jgi.p|Nanoce1779_2|574461, mRNA_872 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574461
Unique Name	mRNA_872
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1396
Alignment location	scaffold_2:633559..635665 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574547
Track	FilteredModels2
ProteinId	574461

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:633559..635665 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574461	gene_872	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574461	mRNA_872-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_872	CDS_872	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:633559..635665+
coding sequence from alignment at scaffold_2:633559..635665+

mRNA sequence

>mRNA_872 ID=mRNA_872|Name=jgi.p|Nanoce1779_2|574461|organism=Nannochloropsis oceanica|type=mRNA|length=1396bp
ACAGAATCCTCTCTCCGCTCCTCACCATGTCTGGTGTTCTGGGCGAGAAC
TGCCACGGCAAGGGCGGCGTGCGACTCCTTAAGCTCCACCGCTCCGGCGA
CCGCCACGACTTCATCCAGCTCACGGCCCAAGTCCTTCTGACAGGTGGCT
GTGAAGACGCCTTCATCAAGGCTGATAACCGGAACATCGTCGCGACGGAT
ACGTGCAAAAACACCATCTACGTTCTAGCCCGTCGACACCACTTTGCCTC
GATCGAAGAGTTTGGAATCATCGTTGCCAAGCACTTCCTTGCTCAATACC
CGAATATCGTTTACAAGGCGGACATTCAGCTCGTCAAGGACCTGTGGACC
CGCGTGGTGAATAAGGATTCTCACGGTCGGATAGCTCAGCACAACCACGC
CTTTGTAAAGGTTGGTCCTCAGAATACCTACACGCACGTAACAGCGGAAA
AAGTGGGTGGCTCCGTCAACGTCTCCGTCCGTTCAGGCGTTCGGTCCTTG
ATTCTCCTCAAGACGACTCAGTCTGGGTTCGAGAACTTTCACCGGGACGA
ATTCAGGGCATTGGGCGACACGAACGATCGCCTTGTTGGCACCTCCATCG
ACGGCGAATGGACGTTCACCCCTACTGCAATTGCCTCCAGTCCGGATTAT
GAGATGCTTAACAAGCTGGTGGTAGATACCCTGATTGATGAATTTGCAGG
ACCTGCGGATAAGGGCGTGTATAGCGTCTCGGTCCAGCAGACGCTTTATG
ACATGGGCACGGGCTTGCTGGCGAAGGTGCCGGGGGTGGATAAAATTGAA
CTCTACATGCCCAACATCCACAACATCCCCGTGGATCTGTCCAAGTTCAA
GATGGAAAACAAGGACCATACGGGCAAGCCCGACATTTTCCTGCCTACCA
GCGACCCGCACGGGATGATCAAAGCTGTGATCGAGCGACCTCGCAGCGCC
CGCCTTTAAAATGACGTGTTGAATAAAGAGTGGAGGTCAGAGATCTTTGC
GGTGTGATAAAATAAGTGGCTGTGCCCATGGGGTGTGCCTGCCTGTGTTC
GTTTACGTTAAAGAGGCGAGAGCGCGAGACAGCGAATGAGAAGGACAATG
AAGGAAAGAAGGAGAAAAAGTCTGACAGCTAAAAGACGACGAATGGAAAT
ATAGAAAGGACCTAGGAGGAGGACTAGCAGGGAACAGTTTGGGAAGGGCC
GAATCAGGCCCACTTTCAGGCTCAGGTCCCATTTTCTTCAACTAAATATA
TGCTGAGCTAAGGTGCAGAATTGTGACAGGACGGAGACGCAAACGTGCGC
ATACGCACATACACGCACAAACCTTAAAAGTCCAAAACCGATTGACTGGA
AGTAACCCCACCCCCCGCAAAAAAAAAACGAAAACACTCAGAGACA

protein sequence of jgi.p|Nanoce1779_2|574461

>mRNA_872-protein ID=mRNA_872-protein|Name=jgi.p|Nanoce1779_2|574461|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MSGVLGENCHGKGGVRLLKLHRSGDRHDFIQLTAQVLLTGGCEDAFIKAD
NRNIVATDTCKNTIYVLARRHHFASIEEFGIIVAKHFLAQYPNIVYKADI
QLVKDLWTRVVNKDSHGRIAQHNHAFVKVGPQNTYTHVTAEKVGGSVNVS
VRSGVRSLILLKTTQSGFENFHRDEFRALGDTNDRLVGTSIDGEWTFTPT
AIASSPDYEMLNKLVVDTLIDEFAGPADKGVYSVSVQQTLYDMGTGLLAK
VPGVDKIELYMPNIHNIPVDLSKFKMENKDHTGKPDIFLPTSDPHGMIKA
VIERPRSARL*

