jgi.p|Nanoce1779_2|574467, mRNA_873 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574467
Unique NamemRNA_873
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length867
Alignment locationscaffold_2:635863..637149 +

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Properties
Property NameValue
TranscriptId574553
TrackFilteredModels2
ProteinId574467
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:635863..637149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574467gene_873Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574467mRNA_873-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_873CDS_873Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_873 ID=mRNA_873|Name=jgi.p|Nanoce1779_2|574467|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
AGGGCAACCGCACAACGTATGGGACCACTATCACGAGCCATAGAGCTGTC
CATCCGAGCTTTTGCCTGTTTTCTACTGCTCGCTGTCGTCGCAGCTGTTG
GAGTCTCAAAAACCACCCTACCTGGCTTTGCACCGGCTTCAACCTCCCTC
GCGGCACCACTGGTCGCAACAACCAGAACCCGCAGCATATCGTCGACAGT
GACAGCGTCCTCGTGGTTTGGTGGTGATGGGACCAACCGCAAGGACCCTC
AGGTGTTGGTTCGGCAAGGCATGGACGTCTTCCGGCAAGGCGACGTGCAA
GGCTCGATCAAGTACTTCGACAAGGCTCTTGCTATTGGTGGAGCCGTGAT
TGAACCCTATTTATGGCAGCGGGGCCTGTCGCTGTACTACGCCGGCAAAT
ATAAGGAGGGGGCTGATCAATTTCGCAAGGATGTGGCCGTAAATCCCGCT
GATACTGAAGAGTCAATTTGGGCCTTCCTCTGCGAAGCTCAACTTGACGG
TTTCGAGAAGGCACGCAAACAAATGCTGGTCGTTCAGACTGACCCTCGTC
CTTACATGCGTCGGGCGTATGAGCTGTTCCGTGGGAAATGCACTGAAGAG
GACCTAGCTAAGGAAGGAGCGACACCTGCGTCGCCCGCTGCGTTTTATGC
CTTGTTGTATCTGGGGTTATACGCTGAGGCAAAGGGGGAGGGGGATAAGG
CACGAAACTATATTCAAGCAAGCGTGGCGACGCCATATGGGAAGGCGGGG
CGGGATTACATGACAAGTTTGGCAAGGGTACATCTGTCAGTTCGAGGATG
GGTATGATTGCTCTGAGCTTATCAGTGGCAGGGTAAATCGATAAAGAACA
TAGAATAGATGGTACAA
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protein sequence of jgi.p|Nanoce1779_2|574467

>mRNA_873-protein ID=mRNA_873-protein|Name=jgi.p|Nanoce1779_2|574467|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MGPLSRAIELSIRAFACFLLLAVVAAVGVSKTTLPGFAPASTSLAAPLVA
TTRTRSISSTVTASSWFGGDGTNRKDPQVLVRQGMDVFRQGDVQGSIKYF
DKALAIGGAVIEPYLWQRGLSLYYAGKYKEGADQFRKDVAVNPADTEESI
WAFLCEAQLDGFEKARKQMLVVQTDPRPYMRRAYELFRGKCTEEDLAKEG
ATPASPAAFYALLYLGLYAEAKGEGDKARNYIQASVATPYGKAGRDYMTS
LARVHLSVRGWV*
