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Properties
| Property Name | Value |
|---|
| TranscriptId | 216053 |
| Track | FilteredModels2 |
| ProteinId | 215967 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:223043..225443 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8709 ID=mRNA_8709|Name=jgi.p|Nanoce1779_2|215967|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp
CCAGCCCGGGCCACAGGCCGCAACACCAGCAGCAAGCACCGGCGCAAGGA
GCTCACCACCCACATCATCTTCGGGGAGCTGCATAAAAGCAGGCCGGAAA
AAGTACCTCTATAGCCACCCAAGCAGCGTTACCACAGCATGGACTTGATC
AATAAATTAGTGGGTGGGCAAGGCTGCACGGCGGATGGCGCCGCTGCCGC
TCGCAACCCCTTGGCCCGCTTGGTGGATAGCGTCCTGGATACAGCACCGA
TGCCTGACGGCGCCATCCGTGATGCGGGGGCGCATAGCGGTCCCATGGCG
GCCGGTCTACAAGCCGGACTGTATGAAGGGGGGGAGGCCATGCTCCACCA
CTACCATCCTCACCACCACCACCACCCGCCTCACGGCCCCCCACCGCCGC
CCCCTCTTATGGTGATAGGGAGGGGAAGGGGGAGAGGAAGTGAAAGCAGG
GGAGGCGATCCGTGGGCGCAGGAGTTCATGCAAATGCCACCGGATGCCAG
AGCCATGCATCACCAGCAGCAGCAGCAGCGAGAGATGGAGGAGGCTTTCC
TGGAAGCGGAGCGGATGCGGAAGTACAGCACCGGCCCAACTAGGCTGCAT
CATCAAAGCCCCGCTTTCCATCACCAACACCAACGCCCCTTGCCGCAGCA
GCAAGGTCATCACGAGTGGAGCGCGGAGTTCGAACAGTCTCTTCCTCCCC
AACTTTGCCCCTCTCCCCCTCCTCCGCAGCACCAGCACCAACAGCATCCA
CACGCAGCATCCTTGGAGGCAGTGTGGGAGGAAGCAGAGGTCCATGCCCA
GCAATTGCAGCGCCAGTGTCAGCAGCAGGAGCAGCGCCATCAACAACAAG
GAGGGGAGCCGTGGGCTCAGGAGCTTGAACTGGGGGAAGCATGGTCGCAC
GCCGGCCAAGCCTTTCCCGCCCTCGAAGAGAGTCGTGTCGAGGCAGGCTC
CTCCTCACTCCCTCCCTCCCTTGAGGCCTCCCTCCCTCCCTCCCTCCATG
AAGACGACGCTCAGGCCACCCGTGCCGCCTCGGGGGCGGTCCTGGAGGCC
TTGCGGGAGGGAGGGAGGGAGGGGGGGGTGGGAGCCAAAATGGCGCGGTC
GGAGTTCGTGGGGTTTATCTCCCAGTTGAACAAAGGCGAGCTGGCATTCG
AGGGCAACACGGTAATATGCACATTGTGGCGGAACCCGGCCATCCCACTC
GCCTCTCATTCCCTTCTCCCCTCTCTCTCCTTTTCCTCACACCAGTAGCC
GCGCGCGAAATGAATGCTAGATACCGCACGGAGGGCACCAAGCGCATCTT
TCTCACCCCTCCCCCCGCTCCTCCCTTTTTCTTCCCTCCCTCAGGTGGTG
CCCAGAGCGGGAGATTTTGAAGGCGCCTGGGCAGAGACAGCGGAGGAACG
GCGGCACCAAGTAGCGCAAGGACTAGGTCTGGAGGGGGAGTGGGAGGCCG