mRNA from alignment at scaffold_2:633559..635665+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_872 ID=mRNA_872|Name=jgi.p|Nanoce1779_2|574461|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp|location=Sequence derived from alignment at scaffold_2:633559..635665+ (Nannochloropsis oceanica)
ACAGAATCCTCTCTCCGCTCCTCACCATGTCTGGTGTTCTGGGCGAGAAC
TGCCACGGCAAGGGCGGCGTGCGACTCCTTAAGGTTAGTGTCGTGTTGCT
GACACAGCAGGGTGGGAAAGGCCGCTCACATGGAGCACAGACAGGGATGA
ATCGGTAACTTAGTGCCATCATTCAATCTTTTTTTAGGCATATTTTCACT
TCGATTGTCCATGATAGTCATAAAACGAAGCCGTCAACCTGTTTCTTCCT
TGCCCTTCTTCCTACACAGCTCCACCGCTCCGGCGACCGCCACGACTTCA
TCCAGCTCACGGCCCAAGTCCTTCTGACAGTACGTGCCTTAACGTGAATC
TTTGTGATCTTTAACTGTCATTGTCATGCATAGTCGGGGCATTGATACAA
CTTCCCTTTTTCCTTGCACTATGATGTCGACCCTTGTCCCTGACACACAT
TTCTCCTTCTCTTATACCTTTTTTTCTTCTCCAAAAACAGGGTGGCTGTG
AAGACGCCTTCATCAAGGCTGATAACCGGAACATCGTCGCGACGGATACG
TGCAAAAACACCATCTACGTTCTAGCCCGTCGACACCACTTTGCCTCGAT
CGAAGAGTTTGGAATCATCGTTGCCAAGCACTTCCTTGCTCAATACCCGA
ATATCGTTTACAAGGCGGACATTCAGCTCGTCAAGGACCTGTGGACCCGC
GTGGTGAATAAGGATTCTCACGGTCGGATAGCTCAGCACAACCACGCCTT
TGTAAAGGTTGGTCCTCAGAATACCTACACGCAGTAAGTGAAGAAAAGGG
GGGGGGGGGGGGATGGGATGGGGGCTGTGGTTGGAAGAAAACGTGTTAAA
GAATAGCGGCCGTTTATTGGTGGTTTTCTGCCTTGACATATTCTTTTCTC
CCATTCATACGCGCAGCGTAACAGCGGAAAAAGTGGGTGGCTCCGTCAAC
GTCTCCGTCCGTTCAGGTACATACATTCTACTCCCGATGTCGTGTTTTTT
TCATCCCCTCACTCCCCCCCACCTCATCGTCACCTCATCATCACCATCAC
AAACAGGCGTTCGGTCCTTGATTCTCCTCAAGACGACTCAGTCTGGGTTC
GAGAACTTTCACCGGGACGAATTCAGGGCATTGGGCGACACGAACGATCG
CCTTGTTGGCACCTCCATCGACGGCGAATGGACGTTCACCCCTACTGCAA
TTGCCTCCAGTCCGGATTATGAGATGCTTAACAAGCTGGTGGTAGATACC
CTGATTGATGAATTTGCAGGACCTGCGGATAAGGGCGTGTATAGCGTCTC
GGTCCAGCAGACGCTTTATGACATGGGCACGGGCTTGCTGGCGAAGGTGC
CGGGGGTGGATAAAATTGAACTCTACATGGTGCGTTTTCTTCCTCCCATC
CTTTTATTCACAGTCCATTTCTATCGAGTGTACTGACTGAGTGCCCCATT
TCCATTCTTTTGAAAAATATCAATTGCTTCTTACCTTTCTCCTTCTCTCC
CTCTCTCTCAATTCACCCAGCCCAACATCCACAACATCCCCGTGGATCTG
TCCAAGTTCAAGATGGAAAACAAGGACCATACGGGCAAGCCCGACATTTT
CCTGCCTACCAGCGACCCGCACGGGATGATCAAAGCTGTGATCGAGCGAC
CTCGCAGCGCCCGCCTTTAAAATGACGTGTTGAATAAAGAGTGGAGGTCA
GAGATCTTTGCGGTGTGATAAAATAAGTGGCTGTGCCCATGGGGTGTGCC
TGCCTGTGTTCGTTTACGTTAAAGAGGCGAGAGCGCGAGACAGCGAATGA
GAAGGACAATGAAGGAAAGAAGGAGAAAAAGTCTGACAGCTAAAAGACGA
CGAATGGAAATATAGAAAGGACCTAGGAGGAGGACTAGCAGGGAACAGTT
TGGGAAGGGCCGAATCAGGCCCACTTTCAGGCTCAGGTCCCATTTTCTTC
AACTAAATATATGCTGAGCTAAGGTGCAGAATTGTGACAGGACGGAGACG
CAAACGTGCGCATACGCACATACACGCACAAACCTTAAAAGTCCAAAACC
GATTGACTGGAAGTAACCCCACCCCCCGCAAAAAAAAAACGAAAACACTC
AGAGACA

