jgi.p|Nanoce1779_2|642083, mRNA_8729 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642083
Unique NamemRNA_8729
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length333
Alignment locationscaffold_27:291725..293050 +

Link to JBrowse

Properties
Property NameValue
TranscriptId642169
TrackFilteredModels2
ProteinId642083
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:291725..293050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642083gene_8729Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642083mRNA_8729-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8729CDS_8729Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8729 ID=mRNA_8729|Name=jgi.p|Nanoce1779_2|642083|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
ATGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTTATGACGG
CTTAGAGGCACTAGAAAGAGATGTCGCCGGTGCCAGTGGAATGGCCAGTA
TGGGAGGAGGAGCGACGACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGG
GGACCCGGGGGGCAAGTGACGGCGCGCGCACGGGGCGGCGCATCCTCGGC
CGGCATCCTGCGATTCTACACGGACGAGGCGCCAGGGCTCAGAGTCGGCC
CCCAAGTGGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTC
CTCCACATCTGGGCCAAGTTCACCTCCAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|642083

>mRNA_8729-protein ID=mRNA_8729-protein|Name=jgi.p|Nanoce1779_2|642083|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLSVAWAAAAADEAYDGLEALERDVAGASGMASMGGGATTGPLSRPAPAR
GPGGQVTARARGGASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVL
LHIWAKFTSK*
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mRNA from alignment at scaffold_27:291725..293050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8729 ID=mRNA_8729|Name=jgi.p|Nanoce1779_2|642083|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp|location=Sequence derived from alignment at scaffold_27:291725..293050+ (Nannochloropsis oceanica)
ATGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTTATGACGG
CTTAGAGGCGTAGAGACCCTATCCACGACAATACTCGCACGCCTTCTCAA
CCTCCCACACCGTATGCATATTATCAACAGGTCGAACGCGCACCTCGCCG
CTTCGCCCTTCCTCTCTCAACCCCCAAGACTAGAAAGAGATGGTACGTCC
CCTCGTCCCCTTCCCTGCCGTGCTCCTCAAAGCCCCCCTCTCAAGCCCTC
ATCCCTCACCCTGTTCCTTTCCCTTCCAATCGCGTCACCATCAGTCTGCA
CGCGCAGTCGCCGGTGCCAGTGGAATGGCCAGTATGGGAGGAGGAGCGAC
GACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGGGGACCCGGGGGGCAAG
TGACGGCGCGCGCACGGTACGGAGGGAGGGAGAGGGAGGAAAGGGAAGGG
AGGGGAGTGAAGAAGAGGGAGGGGCGGGGAGAAGAGGGAGGCACTACCGG
GGAGGGGAGGGGAGGGAGGCACCACCGGGGAGGAGATAAGGACGAGACAG
AAACACGGAGGAGGTTGGGAAGGAGGATGAGGAGATGAGAGGGGAAGAAA
CCTGCATCAGTCGATAGAGATTTTCATCTTTCGGCTTCTCCCCCTCATTT
TGGGGATGATGCATTCACTCGTTCACTTATTCATTTGGTTTTCGGTTTGT
CTATTTATCCCTGGATGTGTGACAGGGGGGCGCGCGCGCAGCGAGCAACG
ACGGGGGGGGCGCAGAGCAGCCGGTGCGTGGAAGGAGAATGAGAAATGGA
GGGAAGGAGGGGGGAGAGCAGAGGAAGGGAGGGAGGGAGGGACGGAAGAG
CTGGAGATATTATACCTTGAAGGGCGACTACTTTCAAGGACGTTTTCTTC
TCATCTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCACCCTCCC
TCTCTCCACCAAACCAGGGGCGGCGCATCCTCGGCCGGCATCCTGCGATT
CTACACGGACGAGGCGCCAGGGCTCAGAGTGTACGTACCACTCCCTCCCT
CCCCCACTCCTTCCCTCCCCCTCTATCCCTCCTTCTTTCCTGTCTTGGAT
TCCCTCTTCCTACTCTCTTGTGTTCCCATCATTCTCCCTTCCTCTCCCTC
TTTCCTCCTTTTGTCCTCCTCATTGCAACCACGCATCTAATCTTCTCCGC
ACATCATGCTCTCCCTCCCTCCCTCCCCCCCCCGACAGCGGCCCCCAAGT
GGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTCCTCCACA
TCTGGGCCAAGTTCACCTCCAAGTAG
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Coding sequence (CDS) from alignment at scaffold_27:291725..293050+

