jgi.p|Nanoce1779_2|216097, mRNA_8717 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|216097
Unique Name	mRNA_8717
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	967
Alignment location	scaffold_27:248917..249883 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	216183
Track	FilteredModels2
ProteinId	216097

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:248917..249883 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|216097	gene_8717	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|216097	mRNA_8717-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8717	CDS_8717	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:248917..249883+
coding sequence from alignment at scaffold_27:248917..249883+

mRNA sequence

>mRNA_8717 ID=mRNA_8717|Name=jgi.p|Nanoce1779_2|216097|organism=Nannochloropsis oceanica|type=mRNA|length=967bp
AAATGGTCTATTTATTTATGTGGATAGATGGTGGTGGCGTATGACGAGAT
GGAGCGGGGCGAAGTCCCAATCTACGTGCTCCTTGCCTCCTCATCTCACT
TTTCCCCTCCAGCCCTCTCTCCTTCTGTGTTGCCCCTCAATCCAACGAGC
ACAGAAGCAACTACTCCTACTGCCGCCTCCTCGCCTCCCTTGGTTCTCTC
TTCCTTCTCCCTCTCCTTCCTCCCTAAGCCCCCCCCCTTCCTCGGTGTTA
TATCCCCGCATCGCAGCGAGAAGGACAGCCGCCTCATCGTCCACCTCATC
ATCCCTCCCACGTTTGCCGCCGTGCTCCGAAGCTCCGTCTTCCGGCGGGT
GGTGTGATTTGACCCTCTTCTTTTGTCGCCTCGTTTTCCTCTCTTTCCTC
CTCCTCTTTGTCCCGCGTCGTTCTTTAAACACGTACGGGACGTCCTCCCT
GATCTCTCCCTCCTCCAGCTCTTCCTCCTCTTCCTCCACTGCACCCTCCC
TCTCCTCTCCCTCGTCGCTCGGTTCACCTCCGTCTCCTCCCACTGCGATT
CCATCAGCGGCTTCCAGCCTTGCCTCACACATTTTTCCCACCTCCTCGTA
CTCCACGTCTTCCTCCCCTCGTTGCCCTAGTTCTCCTCGTCGTCCTCTCC
ATCTTCCAGAACCTTTGTAGCCTGGCACTATGAGAGATACAGAGCGGGTG
TTATTGAACGACGTCGTCCGCGCTCCTTGCTCTTGTCCCCCCTCTTCTCG
AAGTCGTTCCTGAGCTCCCCCTCCTCTAGCTCTTCCTCCTCTTCCTCCAC
CGCACCCTCCCTCTCCTCATATTGTGTATATAATTTTGTAGTATGTCTGT
ACTAGTCTAATTAACCAGAAATAAGAGATACATAATTCCATGGGTGTATG
TATGTATGTTTATAAGTGTCATGCAAAACAAAGGGCACAAATGAAGAAAT
CAAGATCAGGTTGCTAG

protein sequence of jgi.p|Nanoce1779_2|216097

>mRNA_8717-protein ID=mRNA_8717-protein|Name=jgi.p|Nanoce1779_2|216097|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MTRWSGAKSQSTCSLPPHLTFPLQPSLLLCCPSIQRAQKQLLLLPPPRLP
WFSLPSPSPSSLSPPPSSVLYPRIAARRTAASSSTSSSLPRLPPCSEAPS
SGGWCDLTLFFCRLVFLSFLLLFVPRRSLNTYGTSSLISPSSSSSSSSST
APSLSSPSSLGSPPSPPTAIPSAASSLASHIFPTSSYSTSSSPRCPSSPR
RPLHLPEPL*