Coding sequence (CDS) from alignment at scaffold_2:633559..635665+

>mRNA_872 ID=mRNA_872|Name=jgi.p|Nanoce1779_2|574461|organism=Nannochloropsis oceanica|type=CDS|length=5598bp|location=Sequence derived from alignment at scaffold_2:633559..635665+ (Nannochloropsis oceanica)
ATGTCTGGTGTTCTGGGCGAGAACTGCCACGGCAAGGGCGGCGTGCGACT
CCTTAAGCTCCACCGCTCCGGCGACCGCCACGACTTCATCCAGCTCACGG
CCCAAGTCCTTCTGACAGGTGGCTGTGAAGACGCCTTCATCAAGGCTGAT
AACCGGAACATCGTCGCGACGGATACGTGCAAAAACACCATCTACGTTCT
AGCCCGTCGACACCACTTTGCCTCGATCGAAGAGTTTGGAATCATCGTTG
CCAAGCACTTCCTTGCTCAATACCCGAATATCGTTTACAAGGCGGACATT
CAGCTCGTCAAGGACCTGTGGACCCGCGTGGTGAATAAGGATTCTCACGG
TCGGATAGCTCAGCACAACCACGCCTTTGTAAAGGTTGGTCCTCAGAATA
CCTACACGCACGTAACAGCGGAAAAAGTGGGTGGCTCCGTCAACGTCTCC
GTCCGTTCAGGCGTTCGGTCCTTGATTCTCCTCAAGACGACTCAGTCTGG
GTTCGAGAACTTTCACCGGGACGAATTCAGGGCATTGGGCGACACGAACG
ATCGCCTTGTTGGCACCTCCATCGACGGCGAATGGACGTTCACCCCTACT
GCAATTGCCTCCAGTCCGGATTATGAGATGCTTAACAAGCTGGTGGTAGA
TACCCTGATTGATGAATTTGCAGGACCTGCGGATAAGGGCGTGTATAGCG
TCTCGGTCCAGCAGACGCTTTATGACATGGGCACGGGCTTGCTGGCGAAG
GTGCCGGGGGTGGATAAAATTGAACTCTACATGCCCAACATCCACAACAT
CCCCGTGGATCTGTCCAAGTTCAAGATGGAAAACAAGGACCATACGGGCA
AGCCCGACATTTTCCTGCCTACCAGCGACCCGCACGGGATGATCAAAGCT
GTGATCGAGCGACCTCGCAGCGCCCGCCTTTAAATGTCTGGTGTTCTGGG
CGAGAACTGCCACGGCAAGGGCGGCGTGCGACTCCTTAAGCTCCACCGCT
CCGGCGACCGCCACGACTTCATCCAGCTCACGGCCCAAGTCCTTCTGACA
GGTGGCTGTGAAGACGCCTTCATCAAGGCTGATAACCGGAACATCGTCGC
GACGGATACGTGCAAAAACACCATCTACGTTCTAGCCCGTCGACACCACT
TTGCCTCGATCGAAGAGTTTGGAATCATCGTTGCCAAGCACTTCCTTGCT
CAATACCCGAATATCGTTTACAAGGCGGACATTCAGCTCGTCAAGGACCT
GTGGACCCGCGTGGTGAATAAGGATTCTCACGGTCGGATAGCTCAGCACA
ACCACGCCTTTGTAAAGGTTGGTCCTCAGAATACCTACACGCACGTAACA
GCGGAAAAAGTGGGTGGCTCCGTCAACGTCTCCGTCCGTTCAGGCGTTCG
GTCCTTGATTCTCCTCAAGACGACTCAGTCTGGGTTCGAGAACTTTCACC
GGGACGAATTCAGGGCATTGGGCGACACGAACGATCGCCTTGTTGGCACC
TCCATCGACGGCGAATGGACGTTCACCCCTACTGCAATTGCCTCCAGTCC
GGATTATGAGATGCTTAACAAGCTGGTGGTAGATACCCTGATTGATGAAT
TTGCAGGACCTGCGGATAAGGGCGTGTATAGCGTCTCGGTCCAGCAGACG
CTTTATGACATGGGCACGGGCTTGCTGGCGAAGGTGCCGGGGGTGGATAA
