jgi.p|Nanoce1779_2|216683, mRNA_8725 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|216683
Unique NamemRNA_8725
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1412
Alignment locationscaffold_27:275409..277106 +

Link to JBrowse

Properties
Property NameValue
TranscriptId216769
TrackFilteredModels2
ProteinId216683
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:275409..277106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|216683gene_8725Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|216683mRNA_8725-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8725CDS_8725Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8725 ID=mRNA_8725|Name=jgi.p|Nanoce1779_2|216683|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp
TGAAATTTCCGTTGGATAATTTTCGGATTTTCAAACCGCTACTCGATCGA
GCAAGCACCCTCCAAGCACCTCTCTTTGCCTCTCCGCCCCAACGAGTGTA
CAGGCATGTCATTATTTCCTTCATCGTTGCGCATCCTTTGACACTTAGAA
TCCACTCTGTCTTCACGCAGGAGACATAATGAGCCTCCCGTCGTCTTCGT
CGTCGTCTGCGTCAAACAACCCGCCGGACACCGCCCGGCGAGGCAGCCGA
ACGGAATCAGGAACTACACAAGGGGATGTAAATGAAGTGGAACAAGGTGC
TGGAGGAGGAGTTGAAGAAGGAGGGAGATTAGGAGGAACAGGAAGAGGGG
AAGGAGGAGGAGAAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGACCGAGC
AGGAATGAGCGGCAGCTTTCGGCTAGCGTCGTAGAGGTGGAGGAAGATGT
AGCCATTAAACGAAAGGAGCAGGCGGATGTGTGCCCGGGGGCCGTCCTAG
AGGAAGAAATGGGGTTGGAATCTACTTCCGTGATGAAACACCGAGAGCAT
CCTCGCTGCCACTCCTCCTCCTGCCGTGCAGCTTCTGATTCTGCCGCTTT
CGAAGATACCAGCAACCACAACCACACTAGCCGACGGGCTAACAACCACC
TCTCTTCGTTTTCATCCTCTTCTTCTTTATCCTCCTCTTTCTCCTCCACT
TCTATTTCGCCTTGCAACAACCATACCCACCACAAAGACGGGGGGCGAGA
GTCTTACGTGGATCCCCCCCACCATCCCTCCCCCCCTCCCTCCATCCTCT
TCTCCCGCACTATTCGGCCCTCCCCTCTCCATCACCATCGTGCCTCCTGC
TGCCTCCCGTCTGGATGGGCCTGCACCACTCGTGTCTTTGGCGTTATCTT
CTCTCTTATTGGCTCCCTGGCCCTCGTCCTCTTTCTCCTCTCCCACACCA
CCCTTCCCTCCCTCCGGGACCGAACGGTGCTCAACGCCATGATCGTCTCC
TCTCCCTCCTCCCCCTCCTACGCAGCCTGGGCTTCCTCCGCCGCCGAAGT
CTCCGACTCCCCCCTCTTGACCTCCTACTACTTCTTCTCCATCCTCAACC
CAACCCCCTTTCTGACCGAGCGGGCCCTCCCCCGCTATCTGGAGAAGGGA
CCTTACGTTTTCAAGCAGCGCTCCAGCAAGACATCCGTGTCCTTCTCGGA
GGACGGCACCTTGGTCAGCTACGTCACTCTCGTACAAAATGATTTTGTGC
CGGAGAAGAGGTGACAAAGGAGGGGGGAGAGAGGGGAAACGGGAAGACCC
TGACTGATGAGCGCCTGGAGCATCACGGATATCTGTCAACTTAGACGTCA
GATCAGTCACAAGTGTGTGGGCGATGAAACCCACAGTGCTTCTGACATGA
TACCTCCTTTTG
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protein sequence of jgi.p|Nanoce1779_2|216683

>mRNA_8725-protein ID=mRNA_8725-protein|Name=jgi.p|Nanoce1779_2|216683|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MSLPSSSSSSASNNPPDTARRGSRTESGTTQGDVNEVEQGAGGGVEEGGR