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mRNA from alignment at scaffold_2:635863..637149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_873 ID=mRNA_873|Name=jgi.p|Nanoce1779_2|574467|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp|location=Sequence derived from alignment at scaffold_2:635863..637149+ (Nannochloropsis oceanica)
AGGGCAACCGCACAACGTATGGGACCACTATCACGAGCCATAGAGCTGTC
CATCCGAGCTTTTGCCTGTTTTCTACTGCTCGCTGTCGTCGCAGCTGTTG
GAGTCTCAAAAACCACCCTACCTGGCTTTGCACCGGCTTCAACCTCCCTC
GCGGCACCACTGGTCGCAACAACCAGAACCCGCAGCATATCGTCGACAGT
GACAGCGTCCTCGTGGTTTGGTGGTGATGGGACCAACCGCAAGGACCCTC
AGGTGTTGGTTCGGCAAGGTAATAAACAAGTTTATGATTAAAATACTGAA
TGAAAAGCGGCAGGATAGGGGCCTCTTTTGCGGATGTGAACACGGTCCTG
GCCCGCACAAATTCAATAAATTGGATAAGGATATGCTATGGGGATATATA
TTTAGGTTAGCCCTCTATATTCCAGCGATTTGTGGCAAGCTTTTTCCTTT
GTACAACAATAATAACTTGTCATATTTCCATTCTAACTCTCACTCCCTCT
ATCCTCTCTTCCCCCCCAAGGCATGGACGTCTTCCGGCAAGGCGACGTGC
AAGGCTCGATCAAGTACTTCGACAAGGCTCTTGCTATTGGTGGAGCCGTG
ATTGAACCCTATTTATGGCAGCGGGGCCTGTCGCTGTACTACGCCGGCAA
ATATAAGGAGGGGGCTGATCAATTTCGTGGGTAACTTTCTCTTCGTGGAA
TCGTGTGTGAGGATGTGCGCGGGCTTGCGGGATGACTGCTACGACTCACG
CGGCGCCTGAGAGGAAGTTTTCTTCCTTTCCCTTACGATCATTTGTTTTC
TCCCCAGCTTTTATCTCTCACTGCCACCATCGCACACTCAACAGGCAAGG
ATGTGGCCGTAAATCCCGCTGATACTGAAGAGTCAATTTGGGCCTTCCTC
TGCGAAGCTCAACTTGACGGTTTCGAGAAGGCACGCAAACAAATGCTGGT
CGTTCAGACTGACCCTCGTCCTTACATGCGTCGGGCGTATGAGCTGTTCC
GTGGGAAATGCACTGAAGAGGACCTAGCTAAGGAAGGAGCGACACCTGCG
TCGCCCGCTGCGTTTTATGCCTTGTTGTATCTGGGGTTATACGCTGAGGC
AAAGGGGGAGGGGGATAAGGCACGAAACTATATTCAAGCAAGCGTGGCGA
CGCCATATGGGAAGGCGGGGCGGGATTACATGACAAGTTTGGCAAGGGTA
CATCTGTCAGTTCGAGGATGGGTATGATTGCTCTGAGCTTATCAGTGGCA
GGGTAAATCGATAAAGAACATAGAATAGATGGTACAA
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Coding sequence (CDS) from alignment at scaffold_2:635863..637149+

>mRNA_873 ID=mRNA_873|Name=jgi.p|Nanoce1779_2|574467|organism=Nannochloropsis oceanica|type=CDS|length=2367bp|location=Sequence derived from alignment at scaffold_2:635863..637149+ (Nannochloropsis oceanica)
ATGGGACCACTATCACGAGCCATAGAGCTGTCCATCCGAGCTTTTGCCTG
TTTTCTACTGCTCGCTGTCGTCGCAGCTGTTGGAGTCTCAAAAACCACCC
TACCTGGCTTTGCACCGGCTTCAACCTCCCTCGCGGCACCACTGGTCGCA
ACAACCAGAACCCGCAGCATATCGTCGACAGTGACAGCGTCCTCGTGGTT
TGGTGGTGATGGGACCAACCGCAAGGACCCTCAGGTGTTGGTTCGGCAAG
