jgi.p|Nanoce1779_2|673640, mRNA_8712 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673640
Unique Name	mRNA_8712
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1098
Alignment location	scaffold_27:238354..240511 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673726
Track	FilteredModels2
ProteinId	673640

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:238354..240511 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673640	gene_8712	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673640	mRNA_8712-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8712	CDS_8712	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:238354..240511+
coding sequence from alignment at scaffold_27:238354..240511+

mRNA sequence

>mRNA_8712 ID=mRNA_8712|Name=jgi.p|Nanoce1779_2|673640|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
GAAGATGTAATATAACCTACCCTAGAGGCTCAGCATGGCGGGTGTACATC
TAACACCAGGCCTCTCTTTTTCCACCTTAACTGCCCTTGATCTCTTTTCC
TTACTTCCACACAGTATTCCTTTTTTTTCCTTGCGGGCTATTGTATTCCT
CTCTCTTACTTTCATTGTCATATGCCCTTTCTTATCCTTTCGTGCTCTAT
CGCACATCGCCCACATATCTACAACTACCTATATCTTGCCGCGAGGAAAA
ATCTTTCTTGCTTCACAAGCAACCGGTACTTTATGCTTGCGCAACAACTG
GTGTATCGTCATCCAATCCCGCGTACTGCCTGCCACAAGGACTTACATCA
CTCTTGTAGTGGCGGAATGCAGGCCGGGGCTTTTAGTAATCCTTGTACCT
GTGTTACGGGCTATATCCCTTTGACTGAGGGTCCACAGGGGATCAGGGGG
ATCCATGTCCCCTCGAGCTTGACTGAGGATCCATACGGGGCGGCTCACAA
CCACCGAAGCAACAAGGCAAGGAACACCAGCATCAACGACAGCAGCAGCA
ACAACAGCATGTGCAACAGCAACAGCAAGATCCCTGGTAGAGGACCGCAG
CAGCAGCAGCAGTGGTCGTGGAAGGGAACAGATGTGGGGCTCCGGCGTGT
CTGCAACAACGAGCGTGCCTCATACCCCTTCACAGCTGCAATGAAGCCCC
TTCACTTCGACGGCACCGCTAGTCACATTCGAGCAAGCGTGGATCGAGGG
CGGTTTTTAGTAGAACGCAAATGGAGGATGCAGCTTAGTTTGTTCGGCAA
CATCTCTGCGTTCACTAAGCATGATGACGACCCAGCTCCCACGGCGGTCC
CACCATACACATTACAAGTACTTTTCAAGATGGGCCGGCGCGACAAACAC
CAGCGAATTGCCCTGGTGGTAGCGTCGGAGAAAGAAGAGCTAGAGGCGGG
CGTGTAAGCAAAGAAGCGCCTTGGTCCAGTGATCAGCTAAGCCGCCATGC
CCTACATATATGCTGCCGCATTCTTCCCGTGGTGTCGCGCTGCGCGTGAA
GATGACAAGGAAAGAGGAATTACAAGAGGCAAGTTAGATCTGTTGAAC

protein sequence of jgi.p|Nanoce1779_2|673640

>mRNA_8712-protein ID=mRNA_8712-protein|Name=jgi.p|Nanoce1779_2|673640|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MPFLILSCSIAHRPHIYNYLYLAARKNLSCFTSNRYFMLAQQLVYRHPIP
RTACHKDLHHSCSGGMQAGAFSNPCTCVTGYIPLTEGPQGIRGIHVPSSL
TEDPYGAAHNHRSNKARNTSINDSSSNNSMCNSNSKIPGRGPQQQQQWSW
KGTDVGLRRVCNNERASYPFTAAMKPLHFDGTASHIRASVDRGRFLVERK
WRMQLSLFGNISAFTKHDDDPAPTAVPPYTLQVLFKMGRRDKHQRIALVV
ASEKEELEAGV*

