jgi.p|Nanoce1779_2|603678, mRNA_8707 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603678
Unique Name	mRNA_8707
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2073
Alignment location	scaffold_27:217113..219185 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603764
Track	FilteredModels2
ProteinId	603678

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:217113..219185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603678	gene_8707	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603678	mRNA_8707-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8707	CDS_8707	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:217113..219185+
coding sequence from alignment at scaffold_27:217113..219185+

mRNA sequence

>mRNA_8707 ID=mRNA_8707|Name=jgi.p|Nanoce1779_2|603678|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp
ACAGCTGATTTAAGAGTAAGTGCATTGCAAGGGAGGCGCTCCTGCAAACT
CAGCGCACCATGGCATCCAGCAGAAGAGATGGCCGCAGCCACGCCCCAAG
GCAAGCATCACCCTCGTCATCCTCCTGCAAAGTCTTCGGCGTGCTCGCTC
TGGTTGCCGCCGCTGCGCAAGCCTTTATCGTGCCTTCCGTCCCCACAGGA
AGATCTAGCGATATGATTCAGACAGCTCCTAGGCGGTCAGGTACGTCCTT
AGAGTGAGGGTCTAAACACGGGCGTCACTGAGATGGGAGTGATGCCAAAC
TCTCCTCATAGTTCCGTGTCATAAAGTGCCTGTGTGTCTGTGTTCCTTTA
TCTTTGTGTGTCTATGTACCTGTCCGTGGGCATCTTTTTGCTGTGCTTCT
GTGCGTTTGCGTGTGTATGTTTGTGTACGTATTTCTATGTGTGTGTGTGA
GCGTGTGTCAGACAGTGTCTGTCGGTCTGTCAAACTATGTATGTATGTGG
CCACCGCCCCGTGGGTTGCCAGTGGGCAGTCTTTGCATGTGTATGCTCGT
GTGCTGGCGTCTTTCATGTGCTCCCTTCCCAACTGTACCTTATTTCTCAG
TTCCCTCCTTTGCCGCTCTTCAAAACGGCATGCACCGACACGTGCTTTCT
CCCTCTCTTCCTCCCCTACTCCCCTCCACCAATAGCCACTCGCCTCTCCC
CCCTCTCCGTCGTTCTATCTCCTCGGCAACGCGAGGAGCGCGAGTTGGAA
GAAGCCGACGTCCGACGCGTCTACGGGTCCATTGCTCAAACGTTTGCGGA
CAAGGTGGCCGACAAGGCCCTCTCCACCTCTCCACCCCTTCTCTCCGCCG
CCCAAGTGGAGACAACCCTCCGCCCAGCTCTCGATAAGCTGGCCCGCAAG
GCATCCGTGGCTGTGACAGAGCAAGAGCTCCGGCCGGTCCTGGAGAAGAT
GGCGGGCAAAATCGGGCACAAGGTGTGGTACGTCACGGAGAAGGGCGACC
TGGAGGTGGTGCCCCTCGTCCTGGAGGCCGAGCAGCGGGAGATGGACGAG
ATGCGCGCGCTAATCGACGGCCGGAACTACACGGGGGCCCTGTCGATCTA
CCAAGGAAGGTACAAGCGCTTCCCGCGCAACCCACCGCCTCCCCGACAGA
CCTCCCTGGCCTTCGAGGCCCTGCATGCCGCGGGGCTGGTCAATCAAACC
GTCGTCCTCTACAACTATTGGTACGCCGCCAAGAATCAGGGGGGCAGAGT
TTTGGAGCCCGTCTCCCTCTACTGGGTTACTCGCTCTTTGCTCGAACACG
CTAATAGGCTGGACATGGCCGTGGACGTGTTCAGGGCCCACACCCGCTTC
GACTGCCTCCCCTCCGGCCCCACCCTCCTCCTCCTCCTCCAAGCCTGCCT
CGATCGGAACCTCTATGAACTCGCATCGGAGCTCCTGGAAGCCACTCATT
TGGGGGGGTTCGCCCTCCCCGCCTCACTAGGCAACGCCCTGGTGGAAGGC
CTGCTGGACCAAGGGTGCCTGGACCTGGCGGACCGGGCCGTCTCAATTCT
GCTCACGCGCCGCCTTCCCTTGGACGTGCGGGTGGGCACGTACTTCAAGA
ACTACATGGTGAAGAACGGGAGGATGCACCTGGCCTATTTGCACTTGACG
GATCCCCGGCTTACCCACAGTCGTTTCCGCGCGTCGGCCAACGGGTATAA
CATGCTTCTCTGGCGCATGTGCCGCGTGTTCATGAAGACGAGGGAGGCCG
CCCTTCCGCCCTCCGACCCTATCCAGACTTCCTCGCCTGCGGCATCGTCG
TCGTCGTCGTCTGCACCCTTGACGTCCAAGAACGAATTGAGGGGCCTGAC
GCTGCGAATTGCCCGTGTGGTGGCCATGATGAACAGGTTCGGGTACCGTG
TCACACCTCAGAGCGGAGCCATGCTGCAGGACGTGGCGGCTGCTACGGGT
GAGTTCGGGTTCTTCCAAGTGCTGGAGAAAAAGCTGAAGGAGATAGAGAA
AGAGGGAGGGGTGGAAGAACCTGATTTCGGATTGAAGTAGAGTGGTAACC
GAAGATGACGCCCAGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|603678

