jgi.p|Nanoce1779_2|568762, mRNA_8719 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568762
Unique NamemRNA_8719
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length402
Alignment locationscaffold_27:253215..253616 +

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Properties
Property NameValue
TranscriptId568848
TrackFilteredModels2
ProteinId568762
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:253215..253616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568762gene_8719Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568762mRNA_8719-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8719CDS_8719Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8719 ID=mRNA_8719|Name=jgi.p|Nanoce1779_2|568762|organism=Nannochloropsis oceanica|type=mRNA|length=402bp
ATGCAATGTGTAAAGTGTTGTCTGTCCAAGCGACTGGCGCCAGGTTGGCA
TCCGACAGTGAAAACTGTCCTGCTAGAAACCCTGGAGCGACAGATTCGGA
GCACGTCCGAGATTGTCGTACGAGGATCACTCCTGGTGAATGAGGTTTTG
CATTGGTACCTCAGTCGTCCAGTCGAGGAACAGGTGGCTCTTCCGAAGCT
GGATCAGAGCTTCGTCACCGCCTGCTTCGCTCGTGGGCTGGAGGTTCGAC
CCGGCCGAGCGTGGAACGAGGGATACCGCAGGGTCATCGAGGAGGTGTTT
CAGGATAAATTTACCAATTATCCGTTCATCCACCGTAGCCCGGGCGACTA
CCAATGCATCACCATGGCGGCACAGCTATACATCACAAATATAGCAGCGT
AG
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protein sequence of jgi.p|Nanoce1779_2|568762

>mRNA_8719-protein ID=mRNA_8719-protein|Name=jgi.p|Nanoce1779_2|568762|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MQCVKCCLSKRLAPGWHPTVKTVLLETLERQIRSTSEIVVRGSLLVNEVL
HWYLSRPVEEQVALPKLDQSFVTACFARGLEVRPGRAWNEGYRRVIEEVF
QDKFTNYPFIHRSPGDYQCITMAAQLYITNIAA*
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mRNA from alignment at scaffold_27:253215..253616+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8719 ID=mRNA_8719|Name=jgi.p|Nanoce1779_2|568762|organism=Nannochloropsis oceanica|type=mRNA|length=402bp|location=Sequence derived from alignment at scaffold_27:253215..253616+ (Nannochloropsis oceanica)
ATGCAATGTGTAAAGTGTTGTCTGTCCAAGCGACTGGCGCCAGGTTGGCA
TCCGACAGTGAAAACTGTCCTGCTAGAAACCCTGGAGCGACAGATTCGGA
GCACGTCCGAGATTGTCGTACGAGGATCACTCCTGGTGAATGAGGTTTTG
CATTGGTACCTCAGTCGTCCAGTCGAGGAACAGGTGGCTCTTCCGAAGCT
GGATCAGAGCTTCGTCACCGCCTGCTTCGCTCGTGGGCTGGAGGTTCGAC
CCGGCCGAGCGTGGAACGAGGGATACCGCAGGGTCATCGAGGAGGTGTTT
CAGGATAAATTTACCAATTATCCGTTCATCCACCGTAGCCCGGGCGACTA
CCAATGCATCACCATGGCGGCACAGCTATACATCACAAATATAGCAGCGT
AG
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Coding sequence (CDS) from alignment at scaffold_27:253215..253616+

>mRNA_8719 ID=mRNA_8719|Name=jgi.p|Nanoce1779_2|568762|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_27:253215..253616+ (Nannochloropsis oceanica)
ATGCAATGTGTAAAGTGTTGTCTGTCCAAGCGACTGGCGCCAGGTTGGCA
TCCGACAGTGAAAACTGTCCTGCTAGAAACCCTGGAGCGACAGATTCGGA
GCACGTCCGAGATTGTCGTACGAGGATCACTCCTGGTGAATGAGGTTTTG
CATTGGTACCTCAGTCGTCCAGTCGAGGAACAGGTGGCTCTTCCGAAGCT
GGATCAGAGCTTCGTCACCGCCTGCTTCGCTCGTGGGCTGGAGGTTCGAC
CCGGCCGAGCGTGGAACGAGGGATACCGCAGGGTCATCGAGGAGGTGTTT
CAGGATAAATTTACCAATTATCCGTTCATCCACCGTAGCCCGGGCGACTA
CCAATGCATCACCATGGCGGCACAGCTATACATCACAAATATAGCAGCGT
AG
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Synonyms
Publications