LGGTGRGEGGGEGGGGGGGGGGPSRNERQLSASVVEVEEDVAIKRKEQAD
VCPGAVLEEEMGLESTSVMKHREHPRCHSSSCRAASDSAAFEDTSNHNHT
SRRANNHLSSFSSSSSLSSSFSSTSISPCNNHTHHKDGGRESYVDPPHHP
SPPPSILFSRTIRPSPLHHHRASCCLPSGWACTTRVFGVIFSLIGSLALV
LFLLSHTTLPSLRDRTVLNAMIVSSPSSPSYAAWASSAAEVSDSPLLTSY
YFFSILNPTPFLTERALPRYLEKGPYVFKQRSSKTSVSFSEDGTLVSYVT
LVQNDFVPEKR*
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mRNA from alignment at scaffold_27:275409..277106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8725 ID=mRNA_8725|Name=jgi.p|Nanoce1779_2|216683|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp|location=Sequence derived from alignment at scaffold_27:275409..277106+ (Nannochloropsis oceanica)
TGAAATTTCCGTTGGATAATTTTCGGATTTTCAAACCGCTACTCGATCGA
GCAAGCACCCTCCAAGCACCTCTCTTTGCCTCTCCGCCCCAACGAGTGTA
CAGGCATGTCATTATTTCCTTCATCGTTGCGCATCCTTTGACACTTAGAA
TCCACTCTGTCTTCACGCAGGAGACATAATGAGCCTCCCGTCGTCTTCGT
CGTCGTCTGCGTCAAACAACCCGCCGGACACCGCCCGGCGAGGCAGCCGA
ACGGAATCAGGAACTACACAAGGGGATGTAAATGAAGTGGAACAAGGTGC
TGGAGGAGGAGTTGAAGAAGGAGGGAGATTAGGAGGAACAGGAAGAGGGG
AAGGAGGAGGAGAAGGAGGAGGAGGGGGAGGCGGAGGCGGAGGACCGAGC
AGGAATGAGCGGCAGCTTTCGGCTAGCGTCGTAGAGGTGGAGGAAGATGT
AGCCATTAAACGAAAGGAGCAGGCGGATGTGTGCCCGGGGGCCGTCCTAG
AGGAAGAAATGGGGTTGGAATCTACTTCCGTGGTAAGTATCTATGCTGTC
TGACTTGCGTAAGAGAGAGGTCTCGGGGGGTTCTTACATTGGTGTTTGTG
AATTGATTGTCATACGCGCGGTTGGTTCCTATCTTTCAGCAATCTCATTA
TTTCTCTCAGGCTCTGAGACATCCTGGTTTTTCATTTCGCCCTCCCATCC
CCTCCCAAGTCACCCTTGCCTCCTCCATTCAATATCTCACCTCTTCCCCT
CTTTGGTCTCTCTTCCTCACCTCTCTCCTTGTTCGAATTCTTCTTTCCCT
CCCCCGACAACCATTTAGATGAAACACCGAGAGCATCCTCGCTGCCACTC
CTCCTCCTGCCGTGCAGCTTCTGATTCTGCCGCTTTCGAAGATACCAGCA
ACCACAACCACACTAGCCGACGGGCTAACAACCACCTCTCTTCGTTTTCA
TCCTCTTCTTCTTTATCCTCCTCTTTCTCCTCCACTTCTATTTCGCCTTG
CAACAACCATACCCACCACAAAGACGGGGGGCGAGAGTCTTACGTGGATC
CCCCCCACCATCCCTCCCCCCCTCCCTCCATCCTCTTCTCCCGCACTATT
CGGCCCTCCCCTCTCCATCACCATCGTGCCTCCTGCTGCCTCCCGTCTGG
ATGGGCCTGCACCACTCGTGTCTTTGGCGTTATCTTCTCTCTTATTGGCT
CCCTGGCCCTCGTCCTCTTTCTCCTCTCCCACACCACCCTTCCCTCCCTC
CGGGACCGAACGGTGCTCAACGCCATGATCGTCTCCTCTCCCTCCTCCCC
CTCCTACGCAGCCTGGGCTTCCTCCGCCGCCGAAGTCTCCGACTCCCCCC
TCTTGACCTCCTACTACTTCTTCTCCATCCTCAACCCAACCCCCTTTCTG
ACCGAGCGGGCCCTCCCCCGCTATCTGGAGAAGGGACCTTACGTTTTCAA
GCAGCGCTCCAGCAAGACATCCGTGTCCTTCTCGGAGGACGGCACCTTGG
TCAGCTACGTCACTCTCGTACAAAATGATTTTGTGCCGGAGAAGAGGTGA
CAAAGGAGGGGGGAGAGAGGGGAAACGGGAAGACCCTGACTGATGAGCGC
CTGGAGCATCACGGATATCTGTCAACTTAGACGTCAGATCAGTCACAAGT
GTGTGGGCGATGAAACCCACAGTGCTTCTGACATGATACCTCCTTTTG
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Coding sequence (CDS) from alignment at scaffold_27:275409..277106+