>mRNA_8729 ID=mRNA_8729|Name=jgi.p|Nanoce1779_2|642083|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_27:291725..293050+ (Nannochloropsis oceanica)
ATGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTTATGACGG
CTTAGAGGCACTAGAAAGAGATGTCGCCGGTGCCAGTGGAATGGCCAGTA
TGGGAGGAGGAGCGACGACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGG
GGACCCGGGGGGCAAGTGACGGCGCGCGCACGGGGCGGCGCATCCTCGGC
CGGCATCCTGCGATTCTACACGGACGAGGCGCCAGGGCTCAGAGTCGGCC
CCCAAGTGGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTC
CTCCACATCTGGGCCAAGTTCACCTCCAAGTAGATGTTGTCGGTTGCTTG
GGCTGCTGCTGCTGCTGATGAGGCTTATGACGGCTTAGAGGCACTAGAAA
GAGATGTCGCCGGTGCCAGTGGAATGGCCAGTATGGGAGGAGGAGCGACG
ACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGGGGACCCGGGGGGCAAGT
GACGGCGCGCGCACGGGGCGGCGCATCCTCGGCCGGCATCCTGCGATTCT
ACACGGACGAGGCGCCAGGGCTCAGAGTCGGCCCCCAAGTGGTGCTAGTG
TCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTCCTCCACATCTGGGCCAA
GTTCACCTCCAAGTAGATGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTG
ATGAGGCTTATGACGGCTTAGAGGCACTAGAAAGAGATGTCGCCGGTGCC
AGTGGAATGGCCAGTATGGGAGGAGGAGCGACGACAGGCCCCTTGTCTCG
CCCTGCCCCAGCAAGGGGACCCGGGGGGCAAGTGACGGCGCGCGCACGGG
GCGGCGCATCCTCGGCCGGCATCCTGCGATTCTACACGGACGAGGCGCCA
GGGCTCAGAGTCGGCCCCCAAGTGGTGCTAGTGTCCTCGCTGGCCTTCAT
CGGCGTCGTGGTGCTCCTCCACATCTGGGCCAAGTTCACCTCCAAGTAGA
TGTTGTCGGTTGCTTGGGCTGCTGCTGCTGCTGATGAGGCTTATGACGGC
TTAGAGGCACTAGAAAGAGATGTCGCCGGTGCCAGTGGAATGGCCAGTAT
GGGAGGAGGAGCGACGACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGGG
GACCCGGGGGGCAAGTGACGGCGCGCGCACGGGGCGGCGCATCCTCGGCC
GGCATCCTGCGATTCTACACGGACGAGGCGCCAGGGCTCAGAGTCGGCCC
CCAAGTGGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTCGTGGTGCTCC
TCCACATCTGGGCCAAGTTCACCTCCAAGTAGATGTTGTCGGTTGCTTGG
GCTGCTGCTGCTGCTGATGAGGCTTATGACGGCTTAGAGGCACTAGAAAG
AGATGTCGCCGGTGCCAGTGGAATGGCCAGTATGGGAGGAGGAGCGACGA
CAGGCCCCTTGTCTCGCCCTGCCCCAGCAAGGGGACCCGGGGGGCAAGTG
ACGGCGCGCGCACGGGGCGGCGCATCCTCGGCCGGCATCCTGCGATTCTA
CACGGACGAGGCGCCAGGGCTCAGAGTCGGCCCCCAAGTGGTGCTAGTGT
CCTCGCTGGCCTTCATCGGCGTCGTGGTGCTCCTCCACATCTGGGCCAAG
TTCACCTCCAAGTAG
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Synonyms
Publications