GCATGGACGTCTTCCGGCAAGGCGACGTGCAAGGCTCGATCAAGTACTTC
GACAAGGCTCTTGCTATTGGTGGAGCCGTGATTGAACCCTATTTATGGCA
GCGGGGCCTGTCGCTGTACTACGCCGGCAAATATAAGGAGGGGGCTGATC
AATTTCGCAAGGATGTGGCCGTAAATCCCGCTGATACTGAAGAGTCAATT
TGGGCCTTCCTCTGCGAAGCTCAACTTGACGGTTTCGAGAAGGCACGCAA
ACAAATGCTGGTCGTTCAGACTGACCCTCGTCCTTACATGCGTCGGGCGT
ATGAGCTGTTCCGTGGGAAATGCACTGAAGAGGACCTAGCTAAGGAAGGA
GCGACACCTGCGTCGCCCGCTGCGTTTTATGCCTTGTTGTATCTGGGGTT
ATACGCTGAGGCAAAGGGGGAGGGGGATAAGGCACGAAACTATATTCAAG
CAAGCGTGGCGACGCCATATGGGAAGGCGGGGCGGGATTACATGACAAGT
TTGGCAAGGGTACATCTGTCAGTTCGAGGATGGGTATGAATGGGACCACT
ATCACGAGCCATAGAGCTGTCCATCCGAGCTTTTGCCTGTTTTCTACTGC
TCGCTGTCGTCGCAGCTGTTGGAGTCTCAAAAACCACCCTACCTGGCTTT
GCACCGGCTTCAACCTCCCTCGCGGCACCACTGGTCGCAACAACCAGAAC
CCGCAGCATATCGTCGACAGTGACAGCGTCCTCGTGGTTTGGTGGTGATG
GGACCAACCGCAAGGACCCTCAGGTGTTGGTTCGGCAAGGCATGGACGTC
TTCCGGCAAGGCGACGTGCAAGGCTCGATCAAGTACTTCGACAAGGCTCT
TGCTATTGGTGGAGCCGTGATTGAACCCTATTTATGGCAGCGGGGCCTGT
CGCTGTACTACGCCGGCAAATATAAGGAGGGGGCTGATCAATTTCGCAAG
GATGTGGCCGTAAATCCCGCTGATACTGAAGAGTCAATTTGGGCCTTCCT
CTGCGAAGCTCAACTTGACGGTTTCGAGAAGGCACGCAAACAAATGCTGG
TCGTTCAGACTGACCCTCGTCCTTACATGCGTCGGGCGTATGAGCTGTTC
CGTGGGAAATGCACTGAAGAGGACCTAGCTAAGGAAGGAGCGACACCTGC
GTCGCCCGCTGCGTTTTATGCCTTGTTGTATCTGGGGTTATACGCTGAGG
CAAAGGGGGAGGGGGATAAGGCACGAAACTATATTCAAGCAAGCGTGGCG
ACGCCATATGGGAAGGCGGGGCGGGATTACATGACAAGTTTGGCAAGGGT
ACATCTGTCAGTTCGAGGATGGGTATGAATGGGACCACTATCACGAGCCA
TAGAGCTGTCCATCCGAGCTTTTGCCTGTTTTCTACTGCTCGCTGTCGTC
GCAGCTGTTGGAGTCTCAAAAACCACCCTACCTGGCTTTGCACCGGCTTC
AACCTCCCTCGCGGCACCACTGGTCGCAACAACCAGAACCCGCAGCATAT
CGTCGACAGTGACAGCGTCCTCGTGGTTTGGTGGTGATGGGACCAACCGC
AAGGACCCTCAGGTGTTGGTTCGGCAAGGCATGGACGTCTTCCGGCAAGG
CGACGTGCAAGGCTCGATCAAGTACTTCGACAAGGCTCTTGCTATTGGTG
GAGCCGTGATTGAACCCTATTTATGGCAGCGGGGCCTGTCGCTGTACTAC
GCCGGCAAATATAAGGAGGGGGCTGATCAATTTCGCAAGGATGTGGCCGT
AAATCCCGCTGATACTGAAGAGTCAATTTGGGCCTTCCTCTGCGAAGCTC
AACTTGACGGTTTCGAGAAGGCACGCAAACAAATGCTGGTCGTTCAGACT
GACCCTCGTCCTTACATGCGTCGGGCGTATGAGCTGTTCCGTGGGAAATG
CACTGAAGAGGACCTAGCTAAGGAAGGAGCGACACCTGCGTCGCCCGCTG
CGTTTTATGCCTTGTTGTATCTGGGGTTATACGCTGAGGCAAAGGGGGAG
GGGGATAAGGCACGAAACTATATTCAAGCAAGCGTGGCGACGCCATATGG
GAAGGCGGGGCGGGATTACATGACAAGTTTGGCAAGGGTACATCTGTCAG
TTCGAGGATGGGTATGA
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Synonyms
Publications