CCGAACGGGCAGCAGTAGAGGGAC back to topprotein sequence of jgi.p|Nanoce1779_2|215967 >mRNA_8709-protein ID=mRNA_8709-protein|Name=jgi.p|Nanoce1779_2|215967|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MDLINKLVGGQGCTADGAAAARNPLARLVDSVLDTAPMPDGAIRDAGAHS
GPMAAGLQAGLYEGGEAMLHHYHPHHHHHPPHGPPPPPPLMVIGRGRGRG
SESRGGDPWAQEFMQMPPDARAMHHQQQQQREMEEAFLEAERMRKYSTGP
TRLHHQSPAFHHQHQRPLPQQQGHHEWSAEFEQSLPPQLCPSPPPPQHQH
QQHPHAASLEAVWEEAEVHAQQLQRQCQQQEQRHQQQGGEPWAQELELGE
AWSHAGQAFPALEESRVEAGSSSLPPSLEASLPPSLHEDDAQATRAASGA
VLEALREGGREGGVGAKMARSEFVGFISQLNKGELAFEGNTVICTLWRNP
AIPLASHSLLPSLSFSSHQ* back to topmRNA from alignment at scaffold_27:223043..225443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8709 ID=mRNA_8709|Name=jgi.p|Nanoce1779_2|215967|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at scaffold_27:223043..225443- (Nannochloropsis oceanica)
CCAGCCCGGGCCACAGGCCGCAACACCAGCAGCAAGCACCGGCGCAAGGA
GCTCACCACCCACATCATCTTCGGGGAGCTGCATAAAAGCAGGCCGGAAA
AAGTACCTCTATAGCCACCCAAGCAGCGTTACCACAGCATGGACTTGATC
AATAAATTAGTGGGTGGGCAAGGCTGCACGGCGGATGGCGCCGCTGCCGC
TCGCAACCCCTTGGCCCGCTTGGTGGATAGCGTCCTGGATACAGCACCGG
TGTGTAGAGGCTGTCTCAATCATCCCCGCGTCGTATTTTTTCATCCAATC
ACCTCTCCCTACCCTTTCCTCCCCCGTCCCATCCCATTTGTCTCGCCCCC
TTTCTTACTGACTCCCCACATTCATTTGACGCACCCCTACCCCCCCCCCC
CCCCCCTCTCCTTTGTTCCTGCCATTACACCACCAATACAGATGCCTGAC
GGCGCCATCCGTGATGCGGGGGCGCATAGCGGTCCCATGGCGGCCGGTCT
ACAAGCCGGACTGTATGAAGGGGGGGAGGCCATGCTCCACCACTACCATC
CTCACCACCACCACCACCCGCCTCACGGCCCCCCACCGCCGCCCCCTCTT
ATGGTGATAGGGAGGGGAAGGGGGAGAGGAAGTGAAAGCAGGGGAGGCGA
TCCGTGGGCGCAGGAGTTCATGCAAATGCCACCGGATGCCAGGTAGGAGG
GGGGGAGGGATGGAGGGGATCAGGGGAGCGAAGGAGAGATGGAGGAAGGC
ACAGTCAGAGAATTTATAGATGAAGTATGGTAGATCTGAAGACAGTGAAT
TTTGTACTTTTCCTGAAGCTATTTGCATAATCTAATCTGACACACAAATG
TGCCCACACTTACATGCTGGTGACGACAACAGAGCCATGCATCACCAGCA
GCAGCAGCAGCGAGAGATGGAGGAGGCTTTCCTGGAAGCGGAGCGGATGC
GGAAGTACAGCACCGGCCCAACTAGGGTGCGTTGTCCCTAGCAAGTAGTC