>mRNA_8725 ID=mRNA_8725|Name=jgi.p|Nanoce1779_2|216683|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_27:275409..277106+ (Nannochloropsis oceanica)
ATGAGCCTCCCGTCGTCTTCGTCGTCGTCTGCGTCAAACAACCCGCCGGA
CACCGCCCGGCGAGGCAGCCGAACGGAATCAGGAACTACACAAGGGGATG
TAAATGAAGTGGAACAAGGTGCTGGAGGAGGAGTTGAAGAAGGAGGGAGA
TTAGGAGGAACAGGAAGAGGGGAAGGAGGAGGAGAAGGAGGAGGAGGGGG
AGGCGGAGGCGGAGGACCGAGCAGGAATGAGCGGCAGCTTTCGGCTAGCG
TCGTAGAGGTGGAGGAAGATGTAGCCATTAAACGAAAGGAGCAGGCGGAT
GTGTGCCCGGGGGCCGTCCTAGAGGAAGAAATGGGGTTGGAATCTACTTC
CGTGATGAAACACCGAGAGCATCCTCGCTGCCACTCCTCCTCCTGCCGTG
CAGCTTCTGATTCTGCCGCTTTCGAAGATACCAGCAACCACAACCACACT
AGCCGACGGGCTAACAACCACCTCTCTTCGTTTTCATCCTCTTCTTCTTT
ATCCTCCTCTTTCTCCTCCACTTCTATTTCGCCTTGCAACAACCATACCC
ACCACAAAGACGGGGGGCGAGAGTCTTACGTGGATCCCCCCCACCATCCC
TCCCCCCCTCCCTCCATCCTCTTCTCCCGCACTATTCGGCCCTCCCCTCT
CCATCACCATCGTGCCTCCTGCTGCCTCCCGTCTGGATGGGCCTGCACCA
CTCGTGTCTTTGGCGTTATCTTCTCTCTTATTGGCTCCCTGGCCCTCGTC
CTCTTTCTCCTCTCCCACACCACCCTTCCCTCCCTCCGGGACCGAACGGT
GCTCAACGCCATGATCGTCTCCTCTCCCTCCTCCCCCTCCTACGCAGCCT
GGGCTTCCTCCGCCGCCGAAGTCTCCGACTCCCCCCTCTTGACCTCCTAC
TACTTCTTCTCCATCCTCAACCCAACCCCCTTTCTGACCGAGCGGGCCCT
CCCCCGCTATCTGGAGAAGGGACCTTACGTTTTCAAGCAGCGCTCCAGCA
AGACATCCGTGTCCTTCTCGGAGGACGGCACCTTGGTCAGCTACGTCACT
CTCGTACAAAATGATTTTGTGCCGGAGAAGAGGTGAATGAGCCTCCCGTC
GTCTTCGTCGTCGTCTGCGTCAAACAACCCGCCGGACACCGCCCGGCGAG
GCAGCCGAACGGAATCAGGAACTACACAAGGGGATGTAAATGAAGTGGAA
CAAGGTGCTGGAGGAGGAGTTGAAGAAGGAGGGAGATTAGGAGGAACAGG
AAGAGGGGAAGGAGGAGGAGAAGGAGGAGGAGGGGGAGGCGGAGGCGGAG
GACCGAGCAGGAATGAGCGGCAGCTTTCGGCTAGCGTCGTAGAGGTGGAG
GAAGATGTAGCCATTAAACGAAAGGAGCAGGCGGATGTGTGCCCGGGGGC
CGTCCTAGAGGAAGAAATGGGGTTGGAATCTACTTCCGTGATGAAACACC
GAGAGCATCCTCGCTGCCACTCCTCCTCCTGCCGTGCAGCTTCTGATTCT
GCCGCTTTCGAAGATACCAGCAACCACAACCACACTAGCCGACGGGCTAA
CAACCACCTCTCTTCGTTTTCATCCTCTTCTTCTTTATCCTCCTCTTTCT
CCTCCACTTCTATTTCGCCTTGCAACAACCATACCCACCACAAAGACGGG
GGGCGAGAGTCTTACGTGGATCCCCCCCACCATCCCTCCCCCCCTCCCTC
CATCCTCTTCTCCCGCACTATTCGGCCCTCCCCTCTCCATCACCATCGTG
CCTCCTGCTGCCTCCCGTCTGGATGGGCCTGCACCACTCGTGTCTTTGGC
GTTATCTTCTCTCTTATTGGCTCCCTGGCCCTCGTCCTCTTTCTCCTCTC
CCACACCACCCTTCCCTCCCTCCGGGACCGAACGGTGCTCAACGCCATGA
TCGTCTCCTCTCCCTCCTCCCCCTCCTACGCAGCCTGGGCTTCCTCCGCC
GCCGAAGTCTCCGACTCCCCCCTCTTGACCTCCTACTACTTCTTCTCCAT
CCTCAACCCAACCCCCTTTCTGACCGAGCGGGCCCTCCCCCGCTATCTGG
AGAAGGGACCTTACGTTTTCAAGCAGCGCTCCAGCAAGACATCCGTGTCC
TTCTCGGAGGACGGCACCTTGGTCAGCTACGTCACTCTCGTACAAAATGA
TTTTGTGCCGGAGAAGAGGTGA
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Synonyms
Publications