>mRNA_8707-protein ID=mRNA_8707-protein|Name=jgi.p|Nanoce1779_2|603678|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MYVCGHRPVGCQWAVFACVCSCAGVFHVLPSQLYLISQFPPLPLFKTACT
DTCFLPLFLPYSPPPIATRLSPLSVVLSPRQREERELEEADVRRVYGSIA
QTFADKVADKALSTSPPLLSAAQVETTLRPALDKLARKASVAVTEQELRP
VLEKMAGKIGHKVWYVTEKGDLEVVPLVLEAEQREMDEMRALIDGRNYTG
ALSIYQGRYKRFPRNPPPPRQTSLAFEALHAAGLVNQTVVLYNYWYAAKN
QGGRVLEPVSLYWVTRSLLEHANRLDMAVDVFRAHTRFDCLPSGPTLLLL
LQACLDRNLYELASELLEATHLGGFALPASLGNALVEGLLDQGCLDLADR
AVSILLTRRLPLDVRVGTYFKNYMVKNGRMHLAYLHLTDPRLTHSRFRAS
ANGYNMLLWRMCRVFMKTREAALPPSDPIQTSSPAASSSSSSAPLTSKNE
LRGLTLRIARVVAMMNRFGYRVTPQSGAMLQDVAAATGEFGFFQVLEKKL
KEIEKEGGVEEPDFGLK*