ATCCTCAGTTTCCAGTTATTTTCCTCGCTCGTACTGTCTCTTTCTCTACT
CCAGTTATTTTCCTCGCTCGTTCTGTCTCTTTCTCTACCACTTATCCCCT
CGTTTTCCCCCATCTTTCCTCCCTCCTTCCCGGCAGCTGCATCATCAAAG
CCCCGCTTTCCATCACCAACACCAACGCCCCTTGCCGCAGCAGCAAGGTC
ATCACGAGTGGAGCGCGGAGTTCGAACAGTCTCTTCCTCCCCAACTTTGC
CCCTCTCCCCCTCCTCCGCAGCACCAGCACCAACAGCATCCACACGCAGC
ATCCTTGGAGGCAGTGTGGGAGGAAGCAGAGGTCCATGCCCAGCAATTGC
AGCGCCAGTGTCAGCAGCAGGAGCAGCGCCATCAACAACAAGGAGGGGAG
CCGTGGGCTCAGGAGGTAGGCGGGGGAAGGGAGGAGGGAGGGAGGGAGGG
AGGGCACACATTCATAGATCTTCATTTTTTGTTCCTTGGCACCGAGCGAG
CTACTGCACGCCCATCCATATCCACCGGGACCCGCCTCTTAATCGGCCCT
TTCACCCAATATTGTTCCCTTCCTCCCTTCCTCCCTTCCTCCCTTCCTCC
CTTCCTCCCTTCCTCTCTTCCTCCCTCCCTCCCTCTTACTCTCTGCCCAA
GCTTGAACTGGGGGAAGCATGGTCGCACGCCGGCCAAGCCTTTCCCGCCC
TCGAAGAGAGTCGTGTCGAGGCAGGCTCCTCCTCACTCCCTCCCTCCCTT
GAGGCCTCCCTCCCTCCCTCCCTCCATGAAGACGACGCTCAGGCCACCCG
TGCCGCCTCGGGGGCGGTCCTGGAGGCCTTGCGGGAGGGAGGGAGGGAGG
GGGGGGTGGGAGCCAAAATGGCGCGGTCGGAGTTCGTGGGGTTTATCTCC
CAGTTGAACAAAGGCGAGCTGGCATTCGAGGGCAACACGGTAATATGCAC
ATTGTGGCGGAACCCGGCCATCCCACTCGCCTCTCATTCCCTTCTCCCCT
CTCTCTCCTTTTCCTCACACCAGTAGCCGCGCGCGAAATGAATGCTAGAT
ACCGCACGGAGGGCACCAAGCGCATCTTTCTCACCCCTCCCCCCGCTCCT
CCCTTTTTCTTCCCTCCCTCAGGTGGTGCCCAGAGCGGGAGATTTTGAAG
GCGCCTGGGCAGAGACAGCGGAGGAACGGCGGCACCAAGTAGCGCAAGGA
CTAGGTCTGGAGGGGGAGTGGGAGGCCGCCGAACGGGCAGCAGTAGAGGT
GAGAGACAAGAGGGAGTCAGGATTGAGAGAGGAAATGTGCTTGAGGGAGG
GAGGGAGGGTGGGTGGGAAGGAAGAAACAGCAGTGCCCACTCACCGGTCA
TTCCCGTCGGGTACTCACTCACGTGGATTTGTCTTTTCCATCACCAGGGA
C back to topCoding sequence (CDS) from alignment at scaffold_27:223043..225443- >mRNA_8709 ID=mRNA_8709|Name=jgi.p|Nanoce1779_2|215967|organism=Nannochloropsis oceanica|type=CDS|length=5550bp|location=Sequence derived from alignment at scaffold_27:223043..225443- (Nannochloropsis oceanica)
CTTGAACTGGGGGAAGCATGGTCGCACGCCGGCCAAGCCTTTCCCGCCCT
CGAAGAGAGTCGTGTCGAGGCAGGCTCCTCCTCACTCCCTCCCTCCCTTG
