA
ATCACGCCATTCCTACACACACCAACAGCATAGACTGCGGCAGCCCCACC
ACCAACCGGGCCAAGGCAAAACCTCCTCTATCCCATCGACAGGCAGGTAG
CCCGCCTCGCCCTCACCCCCCCTCCTTCATCCAATGCTACGTCGCTTACT
GCTTTCGGCGGCCCCAGTCAGCTCCAGAAGGAGAAGTGCCAAGACTCTTT
CTCCTGCAGGAGCAACAGCGGCAAGGGCGTCTGGGGCAGGGCGATTACCT
TATTTATCTCCATCTCCCTTGTCCCCTCTGGTTGTGGTGCCTCGACGGGG
ATTGCGCTCGCGAGGTGGAAGAGGAGGGGCTGCAGGAGCAGGAGGATCGA
AGACAACGGCATTCCCCGCTCCTTCGTCCCTCCGTCCAGATGTTCAGATG
GAAGACAAGAAGGAGGTGTCGGAGGAGGAGGAGGAAGGGAAGGAGGCTCT
CCCCTCGGCATCCAGGAATAGGACAAGCAAAGTGAAGCTGTCCCACGCGC
GAGAGCAATGGGAACAGCAACAACGAGAAGCCGCTTCCTCCTTCTCCTCT
TCGCTAGACGAGGATGAAGAGGAGGATGAGGAGGACGAGGAGGACGAGGG
ATGGATGGAGGAGTTGGACGAATGCATTGAGGACGAGGAGGAGGTGGAAA
TGAACATGCTGGTCCGCTCCCTTCCGGTTGAGAGAGGGAGGGAGGCAGGA
ATGGTACGGAACCTCCCGATCGTCTGCCACAGGGCAGCGGGGACGAAGGA
GTGGGCTTTGTGCTTGGGGAGGGAGGGAGGGGGGAGGAGGAGGCGAGGAA
GAAGGCTGCCTTATGGGAGCTGGTGGACGACCGAGGGGTGCAGGAGGAGG
AGGAT
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protein sequence of jgi.p|Nanoce1779_2|603800

>mRNA_8731-protein ID=mRNA_8731-protein|Name=jgi.p|Nanoce1779_2|603800|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MEAGRRRSRSRGRRRRGGRGRWRTDSSPGEGGLWTGGRQVASNCDSGKRC
LCRSPSISILLPLLGSRLSCMCVCVGGVLVKWTEEWQLKGNGPSSGRRLG
DDGLRITPVLACLPAYACSPSLGVKASHTTTVVLTKSRHSYTHQQHRLRQ
PHHQPGQGKTSSIPSTGR*
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mRNA from alignment at scaffold_27:297562..298966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8731 ID=mRNA_8731|Name=jgi.p|Nanoce1779_2|603800|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at scaffold_27:297562..298966+ (Nannochloropsis oceanica)
ATGATGAGGAGGTGGAAGAGAGGAGACGGCGGCAGGAGCAGGAAGCGCGC
TGGTGGGGAGGGAAAGAGGAGGGGAAGAGGAAGGCAGATCGAGAGAAGAA
GGAAGGAGGAGGGCTAGGACGATGATGATGGTGGACACTGTGAATGGAGG
CAGGAAGAAGGAGGAGCAGGAGCAGGGGTAGGAGGCGCAGAGGGGGGCGT
GGGAGATGGAGGACGGATAGCAGTCCAGGGGAAGGAGGTCTTTGGACAGG
AGGAAGACAAGTTGCTTCGAATTGTGATAGTGGCAAGCGCTGCCTTTGCC
GCTCTCCCTCCATCTCCATACTGCTGCCCCTGCTGGGGAGTCGCCTGTCT
TGTATGTGTGTATGTGTGGGTGGTGTTTTGGTCAAGTGGACAGAGGAATG
GCAGTTGAAGGGCAACGGGCCATCTTCAGGACGACGACTCGGAGATGACG
GGTTGCGGATAACCCCAGTCCTTGCGTGCCTTCCTGCCTACGCCTGCTCT
CCCTCTCTTGGTGTAAAAGCTTCACACACCACTACTGTTGTCCTTACTAA
ATCACGCCATTCCTACACACACCAACAGCATAGACTGCGGCAGCCCCACC
ACCAACCGGGCCAAGGCAAAACCTCCTCTATCCCATCGACAGGCAGGTAG
CCCGCCTCGCCCTCACCCCCCCTCCTTCATCCAATGCTACGTCGCTTACT
GCTTTCGGCGGCCCCAGTCAGCTCCAGAAGGAGAAGTGCCAAGACTCTTT
CTCCTGCAGGAGCAACAGCGGCAAGGGCGTCTGGGGCAGGGCGATTACCT
TATTTATCTCCATCTCCCTTGTCCCCTCTGGTTGTGGTGCCTCGACGGGG
ATTGCGCTCGCGAGGTGGAAGAGGAGGGGCTGCAGGAGCAGGAGGATCGA
AGACAACGGCATTCCCCGCTCCTTCGTCCCTCCGTCCAGATGTTCAGATG
GAAGACAAGAAGGAGGTGTCGGAGGAGGAGGAGGAAGGGAAGGAGGCTCT
CCCCTCGGCATCCAGGAATAGGACAAGCAAAGTGAAGCTGTCCCACGCGC
GAGAGCAATGGGAACAGCAACAACGAGAAGCCGCTTCCTCCTTCTCCTCT
TCGCTAGACGAGGATGAAGAGGAGGATGAGGAGGACGAGGAGGACGAGGG
ATGGATGGAGGAGTTGGACGAATGCATTGAGGACGAGGAGGAGGTGGAAA
TGAACATGCTGGTCCGCTCCCTTCCGGTTGAGAGAGGGAGGGAGGCAGGA
ATGGTACGGAACCTCCCGATCGTCTGCCACAGGGCAGCGGGGACGAAGGA
GTGGGCTTTGTGCTTGGGGAGGGAGGGAGGGGGGAGGAGGAGGCGAGGAA
GAAGGCTGCCTTATGGGAGCTGGTGGACGACCGAGGGGTGCAGGAGGAGG
AGGAT
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Coding sequence (CDS) from alignment at scaffold_27:297562..298966+

>mRNA_8731 ID=mRNA_8731|Name=jgi.p|Nanoce1779_2|603800|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_27:297562..298966+ (Nannochloropsis oceanica)
ATGGAGGCAGGAAGAAGGAGGAGCAGGAGCAGGGGTAGGAGGCGCAGAGG
GGGGCGTGGGAGATGGAGGACGGATAGCAGTCCAGGGGAAGGAGGTCTTT
GGACAGGAGGAAGACAAGTTGCTTCGAATTGTGATAGTGGCAAGCGCTGC
CTTTGCCGCTCTCCCTCCATCTCCATACTGCTGCCCCTGCTGGGGAGTCG
CCTGTCTTGTATGTGTGTATGTGTGGGTGGTGTTTTGGTCAAGTGGACAG
AGGAATGGCAGTTGAAGGGCAACGGGCCATCTTCAGGACGACGACTCGGA
GATGACGGGTTGCGGATAACCCCAGTCCTTGCGTGCCTTCCTGCCTACGC
CTGCTCTCCCTCTCTTGGTGTAAAAGCTTCACACACCACTACTGTTGTCC
TTACTAAATCACGCCATTCCTACACACACCAACAGCATAGACTGCGGCAG
CCCCACCACCAACCGGGCCAAGGCAAAACCTCCTCTATCCCATCGACAGG
CAGGTAG
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Synonyms
Publications