mRNA from alignment at scaffold_27:217113..219185+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8707 ID=mRNA_8707|Name=jgi.p|Nanoce1779_2|603678|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp|location=Sequence derived from alignment at scaffold_27:217113..219185+ (Nannochloropsis oceanica)
ACAGCTGATTTAAGAGTAAGTGCATTGCAAGGGAGGCGCTCCTGCAAACT
CAGCGCACCATGGCATCCAGCAGAAGAGATGGCCGCAGCCACGCCCCAAG
GCAAGCATCACCCTCGTCATCCTCCTGCAAAGTCTTCGGCGTGCTCGCTC
TGGTTGCCGCCGCTGCGCAAGCCTTTATCGTGCCTTCCGTCCCCACAGGA
AGATCTAGCGATATGATTCAGACAGCTCCTAGGCGGTCAGGTACGTCCTT
AGAGTGAGGGTCTAAACACGGGCGTCACTGAGATGGGAGTGATGCCAAAC
TCTCCTCATAGTTCCGTGTCATAAAGTGCCTGTGTGTCTGTGTTCCTTTA
TCTTTGTGTGTCTATGTACCTGTCCGTGGGCATCTTTTTGCTGTGCTTCT
GTGCGTTTGCGTGTGTATGTTTGTGTACGTATTTCTATGTGTGTGTGTGA
GCGTGTGTCAGACAGTGTCTGTCGGTCTGTCAAACTATGTATGTATGTGG
CCACCGCCCCGTGGGTTGCCAGTGGGCAGTCTTTGCATGTGTATGCTCGT
GTGCTGGCGTCTTTCATGTGCTCCCTTCCCAACTGTACCTTATTTCTCAG
TTCCCTCCTTTGCCGCTCTTCAAAACGGCATGCACCGACACGTGCTTTCT
CCCTCTCTTCCTCCCCTACTCCCCTCCACCAATAGCCACTCGCCTCTCCC
CCCTCTCCGTCGTTCTATCTCCTCGGCAACGCGAGGAGCGCGAGTTGGAA
GAAGCCGACGTCCGACGCGTCTACGGGTCCATTGCTCAAACGTTTGCGGA
CAAGGTGGCCGACAAGGCCCTCTCCACCTCTCCACCCCTTCTCTCCGCCG
CCCAAGTGGAGACAACCCTCCGCCCAGCTCTCGATAAGCTGGCCCGCAAG
GCATCCGTGGCTGTGACAGAGCAAGAGCTCCGGCCGGTCCTGGAGAAGAT
GGCGGGCAAAATCGGGCACAAGGTGTGGTACGTCACGGAGAAGGGCGACC
TGGAGGTGGTGCCCCTCGTCCTGGAGGCCGAGCAGCGGGAGATGGACGAG
ATGCGCGCGCTAATCGACGGCCGGAACTACACGGGGGCCCTGTCGATCTA
CCAAGGAAGGTACAAGCGCTTCCCGCGCAACCCACCGCCTCCCCGACAGA
CCTCCCTGGCCTTCGAGGCCCTGCATGCCGCGGGGCTGGTCAATCAAACC
GTCGTCCTCTACAACTATTGGTACGCCGCCAAGAATCAGGGGGGCAGAGT
TTTGGAGCCCGTCTCCCTCTACTGGGTTACTCGCTCTTTGCTCGAACACG
CTAATAGGCTGGACATGGCCGTGGACGTGTTCAGGGCCCACACCCGCTTC
GACTGCCTCCCCTCCGGCCCCACCCTCCTCCTCCTCCTCCAAGCCTGCCT
CGATCGGAACCTCTATGAACTCGCATCGGAGCTCCTGGAAGCCACTCATT
TGGGGGGGTTCGCCCTCCCCGCCTCACTAGGCAACGCCCTGGTGGAAGGC
CTGCTGGACCAAGGGTGCCTGGACCTGGCGGACCGGGCCGTCTCAATTCT
GCTCACGCGCCGCCTTCCCTTGGACGTGCGGGTGGGCACGTACTTCAAGA
ACTACATGGTGAAGAACGGGAGGATGCACCTGGCCTATTTGCACTTGACG
GATCCCCGGCTTACCCACAGTCGTTTCCGCGCGTCGGCCAACGGGTATAA
CATGCTTCTCTGGCGCATGTGCCGCGTGTTCATGAAGACGAGGGAGGCCG
CCCTTCCGCCCTCCGACCCTATCCAGACTTCCTCGCCTGCGGCATCGTCG
TCGTCGTCGTCTGCACCCTTGACGTCCAAGAACGAATTGAGGGGCCTGAC
GCTGCGAATTGCCCGTGTGGTGGCCATGATGAACAGGTTCGGGTACCGTG
TCACACCTCAGAGCGGAGCCATGCTGCAGGACGTGGCGGCTGCTACGGGT
GAGTTCGGGTTCTTCCAAGTGCTGGAGAAAAAGCTGAAGGAGATAGAGAA
AGAGGGAGGGGTGGAAGAACCTGATTTCGGATTGAAGTAGAGTGGTAACC
GAAGATGACGCCCAGAGGGAGGG