AATTGAACTCTACATGCCCAACATCCACAACATCCCCGTGGATCTGTCCA
AGTTCAAGATGGAAAACAAGGACCATACGGGCAAGCCCGACATTTTCCTG
CCTACCAGCGACCCGCACGGGATGATCAAAGCTGTGATCGAGCGACCTCG
CAGCGCCCGCCTTTAAATGTCTGGTGTTCTGGGCGAGAACTGCCACGGCA
AGGGCGGCGTGCGACTCCTTAAGCTCCACCGCTCCGGCGACCGCCACGAC
TTCATCCAGCTCACGGCCCAAGTCCTTCTGACAGGTGGCTGTGAAGACGC
CTTCATCAAGGCTGATAACCGGAACATCGTCGCGACGGATACGTGCAAAA
ACACCATCTACGTTCTAGCCCGTCGACACCACTTTGCCTCGATCGAAGAG
TTTGGAATCATCGTTGCCAAGCACTTCCTTGCTCAATACCCGAATATCGT
TTACAAGGCGGACATTCAGCTCGTCAAGGACCTGTGGACCCGCGTGGTGA
ATAAGGATTCTCACGGTCGGATAGCTCAGCACAACCACGCCTTTGTAAAG
GTTGGTCCTCAGAATACCTACACGCACGTAACAGCGGAAAAAGTGGGTGG
CTCCGTCAACGTCTCCGTCCGTTCAGGCGTTCGGTCCTTGATTCTCCTCA
AGACGACTCAGTCTGGGTTCGAGAACTTTCACCGGGACGAATTCAGGGCA
TTGGGCGACACGAACGATCGCCTTGTTGGCACCTCCATCGACGGCGAATG
GACGTTCACCCCTACTGCAATTGCCTCCAGTCCGGATTATGAGATGCTTA
ACAAGCTGGTGGTAGATACCCTGATTGATGAATTTGCAGGACCTGCGGAT
AAGGGCGTGTATAGCGTCTCGGTCCAGCAGACGCTTTATGACATGGGCAC
GGGCTTGCTGGCGAAGGTGCCGGGGGTGGATAAAATTGAACTCTACATGC
CCAACATCCACAACATCCCCGTGGATCTGTCCAAGTTCAAGATGGAAAAC
AAGGACCATACGGGCAAGCCCGACATTTTCCTGCCTACCAGCGACCCGCA
CGGGATGATCAAAGCTGTGATCGAGCGACCTCGCAGCGCCCGCCTTTAAA
TGTCTGGTGTTCTGGGCGAGAACTGCCACGGCAAGGGCGGCGTGCGACTC
CTTAAGCTCCACCGCTCCGGCGACCGCCACGACTTCATCCAGCTCACGGC
CCAAGTCCTTCTGACAGGTGGCTGTGAAGACGCCTTCATCAAGGCTGATA
ACCGGAACATCGTCGCGACGGATACGTGCAAAAACACCATCTACGTTCTA
GCCCGTCGACACCACTTTGCCTCGATCGAAGAGTTTGGAATCATCGTTGC
CAAGCACTTCCTTGCTCAATACCCGAATATCGTTTACAAGGCGGACATTC
AGCTCGTCAAGGACCTGTGGACCCGCGTGGTGAATAAGGATTCTCACGGT
CGGATAGCTCAGCACAACCACGCCTTTGTAAAGGTTGGTCCTCAGAATAC
CTACACGCACGTAACAGCGGAAAAAGTGGGTGGCTCCGTCAACGTCTCCG
TCCGTTCAGGCGTTCGGTCCTTGATTCTCCTCAAGACGACTCAGTCTGGG
TTCGAGAACTTTCACCGGGACGAATTCAGGGCATTGGGCGACACGAACGA
TCGCCTTGTTGGCACCTCCATCGACGGCGAATGGACGTTCACCCCTACTG
CAATTGCCTCCAGTCCGGATTATGAGATGCTTAACAAGCTGGTGGTAGAT
ACCCTGATTGATGAATTTGCAGGACCTGCGGATAAGGGCGTGTATAGCGT
CTCGGTCCAGCAGACGCTTTATGACATGGGCACGGGCTTGCTGGCGAAGG
TGCCGGGGGTGGATAAAATTGAACTCTACATGCCCAACATCCACAACATC
CCCGTGGATCTGTCCAAGTTCAAGATGGAAAACAAGGACCATACGGGCAA