mRNA from alignment at scaffold_27:238354..240511+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8712 ID=mRNA_8712|Name=jgi.p|Nanoce1779_2|673640|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp|location=Sequence derived from alignment at scaffold_27:238354..240511+ (Nannochloropsis oceanica)
GAAGATGTAATATAACCTACCCTAGAGGCTCAGCATGGCGGGTGTACATC
TAACACCAGGCCTCTCTTTTTCCACCTTAACTGCCCTTGATCTCTTTTCC
TTACTTCCACACAGTATTCCTTTTTTTTCCTTGCGGGCTATTGTATTCCT
CTCTCTTACTTTCATTGTCATATGCCCTTTCTTATCCTTTCGTGCTCTAT
CGCACATCGCCCACATATCTACAACTACCTATATCTTGCCGCGAGGAAAA
ATCTTTCTTGCTTCACAAGCAACCGGTACTTTATGCTTGCGCAACAACTG
GTGTATCGTCATCCAATCCCGCGTACTGCCTGCCACAAGGACTTACATCA
CTCTTGTAGTGGCGGAATGCAGGCCGGGGCTTTTAGTAATCCTTGTACCT
GTGTTACGGGCTATATCCCTTTGACTGAGGGTCCACAGGGGATCAGGGGG
ATCCATGTCCCCTCGAGCTTGACTGAGGATCCATACGGGGTCCATGCATT
GTGCGGTTAGTGATATGAAAACGGGTGGTATCTGTGTGTGCGAGTATGCA
CGAGTTGTGCTCGGAAAAGACTAGTCGCATTTTCCGTTCTTTCGTGTGCA
TATCGGTGCCTTGCCTCTCCTTCTGTATATCAGATACTTTTATGATCGAT
CAATACATGGACGATAGGTAGACTCGTGGCCAGGTTTCTCCCACTTGTCG
CTTTAAGAGAAGCGAAATGGTCGGGCACATAAAAGGGCGCCAGGGTGAGG
AGGTTATCCCTTGTCTGATTCATTATACAATGCATCCTGTGTCAATCAAG
GCCCATGGAGTGAACATTTTCCTCAAATACGTCTCCTTTATTCTATTTTG
TCGAGTCTTCTGGGCTACCTGCATTTCACTTTGCCGTTCTTTCTTCCAAC
ATCCCCCTACACCCTTCCACTCACAGGCGGCTCACAACCACCGAAGCAAC
AAGGCAAGGAACACCAGCATCAACGACAGCAGCAGCAACAACAGCATGTG
CAACAGCAACAGCAAGATCCCTGGTAGAGGACCGCAGCAGCAGCAGCAGT
GGTCGTGGAAGGGAACAGATGTGGGGCTCCGGCGTGTCTGCAACAACGAG
CGTGCCTCATACCGTACGTGCCCGAGTTAAGGTCTCCATCGTTTACGTAT
CCCATCTTGGTCGAACAAACAAACCCCTCAGCATTCCTTGTCCGCACTTT
CATAAACTTAGGCCCACAAGTGGCAACATTTTCCTTTCTTGGCATTGTAG
ATGCTCTAGGAAGATGATGGCATGGTAGCTGGCGTTGAGGAGCGGAGAGA
AAAAAGAACTCGAGTAGCAGAAGCATCAACCTGACCATTCGCCACGTATG
ATCGGCGGCAGCGAAGCCACCAGCGACTTTGTTCATCGTTCAATGTCAAT
GGCTCTCTCTAAGCCTTTATGTTCGCCTCCTGCCTCTTCCTTACGCCATG
CTCCTCGTCTGTAGGTCCTCCTCTTTCCGATTCTCATATTTATCCTGAGC
CAAAACTCTTCTTCCCGCCACTTCGAAAATTTTTGAGATATCATATGGAC
CCAAGAGTATACCCAGGACTACGTTGCCGTTCTACAGCCTTCACAGCTGC
AATGAAGCCCCTTCACTTCGACGGCACCGCTAGTCACATTCGAGCAAGCG
TGGATCGAGGGCGGTTTTTAGTAGAACGCAAATGGAGGATGCAGCTTAGT
TTGGTAAGAATGATTTCTACGTTCTATGCCTTCCTGATATCGGAATGTAC
ATGTAAATTACACACGCATACAACTGCCACTTTCTAACCAAGCAGCTTTC
GACCTCCCCACGTATGTCCCCTGGTCACCTGGCCCCTCCTTCTCTCTTCG
AGTTCGGCAACATCTCTGCGTTCACTAAGCATGATGACGACCCAGCTCCC
ACGGCGGTCCCACCATACACATTACAAGTACTTTTCAAGATGGGCCGGCG
CGACAAACACCAGCGAATTGCCCTGGTGGTAGCGTCGGAGAAAGAAGAGC
TAGAGGCGGGCGTGTAAGCAAAGAAGCGCCTTGGTCCAGTGATCAGCTAA
GCCGCCATGCCCTACATATATGCTGCCGCATTCTTCCCGTGGTGTCGCGC
TGCGCGTGAAGATGACAAGGAAAGAGGAATTACAAGAGGCAAGTTAGATC
TGTTGAAC