AGGCCTCCCTCCCTCCCTCCCTCCATGAAGACGACGCTCAGGCCACCCGT
GCCGCCTCGGGGGCGGTCCTGGAGGCCTTGCGGGAGGGAGGGAGGGAGGG
GGGGGTGGGAGCCAAAATGGCGCGGTCGGAGTTCGTGGGGTTTATCTCCC
AGTTGAACAAAGGCGAGCTGGCATTCGAGGGCAACACGGTAATATGCACA
TTGTGGCGGAACCCGGCCATCCCACTCGCCTCTCATTCCCTTCTCCCCTC
TCTCTCCTTTTCCTCACACCAGTAGCTGCATCATCAAAGCCCCGCTTTCC
ATCACCAACACCAACGCCCCTTGCCGCAGCAGCAAGGTCATCACGAGTGG
AGCGCGGAGTTCGAACAGTCTCTTCCTCCCCAACTTTGCCCCTCTCCCCC
TCCTCCGCAGCACCAGCACCAACAGCATCCACACGCAGCATCCTTGGAGG
CAGTGTGGGAGGAAGCAGAGGTCCATGCCCAGCAATTGCAGCGCCAGTGT
CAGCAGCAGGAGCAGCGCCATCAACAACAAGGAGGGGAGCCGTGGGCTCA
GGAGAGCCATGCATCACCAGCAGCAGCAGCAGCGAGAGATGGAGGAGGCT
TTCCTGGAAGCGGAGCGGATGCGGAAGTACAGCACCGGCCCAACTAGGAT
GCCTGACGGCGCCATCCGTGATGCGGGGGCGCATAGCGGTCCCATGGCGG
CCGGTCTACAAGCCGGACTGTATGAAGGGGGGGAGGCCATGCTCCACCAC
TACCATCCTCACCACCACCACCACCCGCCTCACGGCCCCCCACCGCCGCC
CCCTCTTATGGTGATAGGGAGGGGAAGGGGGAGAGGAAGTGAAAGCAGGG
GAGGCGATCCGTGGGCGCAGGAGTTCATGCAAATGCCACCGGATGCCAGA
TGGACTTGATCAATAAATTAGTGGGTGGGCAAGGCTGCACGGCGGATGGC
GCCGCTGCCGCTCGCAACCCCTTGGCCCGCTTGGTGGATAGCGTCCTGGA
TACAGCACCGCTTGAACTGGGGGAAGCATGGTCGCACGCCGGCCAAGCCT
TTCCCGCCCTCGAAGAGAGTCGTGTCGAGGCAGGCTCCTCCTCACTCCCT
CCCTCCCTTGAGGCCTCCCTCCCTCCCTCCCTCCATGAAGACGACGCTCA
GGCCACCCGTGCCGCCTCGGGGGCGGTCCTGGAGGCCTTGCGGGAGGGAG
GGAGGGAGGGGGGGGTGGGAGCCAAAATGGCGCGGTCGGAGTTCGTGGGG
TTTATCTCCCAGTTGAACAAAGGCGAGCTGGCATTCGAGGGCAACACGGT
AATATGCACATTGTGGCGGAACCCGGCCATCCCACTCGCCTCTCATTCCC
TTCTCCCCTCTCTCTCCTTTTCCTCACACCAGTAGCTGCATCATCAAAGC
CCCGCTTTCCATCACCAACACCAACGCCCCTTGCCGCAGCAGCAAGGTCA
TCACGAGTGGAGCGCGGAGTTCGAACAGTCTCTTCCTCCCCAACTTTGCC
CCTCTCCCCCTCCTCCGCAGCACCAGCACCAACAGCATCCACACGCAGCA
TCCTTGGAGGCAGTGTGGGAGGAAGCAGAGGTCCATGCCCAGCAATTGCA
GCGCCAGTGTCAGCAGCAGGAGCAGCGCCATCAACAACAAGGAGGGGAGC
CGTGGGCTCAGGAGAGCCATGCATCACCAGCAGCAGCAGCAGCGAGAGAT
GGAGGAGGCTTTCCTGGAAGCGGAGCGGATGCGGAAGTACAGCACCGGCC
CAACTAGGATGCCTGACGGCGCCATCCGTGATGCGGGGGCGCATAGCGGT
CCCATGGCGGCCGGTCTACAAGCCGGACTGTATGAAGGGGGGGAGGCCAT
