jgi.p|Nanoce1779_2|216128, mRNA_8716 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|216128
Unique NamemRNA_8716
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length633
Alignment locationscaffold_27:248282..248914 +

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Properties
Property NameValue
TranscriptId216214
TrackFilteredModels2
ProteinId216128
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:248282..248914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|216128gene_8716Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|216128mRNA_8716-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8716CDS_8716Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8716 ID=mRNA_8716|Name=jgi.p|Nanoce1779_2|216128|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
GGTCCCTCCTTCCGCTTACGTGTCTGGTGACGAGGCGGGGGGGGGGTGAT
GGACATCTCGCTCTTAGTGATTGGGACGAGGGGGAGGAAGACGTGGAGTA
CGAGGAGGTGGGAAAAATGTGTGAGGCAAGGCTGGAAGCCGCTGATGGAA
GCGCAGTGGGAGGAGACGGAGGTGAACCGAGCGACGAGGGAGAGGAGAGG
GAGGGTGCAGTGGAGGAAGAGGAGGAAGAGCTGGAGGAGGGAGAGATCAG
GGAGGACGTCCCGTACGTGTTTAAAGAACGACGCGGGACAAAGAGGAGGA
GGAAAGAGAGGAAAACGAGGCGACAAAAGAAGAGGGTCAAATCACACCAC
CCGCCGGAAGACGGAGCTTCGGAGCACGGCGGCAAACGTGGGAGGGATGA
TGAGGTGGACGATGAGGCGGCTGTCCTTCTCGCTGCGATGCGGGGATATA
ACACCGAGGAAGGGGGGGGCTTAGGGAGGAAGGAGAGGGAGAAGGAAGAG
AGAACTAAGGGAGGCGAGGAGGCGGCAGTAGGAGTAGTTGCTTCTGTGCT
CGTTGGATTGAGGGGCAACACAGAAGGAGAGAGGGCTGGAGGGGAAAAGT
GAGATGAGGAGGCAAGGAGCACGTAGATTGGGA
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protein sequence of jgi.p|Nanoce1779_2|216128

>mRNA_8716-protein ID=mRNA_8716-protein|Name=jgi.p|Nanoce1779_2|216128|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MCEARLEAADGSAVGGDGGEPSDEGEEREGAVEEEEEELEEGEIREDVPY
VFKERRGTKRRRKERKTRRQKKRVKSHHPPEDGASEHGGKRGRDDEVDDE
AAVLLAAMRGYNTEEGGGLGRKEREKEERTKGGEEAAVGVVASVLVGLRG
NTEGERAGGEK*
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mRNA from alignment at scaffold_27:248282..248914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8716 ID=mRNA_8716|Name=jgi.p|Nanoce1779_2|216128|organism=Nannochloropsis oceanica|type=mRNA|length=633bp|location=Sequence derived from alignment at scaffold_27:248282..248914+ (Nannochloropsis oceanica)
GGTCCCTCCTTCCGCTTACGTGTCTGGTGACGAGGCGGGGGGGGGGTGAT
GGACATCTCGCTCTTAGTGATTGGGACGAGGGGGAGGAAGACGTGGAGTA
CGAGGAGGTGGGAAAAATGTGTGAGGCAAGGCTGGAAGCCGCTGATGGAA
GCGCAGTGGGAGGAGACGGAGGTGAACCGAGCGACGAGGGAGAGGAGAGG
GAGGGTGCAGTGGAGGAAGAGGAGGAAGAGCTGGAGGAGGGAGAGATCAG
GGAGGACGTCCCGTACGTGTTTAAAGAACGACGCGGGACAAAGAGGAGGA
GGAAAGAGAGGAAAACGAGGCGACAAAAGAAGAGGGTCAAATCACACCAC
CCGCCGGAAGACGGAGCTTCGGAGCACGGCGGCAAACGTGGGAGGGATGA
TGAGGTGGACGATGAGGCGGCTGTCCTTCTCGCTGCGATGCGGGGATATA
ACACCGAGGAAGGGGGGGGCTTAGGGAGGAAGGAGAGGGAGAAGGAAGAG
AGAACTAAGGGAGGCGAGGAGGCGGCAGTAGGAGTAGTTGCTTCTGTGCT
CGTTGGATTGAGGGGCAACACAGAAGGAGAGAGGGCTGGAGGGGAAAAGT
GAGATGAGGAGGCAAGGAGCACGTAGATTGGGA
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Coding sequence (CDS) from alignment at scaffold_27:248282..248914+

>mRNA_8716 ID=mRNA_8716|Name=jgi.p|Nanoce1779_2|216128|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_27:248282..248914+ (Nannochloropsis oceanica)
ATGTGTGAGGCAAGGCTGGAAGCCGCTGATGGAAGCGCAGTGGGAGGAGA
CGGAGGTGAACCGAGCGACGAGGGAGAGGAGAGGGAGGGTGCAGTGGAGG
AAGAGGAGGAAGAGCTGGAGGAGGGAGAGATCAGGGAGGACGTCCCGTAC
GTGTTTAAAGAACGACGCGGGACAAAGAGGAGGAGGAAAGAGAGGAAAAC
GAGGCGACAAAAGAAGAGGGTCAAATCACACCACCCGCCGGAAGACGGAG
CTTCGGAGCACGGCGGCAAACGTGGGAGGGATGATGAGGTGGACGATGAG
GCGGCTGTCCTTCTCGCTGCGATGCGGGGATATAACACCGAGGAAGGGGG
GGGCTTAGGGAGGAAGGAGAGGGAGAAGGAAGAGAGAACTAAGGGAGGCG
AGGAGGCGGCAGTAGGAGTAGTTGCTTCTGTGCTCGTTGGATTGAGGGGC
AACACAGAAGGAGAGAGGGCTGGAGGGGAAAAGTGA
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Synonyms
Publications