mRNA from alignment at scaffold_27:248917..249883+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8717 ID=mRNA_8717|Name=jgi.p|Nanoce1779_2|216097|organism=Nannochloropsis oceanica|type=mRNA|length=967bp|location=Sequence derived from alignment at scaffold_27:248917..249883+ (Nannochloropsis oceanica)
AAATGGTCTATTTATTTATGTGGATAGATGGTGGTGGCGTATGACGAGAT
GGAGCGGGGCGAAGTCCCAATCTACGTGCTCCTTGCCTCCTCATCTCACT
TTTCCCCTCCAGCCCTCTCTCCTTCTGTGTTGCCCCTCAATCCAACGAGC
ACAGAAGCAACTACTCCTACTGCCGCCTCCTCGCCTCCCTTGGTTCTCTC
TTCCTTCTCCCTCTCCTTCCTCCCTAAGCCCCCCCCCTTCCTCGGTGTTA
TATCCCCGCATCGCAGCGAGAAGGACAGCCGCCTCATCGTCCACCTCATC
ATCCCTCCCACGTTTGCCGCCGTGCTCCGAAGCTCCGTCTTCCGGCGGGT
GGTGTGATTTGACCCTCTTCTTTTGTCGCCTCGTTTTCCTCTCTTTCCTC
CTCCTCTTTGTCCCGCGTCGTTCTTTAAACACGTACGGGACGTCCTCCCT
GATCTCTCCCTCCTCCAGCTCTTCCTCCTCTTCCTCCACTGCACCCTCCC
TCTCCTCTCCCTCGTCGCTCGGTTCACCTCCGTCTCCTCCCACTGCGATT
CCATCAGCGGCTTCCAGCCTTGCCTCACACATTTTTCCCACCTCCTCGTA
CTCCACGTCTTCCTCCCCTCGTTGCCCTAGTTCTCCTCGTCGTCCTCTCC
ATCTTCCAGAACCTTTGTAGCCTGGCACTATGAGAGATACAGAGCGGGTG
TTATTGAACGACGTCGTCCGCGCTCCTTGCTCTTGTCCCCCCTCTTCTCG
AAGTCGTTCCTGAGCTCCCCCTCCTCTAGCTCTTCCTCCTCTTCCTCCAC
CGCACCCTCCCTCTCCTCATATTGTGTATATAATTTTGTAGTATGTCTGT
ACTAGTCTAATTAACCAGAAATAAGAGATACATAATTCCATGGGTGTATG
TATGTATGTTTATAAGTGTCATGCAAAACAAAGGGCACAAATGAAGAAAT
CAAGATCAGGTTGCTAG

Coding sequence (CDS) from alignment at scaffold_27:248917..249883+

>mRNA_8717 ID=mRNA_8717|Name=jgi.p|Nanoce1779_2|216097|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_27:248917..249883+ (Nannochloropsis oceanica)
ATGACGAGATGGAGCGGGGCGAAGTCCCAATCTACGTGCTCCTTGCCTCC
TCATCTCACTTTTCCCCTCCAGCCCTCTCTCCTTCTGTGTTGCCCCTCAA
TCCAACGAGCACAGAAGCAACTACTCCTACTGCCGCCTCCTCGCCTCCCT
TGGTTCTCTCTTCCTTCTCCCTCTCCTTCCTCCCTAAGCCCCCCCCCTTC
CTCGGTGTTATATCCCCGCATCGCAGCGAGAAGGACAGCCGCCTCATCGT
CCACCTCATCATCCCTCCCACGTTTGCCGCCGTGCTCCGAAGCTCCGTCT
TCCGGCGGGTGGTGTGATTTGACCCTCTTCTTTTGTCGCCTCGTTTTCCT
CTCTTTCCTCCTCCTCTTTGTCCCGCGTCGTTCTTTAAACACGTACGGGA
CGTCCTCCCTGATCTCTCCCTCCTCCAGCTCTTCCTCCTCTTCCTCCACT
GCACCCTCCCTCTCCTCTCCCTCGTCGCTCGGTTCACCTCCGTCTCCTCC
CACTGCGATTCCATCAGCGGCTTCCAGCCTTGCCTCACACATTTTTCCCA
CCTCCTCGTACTCCACGTCTTCCTCCCCTCGTTGCCCTAGTTCTCCTCGT
CGTCCTCTCCATCTTCCAGAACCTTTGTAG

Synonyms

Publications