GCTCCACCACTACCATCCTCACCACCACCACCACCCGCCTCACGGCCCCC
CACCGCCGCCCCCTCTTATGGTGATAGGGAGGGGAAGGGGGAGAGGAAGT
GAAAGCAGGGGAGGCGATCCGTGGGCGCAGGAGTTCATGCAAATGCCACC
GGATGCCAGATGGACTTGATCAATAAATTAGTGGGTGGGCAAGGCTGCAC
GGCGGATGGCGCCGCTGCCGCTCGCAACCCCTTGGCCCGCTTGGTGGATA
GCGTCCTGGATACAGCACCGCTTGAACTGGGGGAAGCATGGTCGCACGCC
GGCCAAGCCTTTCCCGCCCTCGAAGAGAGTCGTGTCGAGGCAGGCTCCTC
CTCACTCCCTCCCTCCCTTGAGGCCTCCCTCCCTCCCTCCCTCCATGAAG
ACGACGCTCAGGCCACCCGTGCCGCCTCGGGGGCGGTCCTGGAGGCCTTG
CGGGAGGGAGGGAGGGAGGGGGGGGTGGGAGCCAAAATGGCGCGGTCGGA
GTTCGTGGGGTTTATCTCCCAGTTGAACAAAGGCGAGCTGGCATTCGAGG
GCAACACGGTAATATGCACATTGTGGCGGAACCCGGCCATCCCACTCGCC
TCTCATTCCCTTCTCCCCTCTCTCTCCTTTTCCTCACACCAGTAGCTGCA
TCATCAAAGCCCCGCTTTCCATCACCAACACCAACGCCCCTTGCCGCAGC
AGCAAGGTCATCACGAGTGGAGCGCGGAGTTCGAACAGTCTCTTCCTCCC
CAACTTTGCCCCTCTCCCCCTCCTCCGCAGCACCAGCACCAACAGCATCC
ACACGCAGCATCCTTGGAGGCAGTGTGGGAGGAAGCAGAGGTCCATGCCC
AGCAATTGCAGCGCCAGTGTCAGCAGCAGGAGCAGCGCCATCAACAACAA
GGAGGGGAGCCGTGGGCTCAGGAGAGCCATGCATCACCAGCAGCAGCAGC
AGCGAGAGATGGAGGAGGCTTTCCTGGAAGCGGAGCGGATGCGGAAGTAC
AGCACCGGCCCAACTAGGATGCCTGACGGCGCCATCCGTGATGCGGGGGC
GCATAGCGGTCCCATGGCGGCCGGTCTACAAGCCGGACTGTATGAAGGGG
GGGAGGCCATGCTCCACCACTACCATCCTCACCACCACCACCACCCGCCT
CACGGCCCCCCACCGCCGCCCCCTCTTATGGTGATAGGGAGGGGAAGGGG
GAGAGGAAGTGAAAGCAGGGGAGGCGATCCGTGGGCGCAGGAGTTCATGC
AAATGCCACCGGATGCCAGATGGACTTGATCAATAAATTAGTGGGTGGGC
AAGGCTGCACGGCGGATGGCGCCGCTGCCGCTCGCAACCCCTTGGCCCGC
TTGGTGGATAGCGTCCTGGATACAGCACCGCTTGAACTGGGGGAAGCATG
GTCGCACGCCGGCCAAGCCTTTCCCGCCCTCGAAGAGAGTCGTGTCGAGG
CAGGCTCCTCCTCACTCCCTCCCTCCCTTGAGGCCTCCCTCCCTCCCTCC
CTCCATGAAGACGACGCTCAGGCCACCCGTGCCGCCTCGGGGGCGGTCCT
GGAGGCCTTGCGGGAGGGAGGGAGGGAGGGGGGGGTGGGAGCCAAAATGG
CGCGGTCGGAGTTCGTGGGGTTTATCTCCCAGTTGAACAAAGGCGAGCTG
GCATTCGAGGGCAACACGGTAATATGCACATTGTGGCGGAACCCGGCCAT
CCCACTCGCCTCTCATTCCCTTCTCCCCTCTCTCTCCTTTTCCTCACACC
AGTAGCTGCATCATCAAAGCCCCGCTTTCCATCACCAACACCAACGCCCC
TTGCCGCAGCAGCAAGGTCATCACGAGTGGAGCGCGGAGTTCGAACAGTC