Coding sequence (CDS) from alignment at scaffold_27:238354..240511+

>mRNA_8712 ID=mRNA_8712|Name=jgi.p|Nanoce1779_2|673640|organism=Nannochloropsis oceanica|type=CDS|length=3144bp|location=Sequence derived from alignment at scaffold_27:238354..240511+ (Nannochloropsis oceanica)
ATGCCCTTTCTTATCCTTTCGTGCTCTATCGCACATCGCCCACATATCTA
CAACTACCTATATCTTGCCGCGAGGAAAAATCTTTCTTGCTTCACAAGCA
ACCGGTACTTTATGCTTGCGCAACAACTGGTGTATCGTCATCCAATCCCG
CGTACTGCCTGCCACAAGGACTTACATCACTCTTGTAGTGGCGGAATGCA
GGCCGGGGCTTTTAGTAATCCTTGTACCTGTGTTACGGGCTATATCCCTT
TGACTGAGGGTCCACAGGGGATCAGGGGGATCCATGTCCCCTCGAGCTTG
ACTGAGGATCCATACGGGGCGGCTCACAACCACCGAAGCAACAAGGCAAG
GAACACCAGCATCAACGACAGCAGCAGCAACAACAGCATGTGCAACAGCA
ACAGCAAGATCCCTGGTAGAGGACCGCAGCAGCAGCAGCAGTGGTCGTGG
AAGGGAACAGATGTGGGGCTCCGGCGTGTCTGCAACAACGAGCGTGCCTC
ATACCCCTTCACAGCTGCAATGAAGCCCCTTCACTTCGACGGCACCGCTA
GTCACATTCGAGCAAGCGTGGATCGAGGGCGGTTTTTAGTAGAACGCAAA
TGGAGGATGCAGCTTAGTTTGTTCGGCAACATCTCTGCGTTCACTAAGCA
TGATGACGACCCAGCTCCCACGGCGGTCCCACCATACACATTACAAGTAC
TTTTCAAGATGGGCCGGCGCGACAAACACCAGCGAATTGCCCTGGTGGTA
GCGTCGGAGAAAGAAGAGCTAGAGGCGGGCGTGTAAATGCCCTTTCTTAT
CCTTTCGTGCTCTATCGCACATCGCCCACATATCTACAACTACCTATATC
TTGCCGCGAGGAAAAATCTTTCTTGCTTCACAAGCAACCGGTACTTTATG
CTTGCGCAACAACTGGTGTATCGTCATCCAATCCCGCGTACTGCCTGCCA
CAAGGACTTACATCACTCTTGTAGTGGCGGAATGCAGGCCGGGGCTTTTA
GTAATCCTTGTACCTGTGTTACGGGCTATATCCCTTTGACTGAGGGTCCA
CAGGGGATCAGGGGGATCCATGTCCCCTCGAGCTTGACTGAGGATCCATA
CGGGGCGGCTCACAACCACCGAAGCAACAAGGCAAGGAACACCAGCATCA
ACGACAGCAGCAGCAACAACAGCATGTGCAACAGCAACAGCAAGATCCCT
GGTAGAGGACCGCAGCAGCAGCAGCAGTGGTCGTGGAAGGGAACAGATGT
GGGGCTCCGGCGTGTCTGCAACAACGAGCGTGCCTCATACCCCTTCACAG
CTGCAATGAAGCCCCTTCACTTCGACGGCACCGCTAGTCACATTCGAGCA
AGCGTGGATCGAGGGCGGTTTTTAGTAGAACGCAAATGGAGGATGCAGCT
TAGTTTGTTCGGCAACATCTCTGCGTTCACTAAGCATGATGACGACCCAG