GCCCGACATTTTCCTGCCTACCAGCGACCCGCACGGGATGATCAAAGCTG
TGATCGAGCGACCTCGCAGCGCCCGCCTTTAAATGTCTGGTGTTCTGGGC
GAGAACTGCCACGGCAAGGGCGGCGTGCGACTCCTTAAGCTCCACCGCTC
CGGCGACCGCCACGACTTCATCCAGCTCACGGCCCAAGTCCTTCTGACAG
GTGGCTGTGAAGACGCCTTCATCAAGGCTGATAACCGGAACATCGTCGCG
ACGGATACGTGCAAAAACACCATCTACGTTCTAGCCCGTCGACACCACTT
TGCCTCGATCGAAGAGTTTGGAATCATCGTTGCCAAGCACTTCCTTGCTC
AATACCCGAATATCGTTTACAAGGCGGACATTCAGCTCGTCAAGGACCTG
TGGACCCGCGTGGTGAATAAGGATTCTCACGGTCGGATAGCTCAGCACAA
CCACGCCTTTGTAAAGGTTGGTCCTCAGAATACCTACACGCACGTAACAG
CGGAAAAAGTGGGTGGCTCCGTCAACGTCTCCGTCCGTTCAGGCGTTCGG
TCCTTGATTCTCCTCAAGACGACTCAGTCTGGGTTCGAGAACTTTCACCG
GGACGAATTCAGGGCATTGGGCGACACGAACGATCGCCTTGTTGGCACCT
CCATCGACGGCGAATGGACGTTCACCCCTACTGCAATTGCCTCCAGTCCG
GATTATGAGATGCTTAACAAGCTGGTGGTAGATACCCTGATTGATGAATT
TGCAGGACCTGCGGATAAGGGCGTGTATAGCGTCTCGGTCCAGCAGACGC
TTTATGACATGGGCACGGGCTTGCTGGCGAAGGTGCCGGGGGTGGATAAA
ATTGAACTCTACATGCCCAACATCCACAACATCCCCGTGGATCTGTCCAA
GTTCAAGATGGAAAACAAGGACCATACGGGCAAGCCCGACATTTTCCTGC
CTACCAGCGACCCGCACGGGATGATCAAAGCTGTGATCGAGCGACCTCGC
AGCGCCCGCCTTTAAATGTCTGGTGTTCTGGGCGAGAACTGCCACGGCAA
GGGCGGCGTGCGACTCCTTAAGCTCCACCGCTCCGGCGACCGCCACGACT
TCATCCAGCTCACGGCCCAAGTCCTTCTGACAGGTGGCTGTGAAGACGCC
TTCATCAAGGCTGATAACCGGAACATCGTCGCGACGGATACGTGCAAAAA
CACCATCTACGTTCTAGCCCGTCGACACCACTTTGCCTCGATCGAAGAGT
TTGGAATCATCGTTGCCAAGCACTTCCTTGCTCAATACCCGAATATCGTT
TACAAGGCGGACATTCAGCTCGTCAAGGACCTGTGGACCCGCGTGGTGAA
TAAGGATTCTCACGGTCGGATAGCTCAGCACAACCACGCCTTTGTAAAGG
TTGGTCCTCAGAATACCTACACGCACGTAACAGCGGAAAAAGTGGGTGGC
TCCGTCAACGTCTCCGTCCGTTCAGGCGTTCGGTCCTTGATTCTCCTCAA
GACGACTCAGTCTGGGTTCGAGAACTTTCACCGGGACGAATTCAGGGCAT
TGGGCGACACGAACGATCGCCTTGTTGGCACCTCCATCGACGGCGAATGG
ACGTTCACCCCTACTGCAATTGCCTCCAGTCCGGATTATGAGATGCTTAA
CAAGCTGGTGGTAGATACCCTGATTGATGAATTTGCAGGACCTGCGGATA
AGGGCGTGTATAGCGTCTCGGTCCAGCAGACGCTTTATGACATGGGCACG
GGCTTGCTGGCGAAGGTGCCGGGGGTGGATAAAATTGAACTCTACATGCC
CAACATCCACAACATCCCCGTGGATCTGTCCAAGTTCAAGATGGAAAACA
AGGACCATACGGGCAAGCCCGACATTTTCCTGCCTACCAGCGACCCGCAC
GGGATGATCAAAGCTGTGATCGAGCGACCTCGCAGCGCCCGCCTTTAA

Synonyms

Publications