Coding sequence (CDS) from alignment at scaffold_27:217113..219185+

>mRNA_8707 ID=mRNA_8707|Name=jgi.p|Nanoce1779_2|603678|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_27:217113..219185+ (Nannochloropsis oceanica)
ATGTATGTATGTGGCCACCGCCCCGTGGGTTGCCAGTGGGCAGTCTTTGC
ATGTGTATGCTCGTGTGCTGGCGTCTTTCATGTGCTCCCTTCCCAACTGT
ACCTTATTTCTCAGTTCCCTCCTTTGCCGCTCTTCAAAACGGCATGCACC
GACACGTGCTTTCTCCCTCTCTTCCTCCCCTACTCCCCTCCACCAATAGC
CACTCGCCTCTCCCCCCTCTCCGTCGTTCTATCTCCTCGGCAACGCGAGG
AGCGCGAGTTGGAAGAAGCCGACGTCCGACGCGTCTACGGGTCCATTGCT
CAAACGTTTGCGGACAAGGTGGCCGACAAGGCCCTCTCCACCTCTCCACC
CCTTCTCTCCGCCGCCCAAGTGGAGACAACCCTCCGCCCAGCTCTCGATA
AGCTGGCCCGCAAGGCATCCGTGGCTGTGACAGAGCAAGAGCTCCGGCCG
GTCCTGGAGAAGATGGCGGGCAAAATCGGGCACAAGGTGTGGTACGTCAC
GGAGAAGGGCGACCTGGAGGTGGTGCCCCTCGTCCTGGAGGCCGAGCAGC
GGGAGATGGACGAGATGCGCGCGCTAATCGACGGCCGGAACTACACGGGG
GCCCTGTCGATCTACCAAGGAAGGTACAAGCGCTTCCCGCGCAACCCACC
GCCTCCCCGACAGACCTCCCTGGCCTTCGAGGCCCTGCATGCCGCGGGGC
TGGTCAATCAAACCGTCGTCCTCTACAACTATTGGTACGCCGCCAAGAAT
CAGGGGGGCAGAGTTTTGGAGCCCGTCTCCCTCTACTGGGTTACTCGCTC
TTTGCTCGAACACGCTAATAGGCTGGACATGGCCGTGGACGTGTTCAGGG
CCCACACCCGCTTCGACTGCCTCCCCTCCGGCCCCACCCTCCTCCTCCTC
CTCCAAGCCTGCCTCGATCGGAACCTCTATGAACTCGCATCGGAGCTCCT
GGAAGCCACTCATTTGGGGGGGTTCGCCCTCCCCGCCTCACTAGGCAACG
CCCTGGTGGAAGGCCTGCTGGACCAAGGGTGCCTGGACCTGGCGGACCGG
GCCGTCTCAATTCTGCTCACGCGCCGCCTTCCCTTGGACGTGCGGGTGGG
CACGTACTTCAAGAACTACATGGTGAAGAACGGGAGGATGCACCTGGCCT
ATTTGCACTTGACGGATCCCCGGCTTACCCACAGTCGTTTCCGCGCGTCG
GCCAACGGGTATAACATGCTTCTCTGGCGCATGTGCCGCGTGTTCATGAA
GACGAGGGAGGCCGCCCTTCCGCCCTCCGACCCTATCCAGACTTCCTCGC
CTGCGGCATCGTCGTCGTCGTCGTCTGCACCCTTGACGTCCAAGAACGAA
TTGAGGGGCCTGACGCTGCGAATTGCCCGTGTGGTGGCCATGATGAACAG
GTTCGGGTACCGTGTCACACCTCAGAGCGGAGCCATGCTGCAGGACGTGG
CGGCTGCTACGGGTGAGTTCGGGTTCTTCCAAGTGCTGGAGAAAAAGCTG
AAGGAGATAGAGAAAGAGGGAGGGGTGGAAGAACCTGATTTCGGATTGAA
GTAG

Synonyms

Publications