jgi.p|Nanoce1779_2|603707, mRNA_8714 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603707
Unique NamemRNA_8714
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length417
Alignment locationscaffold_27:243097..243513 +

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Properties
Property NameValue
TranscriptId603793
TrackFilteredModels2
ProteinId603707
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:243097..243513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603707gene_8714Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603707mRNA_8714-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8714CDS_8714Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8714 ID=mRNA_8714|Name=jgi.p|Nanoce1779_2|603707|organism=Nannochloropsis oceanica|type=mRNA|length=417bp
CTTTTGATCAGATCCTCGGTCATCTCCCATGAACCTCCGTTCTAGATATC
TCATACCATCTCCTTGGACACTCGCGGCTCCCTTTGACGGTAGAGAGGGG
TATGAGAGGGGAGGGGGGAGCAAGGGACGGACGCAGGCTGAATGAAGGGC
GAGGTGTCAACCCAATTGGTGCTTCTGAGCCTGAATATTTGGACTGAGCA
TGCATTTTGTGTCTTTAGTTGGTTTGCGAATAATGGAGTGCTTCCTATGT
TCTTTTGTTTAAATCATACACTCCTCCCTTCCTCTACTTCCCTCCTCTCT
CCACGAGACAGCTCGAAGGGATCCATGTGCCCCGGGCCCAAAGTAGTGGT
TAAAAGAATGAAAAATCATCATCCAACCCTCTGATTCCGTCTCTCTCGTC
CCTCTCCTTCCCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|603707

>mRNA_8714-protein ID=mRNA_8714-protein|Name=jgi.p|Nanoce1779_2|603707|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MKGEVSTQLVLLSLNIWTEHAFCVFSWFANNGVLPMFFCLNHTLLPSSTS
LLSPRDSSKGSMCPGPKVVVKRMKNHHPTL*
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mRNA from alignment at scaffold_27:243097..243513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8714 ID=mRNA_8714|Name=jgi.p|Nanoce1779_2|603707|organism=Nannochloropsis oceanica|type=mRNA|length=417bp|location=Sequence derived from alignment at scaffold_27:243097..243513+ (Nannochloropsis oceanica)
CTTTTGATCAGATCCTCGGTCATCTCCCATGAACCTCCGTTCTAGATATC
TCATACCATCTCCTTGGACACTCGCGGCTCCCTTTGACGGTAGAGAGGGG
TATGAGAGGGGAGGGGGGAGCAAGGGACGGACGCAGGCTGAATGAAGGGC
GAGGTGTCAACCCAATTGGTGCTTCTGAGCCTGAATATTTGGACTGAGCA
TGCATTTTGTGTCTTTAGTTGGTTTGCGAATAATGGAGTGCTTCCTATGT
TCTTTTGTTTAAATCATACACTCCTCCCTTCCTCTACTTCCCTCCTCTCT
CCACGAGACAGCTCGAAGGGATCCATGTGCCCCGGGCCCAAAGTAGTGGT
TAAAAGAATGAAAAATCATCATCCAACCCTCTGATTCCGTCTCTCTCGTC
CCTCTCCTTCCCTCCCT
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Coding sequence (CDS) from alignment at scaffold_27:243097..243513+

>mRNA_8714 ID=mRNA_8714|Name=jgi.p|Nanoce1779_2|603707|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_27:243097..243513+ (Nannochloropsis oceanica)
ATGAAGGGCGAGGTGTCAACCCAATTGGTGCTTCTGAGCCTGAATATTTG
GACTGAGCATGCATTTTGTGTCTTTAGTTGGTTTGCGAATAATGGAGTGC
TTCCTATGTTCTTTTGTTTAAATCATACACTCCTCCCTTCCTCTACTTCC
CTCCTCTCTCCACGAGACAGCTCGAAGGGATCCATGTGCCCCGGGCCCAA
AGTAGTGGTTAAAAGAATGAAAAATCATCATCCAACCCTCTGA
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Synonyms
Publications