TCTTCCTCCCCAACTTTGCCCCTCTCCCCCTCCTCCGCAGCACCAGCACC
AACAGCATCCACACGCAGCATCCTTGGAGGCAGTGTGGGAGGAAGCAGAG
GTCCATGCCCAGCAATTGCAGCGCCAGTGTCAGCAGCAGGAGCAGCGCCA
TCAACAACAAGGAGGGGAGCCGTGGGCTCAGGAGAGCCATGCATCACCAG
CAGCAGCAGCAGCGAGAGATGGAGGAGGCTTTCCTGGAAGCGGAGCGGAT
GCGGAAGTACAGCACCGGCCCAACTAGGATGCCTGACGGCGCCATCCGTG
ATGCGGGGGCGCATAGCGGTCCCATGGCGGCCGGTCTACAAGCCGGACTG
TATGAAGGGGGGGAGGCCATGCTCCACCACTACCATCCTCACCACCACCA
CCACCCGCCTCACGGCCCCCCACCGCCGCCCCCTCTTATGGTGATAGGGA
GGGGAAGGGGGAGAGGAAGTGAAAGCAGGGGAGGCGATCCGTGGGCGCAG
GAGTTCATGCAAATGCCACCGGATGCCAGATGGACTTGATCAATAAATTA
GTGGGTGGGCAAGGCTGCACGGCGGATGGCGCCGCTGCCGCTCGCAACCC
CTTGGCCCGCTTGGTGGATAGCGTCCTGGATACAGCACCGCTTGAACTGG
GGGAAGCATGGTCGCACGCCGGCCAAGCCTTTCCCGCCCTCGAAGAGAGT
CGTGTCGAGGCAGGCTCCTCCTCACTCCCTCCCTCCCTTGAGGCCTCCCT
CCCTCCCTCCCTCCATGAAGACGACGCTCAGGCCACCCGTGCCGCCTCGG
GGGCGGTCCTGGAGGCCTTGCGGGAGGGAGGGAGGGAGGGGGGGGTGGGA
GCCAAAATGGCGCGGTCGGAGTTCGTGGGGTTTATCTCCCAGTTGAACAA
AGGCGAGCTGGCATTCGAGGGCAACACGGTAATATGCACATTGTGGCGGA
ACCCGGCCATCCCACTCGCCTCTCATTCCCTTCTCCCCTCTCTCTCCTTT
TCCTCACACCAGTAGCTGCATCATCAAAGCCCCGCTTTCCATCACCAACA
CCAACGCCCCTTGCCGCAGCAGCAAGGTCATCACGAGTGGAGCGCGGAGT
TCGAACAGTCTCTTCCTCCCCAACTTTGCCCCTCTCCCCCTCCTCCGCAG
CACCAGCACCAACAGCATCCACACGCAGCATCCTTGGAGGCAGTGTGGGA
GGAAGCAGAGGTCCATGCCCAGCAATTGCAGCGCCAGTGTCAGCAGCAGG
AGCAGCGCCATCAACAACAAGGAGGGGAGCCGTGGGCTCAGGAGAGCCAT
GCATCACCAGCAGCAGCAGCAGCGAGAGATGGAGGAGGCTTTCCTGGAAG
CGGAGCGGATGCGGAAGTACAGCACCGGCCCAACTAGGATGCCTGACGGC
GCCATCCGTGATGCGGGGGCGCATAGCGGTCCCATGGCGGCCGGTCTACA
AGCCGGACTGTATGAAGGGGGGGAGGCCATGCTCCACCACTACCATCCTC
ACCACCACCACCACCCGCCTCACGGCCCCCCACCGCCGCCCCCTCTTATG
GTGATAGGGAGGGGAAGGGGGAGAGGAAGTGAAAGCAGGGGAGGCGATCC
GTGGGCGCAGGAGTTCATGCAAATGCCACCGGATGCCAGATGGACTTGAT
CAATAAATTAGTGGGTGGGCAAGGCTGCACGGCGGATGGCGCCGCTGCCG
CTCGCAACCCCTTGGCCCGCTTGGTGGATAGCGTCCTGGATACAGCACCG back to top
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