jgi.p|Nanoce1779_2|673643, mRNA_8720 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673643
Unique NamemRNA_8720
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_27:258527..259552 -

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Properties
Property NameValue
TranscriptId673729
TrackFilteredModels2
ProteinId673643
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:258527..259552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673643gene_8720Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673643mRNA_8720-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8720CDS_8720Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8720 ID=mRNA_8720|Name=jgi.p|Nanoce1779_2|673643|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
GTCCTTGCCGCATGCTGCAGGTGCATGGGAGGGGACGCCAGGTCAGGCAG
CGATGCCGAGGCCGAGAAAGACGGAGTCATGGGAGGGAGGGAAGGAGGGA
GGGAAGGAGGGAGGGAGGGCGAGACATTGCCGCTGAGGGCTTCTTTATTT
TTGGAGGGCGTTTGGAAGGTGGAGGACGGGTGAGAGGGAGGGGGGTTAGT
GAGTTGCTGCCGGTGCTGGTGCTGGTGCTGGTGGTGCTGGTGCTGGTGGT
GCTGCTGGTGCTGGTACTCATGCTGGTGCTGGTGGTGCTGGTGGTGCTGG
TGGTGCTGGTGCTGATCGAGGCTGTCCAAAATGTCCTTCTCGAAACGCAG
CCAGACAAGGGCGACGAGGAGGGAGAGGGAGAAGAGGAGGCACGCGAGCA
CGTGAATGGCAACTGGCTGAGGGGAGGAGGGATGGAGGGAAGGAGGTAGC
AGAGGAGGGATAGGTAGGTGAGTGATTGGAAAGAAAGCAGCCTCTTCACG
TCCCTCCCTCCCTCCTTCCCTCATTTGCTCTCAACCCCCTTGCTTTTGCT
CACCAGTGGCTCCACTCGTGGGGCCTCTGGAGGAAGATTGCCTCCTCCAC
GCATGACTGCCTCCAATACATCATGCAGCCCAATTCCCCTCCCTCCCTCC
CTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|673643

>mRNA_8720-protein ID=mRNA_8720-protein|Name=jgi.p|Nanoce1779_2|673643|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MLQVHGRGRQVRQRCRGRERRSHGREGRREGRREGGRDIAAEGFFIFGGR
LEGGGRVRGRGVSELLPVLVLVLVVLVLVVLLVLVLMLVLVVLVVLVVLV
LIEAVQNVLLETQPDKGDEEGEGEEEAREHVNGNWLRGGGMEGRR*
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mRNA from alignment at scaffold_27:258527..259552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8720 ID=mRNA_8720|Name=jgi.p|Nanoce1779_2|673643|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp|location=Sequence derived from alignment at scaffold_27:258527..259552- (Nannochloropsis oceanica)
GTCCTTGCCGCATGCTGCAGGTGCATGGGAGGGGACGCCAGGTCAGGCAG
CGATGCCGAGGCCGAGAAAGACGGAGTCATGGGAGGGAGGGAAGGAGGGA
GGGAAGGAGGGAGGGAGGGCGAGACATTGCCGCTGAGGGCTTCTTTATTT
TTGGAGGGCGTTTGGAAGGTGGAGGACGGGTGAGAGGGAGGGGGGTTAGT
GAGTTGCTGCCGGTGCTGGTGCTGGTGCTGGTGGTGCTGGTGCTGGTGGT
GCTGCTGGTGCTGGTACTCATGCTGGTGCTGGTGGTGCTGGTGGTGCTGG
TGGTGCTGGTGCTGGTGCTGACCCTTTTCTTCACCCGTGCCCTCGTCCTC
CTCCTCGACGCATGCCGCACCTATTGCCTTCTCCCTACTGCCGCCGCCTG
CCTCCGTGCCCCAGCCACGTGGACCTCGAGATGGAGTCTCCCCCTCCCCA
AGCCCTCCCTCCCTCACTTTCTCCAGCGCACATACCCCATTTATCCCTCC
CCCCTCGCCCCTTCCCCTCCTCATCCCCTCCTCTTTCTCGCCCTCCCTCT
CCTTTTGACAAAGTACACACCACTCACACTCCCCCTCTTTCTCTTCCCCC
CCGTCCCCCTCCCCACCCATCGACCCCTTCCTTCTCCTCCTCTTCTGCCT
GCTTGCCTCCCTCCCTCCCATCCTCCCCGGAAGATCGAGGCTGTCCAAAA
TGTCCTTCTCGAAACGCAGCCAGACAAGGGCGACGAGGAGGGAGAGGGAG
AAGAGGAGGCACGCGAGCACGTGAATGGCAACTGGCTGAGGGGAGGAGGG
ATGGAGGGAAGGAGGTAGCAGAGGAGGGATAGGTAGGTGAGTGATTGGAA
AGAAAGCAGCCTCTTCACGTCCCTCCCTCCCTCCTTCCCTCATTTGCTCT
CAACCCCCTTGCTTTTGCTCACCAGTGGCTCCACTCGTGGGGCCTCTGGA
GGAAGATTGCCTCCTCCACGCATGACTGCCTCCAATACATCATGCAGCCC
AATTCCCCTCCCTCCCTCCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_27:258527..259552-

>mRNA_8720 ID=mRNA_8720|Name=jgi.p|Nanoce1779_2|673643|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_27:258527..259552- (Nannochloropsis oceanica)
ATCGAGGCTGTCCAAAATGTCCTTCTCGAAACGCAGCCAGACAAGGGCGA
CGAGGAGGGAGAGGGAGAAGAGGAGGCACGCGAGCACGTGAATGGCAACT
GGCTGAGGGGAGGAGGGATGGAGGGAAGGAGGTAGATGCTGCAGGTGCAT
GGGAGGGGACGCCAGGTCAGGCAGCGATGCCGAGGCCGAGAAAGACGGAG
TCATGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGGCGAGACA
TTGCCGCTGAGGGCTTCTTTATTTTTGGAGGGCGTTTGGAAGGTGGAGGA
CGGGTGAGAGGGAGGGGGGTTAGTGAGTTGCTGCCGGTGCTGGTGCTGGT
GCTGGTGGTGCTGGTGCTGGTGGTGCTGCTGGTGCTGGTACTCATGCTGG
TGCTGGTGGTGCTGGTGGTGCTGGTGGTGCTGGTGCTGATCGAGGCTGTC
CAAAATGTCCTTCTCGAAACGCAGCCAGACAAGGGCGACGAGGAGGGAGA
GGGAGAAGAGGAGGCACGCGAGCACGTGAATGGCAACTGGCTGAGGGGAG
GAGGGATGGAGGGAAGGAGGTAGATGCTGCAGGTGCATGGGAGGGGACGC
CAGGTCAGGCAGCGATGCCGAGGCCGAGAAAGACGGAGTCATGGGAGGGA
GGGAAGGAGGGAGGGAAGGAGGGAGGGAGGGCGAGACATTGCCGCTGAGG
GCTTCTTTATTTTTGGAGGGCGTTTGGAAGGTGGAGGACGGGTGAGAGGG
AGGGGGGTTAGTGAGTTGCTGCCGGTGCTGGTGCTGGTGCTGGTGGTGCT
GGTGCTGGTGGTGCTGCTGGTGCTGGTACTCATGCTGGTGCTGGTGGTGC
TGGTGGTGCTGGTGGTGCTGGTGCTG
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Synonyms
Publications