jgi.p|Nanoce1779_2|603715, mRNA_8718 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603715
Unique NamemRNA_8718
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length409
Alignment locationscaffold_27:250456..250864 -

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Properties
Property NameValue
TranscriptId603801
TrackFilteredModels2
ProteinId603715
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:250456..250864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603715gene_8718Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603715mRNA_8718-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8718CDS_8718Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8718 ID=mRNA_8718|Name=jgi.p|Nanoce1779_2|603715|organism=Nannochloropsis oceanica|type=mRNA|length=409bp
TTAAAAGAAAACGACTTCGTGCTTATGCTTTGTAGGTGTCATTGGATTGC
TTTGCTGTTGTGTGTCGTCATGTTGTATGAAAGGAGCTGCCAAATATTTC
CCGTTAAGGGACCTAAAAAATTGTGCATACAGGCAAAGCGAAGAAGACTC
ATGAAGCTTATCACTCCGCAGGTCAAGACTTTGGATACTGGAGAATGCTA
TCCTTGCAGGCAGAAAAGACTCAATATTAACATAACAGGAAAACCAGGTC
TCACCGAGCCTTTCTGATTTCGAGGAAGATTTTGCCTCCCGTTCTCACTG
TACGTCATGTGCTTGTCGCTCCGGGTTAGTGAGGATATTTTTTTATTCGA
TGGCGGCGTGTGTGCGTGGATGCTTACACTACTATCTACCCCCCTCCCCT
CCCTCCCCC
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protein sequence of jgi.p|Nanoce1779_2|603715

>mRNA_8718-protein ID=mRNA_8718-protein|Name=jgi.p|Nanoce1779_2|603715|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MLCRCHWIALLLCVVMLYERSCQIFPVKGPKKLCIQAKRRRLMKLITPQV
KTLDTGECYPCRQKRLNINITGKPGLTEPF*
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mRNA from alignment at scaffold_27:250456..250864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8718 ID=mRNA_8718|Name=jgi.p|Nanoce1779_2|603715|organism=Nannochloropsis oceanica|type=mRNA|length=409bp|location=Sequence derived from alignment at scaffold_27:250456..250864- (Nannochloropsis oceanica)
TTAAAAGAAAACGACTTCGTGCTTATGCTTTGTAGGTGTCATTGGATTGC
TTTGCTGTTGTGTGTCGTCATGTTGTATGAAAGGAGCTGCCAAATATTTC
CCGTTAAGGGACCTAAAAAATTGTGCATACAGGCAAAGCGAAGAAGACTC
ATGAAGCTTATCACTCCGCAGGTCAAGACTTTGGATACTGGAGAATGCTA
TCCTTGCAGGCAGAAAAGACTCAATATTAACATAACAGGAAAACCAGGTC
TCACCGAGCCTTTCTGATTTCGAGGAAGATTTTGCCTCCCGTTCTCACTG
TACGTCATGTGCTTGTCGCTCCGGGTTAGTGAGGATATTTTTTTATTCGA
TGGCGGCGTGTGTGCGTGGATGCTTACACTACTATCTACCCCCCTCCCCT
CCCTCCCCC
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Coding sequence (CDS) from alignment at scaffold_27:250456..250864-

>mRNA_8718 ID=mRNA_8718|Name=jgi.p|Nanoce1779_2|603715|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_27:250456..250864- (Nannochloropsis oceanica)
ATGCTTTGTAGGTGTCATTGGATTGCTTTGCTGTTGTGTGTCGTCATGTT
GTATGAAAGGAGCTGCCAAATATTTCCCGTTAAGGGACCTAAAAAATTGT
GCATACAGGCAAAGCGAAGAAGACTCATGAAGCTTATCACTCCGCAGGTC
AAGACTTTGGATACTGGAGAATGCTATCCTTGCAGGCAGAAAAGACTCAA
TATTAACATAACAGGAAAACCAGGTCTCACCGAGCCTTTCTGA
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Synonyms
Publications