CTCCCACGGCGGTCCCACCATACACATTACAAGTACTTTTCAAGATGGGC
CGGCGCGACAAACACCAGCGAATTGCCCTGGTGGTAGCGTCGGAGAAAGA
AGAGCTAGAGGCGGGCGTGTAAATGCCCTTTCTTATCCTTTCGTGCTCTA
TCGCACATCGCCCACATATCTACAACTACCTATATCTTGCCGCGAGGAAA
AATCTTTCTTGCTTCACAAGCAACCGGTACTTTATGCTTGCGCAACAACT
GGTGTATCGTCATCCAATCCCGCGTACTGCCTGCCACAAGGACTTACATC
ACTCTTGTAGTGGCGGAATGCAGGCCGGGGCTTTTAGTAATCCTTGTACC
TGTGTTACGGGCTATATCCCTTTGACTGAGGGTCCACAGGGGATCAGGGG
GATCCATGTCCCCTCGAGCTTGACTGAGGATCCATACGGGGCGGCTCACA
ACCACCGAAGCAACAAGGCAAGGAACACCAGCATCAACGACAGCAGCAGC
AACAACAGCATGTGCAACAGCAACAGCAAGATCCCTGGTAGAGGACCGCA
GCAGCAGCAGCAGTGGTCGTGGAAGGGAACAGATGTGGGGCTCCGGCGTG
TCTGCAACAACGAGCGTGCCTCATACCCCTTCACAGCTGCAATGAAGCCC
CTTCACTTCGACGGCACCGCTAGTCACATTCGAGCAAGCGTGGATCGAGG
GCGGTTTTTAGTAGAACGCAAATGGAGGATGCAGCTTAGTTTGTTCGGCA
ACATCTCTGCGTTCACTAAGCATGATGACGACCCAGCTCCCACGGCGGTC
CCACCATACACATTACAAGTACTTTTCAAGATGGGCCGGCGCGACAAACA
CCAGCGAATTGCCCTGGTGGTAGCGTCGGAGAAAGAAGAGCTAGAGGCGG
GCGTGTAAATGCCCTTTCTTATCCTTTCGTGCTCTATCGCACATCGCCCA
CATATCTACAACTACCTATATCTTGCCGCGAGGAAAAATCTTTCTTGCTT
CACAAGCAACCGGTACTTTATGCTTGCGCAACAACTGGTGTATCGTCATC
CAATCCCGCGTACTGCCTGCCACAAGGACTTACATCACTCTTGTAGTGGC
GGAATGCAGGCCGGGGCTTTTAGTAATCCTTGTACCTGTGTTACGGGCTA
TATCCCTTTGACTGAGGGTCCACAGGGGATCAGGGGGATCCATGTCCCCT
CGAGCTTGACTGAGGATCCATACGGGGCGGCTCACAACCACCGAAGCAAC
AAGGCAAGGAACACCAGCATCAACGACAGCAGCAGCAACAACAGCATGTG
CAACAGCAACAGCAAGATCCCTGGTAGAGGACCGCAGCAGCAGCAGCAGT
GGTCGTGGAAGGGAACAGATGTGGGGCTCCGGCGTGTCTGCAACAACGAG
CGTGCCTCATACCCCTTCACAGCTGCAATGAAGCCCCTTCACTTCGACGG
CACCGCTAGTCACATTCGAGCAAGCGTGGATCGAGGGCGGTTTTTAGTAG
AACGCAAATGGAGGATGCAGCTTAGTTTGTTCGGCAACATCTCTGCGTTC
ACTAAGCATGATGACGACCCAGCTCCCACGGCGGTCCCACCATACACATT
ACAAGTACTTTTCAAGATGGGCCGGCGCGACAAACACCAGCGAATTGCCC
TGGTGGTAGCGTCGGAGAAAGAAGAGCTAGAGGCGGGCGTGTAA

Synonyms

Publications