jgi.p|Nanoce1779_2|546607, mRNA_8706 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|546607
Unique NamemRNA_8706
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length911
Alignment locationscaffold_27:214562..216801 -

Link to JBrowse

Properties
Property NameValue
TranscriptId546693
TrackFilteredModels2
ProteinId546607
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:214562..216801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546607gene_8706Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546607mRNA_8706-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8706CDS_8706Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8706 ID=mRNA_8706|Name=jgi.p|Nanoce1779_2|546607|organism=Nannochloropsis oceanica|type=mRNA|length=911bp
GGCTAGTGATGACAAGGGCCTTCCGTATTTCCGTGGTGATTACATCCTGA
TGGGCGGGTCTGTGGTTGTAGTCTCGCCCCTTTCCTGAATACGTGTAGTC
GGGTGGGTGTGTCTGGGTACGACGTCCGCGTTGTGGTGGACGAGGCATTG
CATCACACCCATCCATCTGTCTAATTTCTCTTGCCCCTTTACAGCAAAGC
CAGCCAGCGAAAATCATGAGTGACTACGGAGACGACAACGCTCCTCCTCC
CCCTCCCAGTGGCGGTGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAAGG
GCCCCCCCAACATCGATGGCATGCACACGCTCAAGATCGACAACATCCGC
TACGACTGCTCGTCGGAGGACCTACGAGATCTCTTCAAGGACACTGGAGA
TATTGGGGACGTCTACATCCCTCGCGACCACCGCTCAGGCGACTCCCGCG
GGTTCGCATTCGTGCGCTACTACAACAAGGAGGACGCCGAGAAGGCCATG
GAGAAGCTCGACGGGACCGACTTCAAGGGCCGGGACCTGCGAGTGGCGTT
TGCAAATCGCAAGAGGCCCGACAATCCCCGGGAGATCGGAGGCTACCGAG
GGGGAGGAGGGGGAGGACGCTACGGGGACGACCGCCGCGGTGGCGGCCAT
GGCGGAGGATATGGTGGCGGAGGAGGAGGATATGGCGGGGGAGGAGGATA
TGGCGGCGGAATGTACGGTGGCGGGCGTGACCGATGTAAGTCTTTTTGGT
GCGGGTGTCTTCCTCCCTCTCATTCCTCCCCCCTGCTACCCTTCTTCTCT
CTCTTTCTTCTCGTATTTTCTGTAACGTTTACACCTACCCTGTCACCTTT
CCCTTCCGTCCTCAGTCGATGACCGGCGGGGGGGGGGGGGGCTATGGTGA
TGACCGCCGTG
back to top

protein sequence of jgi.p|Nanoce1779_2|546607

>mRNA_8706-protein ID=mRNA_8706-protein|Name=jgi.p|Nanoce1779_2|546607|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MSDYGDDNAPPPPPSGGGGGGSGGGERKGPPNIDGMHTLKIDNIRYDCSS
EDLRDLFKDTGDIGDVYIPRDHRSGDSRGFAFVRYYNKEDAEKAMEKLDG
TDFKGRDLRVAFANRKRPDNPREIGGYRGGGGGGRYGDDRRGGGHGGGYG
GGGGGYGGGGGYGGGMYGGGRDRCKSFWCGCLPPSHSSPLLPFFSLFLLV
FSVTFTPTLSPFPSVLSR*
back to top

mRNA from alignment at scaffold_27:214562..216801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8706 ID=mRNA_8706|Name=jgi.p|Nanoce1779_2|546607|organism=Nannochloropsis oceanica|type=mRNA|length=2240bp|location=Sequence derived from alignment at scaffold_27:214562..216801- (Nannochloropsis oceanica)
GGCTAGTGATGACAAGGGCCTTCCGTATTTCCGTGGTGATTACATCCTGA
TGGGCGGGTCTGTGGTTGTAGTCTCGCCCCTTTCCTGAATACGTGTAGTC
GGGTGGGTGTGTCTGGGTACGACGTCCGCGTTGTGGTGGACGAGGCATTG
CATCACACCCATCCATCTGTCTAATTTCTCTTGCCCCTTTACAGCAAAGC
CAGCCAGCGAAAATCATGAGTGACTACGGAGACGACAACGCTCCTCCTCC
CCCTCCCAGTGGCGGTGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAAGG
GCCCCCCCAACATCGATGGCATGCACGTAAGTTTCTTGAAAGTAGTGAGT
AACTCGCCGAGGATGCGCTGCGGGAAGCAAAATGGGCGGCGGGAGTGAAT
GAGGGTAGACAGAAAGGCATGTGGCCGGCCACAGTGATTATCCCTGACAT
GCGACACCCGCGCACTTGCCGGCAAGGCTTTTGGCTCAGCATGCAATCAG
GGACTCTTGTGATGGTTAATATTGCGCGTACATCTCTCAACATCGTCTCG
TCTGCAGACTGACCATTCGCTCCTCCTTTACTCCGCTCTCCTTCCCCGCT
TCCTCACATAGACGCTCAAGATCGACAACATCCGCTACGACTGCTCGTCG
GAGGACCTACGAGATCTCTTCAAGGAGTAAGTGGCATCTTCACGCATGCA
TACATTTTTTTTCTTTCCTGATGTATGCCCGCAGTCTTGATCTTTGTATA
ACTTAGGTTCAACCAGAAGATGTTGTATGTTTGTGGTTCAATAAGCGCTT
TAAAAGCCCACCCCAAGACTCACTTGTTCAATCGTTTGCTTCATCTTATC
TATCCACAAGAAGATAATGGATGAACACGTTAAAAAGATGACGTGATGGT
GGTTTGGTGGTCGTGTCTTTGGAAAGAGGAGGGAGGGAGAAAAATCAGGG
ATAGGTGACATTCTGTCAGCAGCAGCAGCGGCAGCAGTAGCAACAGCAGC
AGCAGCAGCATCAAGAAGTACGCTAGCAAGCGAGCCTGTCCCTGCACCTT
TTTTTGTTGCTAAGCAATGTACATGAATGATGTGACTGGGCTGCCCTTCC
CTGATGCTTCACGTTCCCGTTTCCCGTGTTTCCTGTCCTCTGGCTCTGCC
CCTGTCCGACCTGCCCTGCCTGCCATAGACCTGCCCTGCCTGCCATACCT
GTGTTTTTACCTTCCATGCGACAATTAGTGAGGCTGATGGCCAGCGCCTT
TTCGTGAGTCTGCTTTCGTGTACCCCTCATGGCCGCTACCATCATTCTTT
CCTGTTCTGTCCTGACCACCCACGTTAATTTGATAGCCTGCGGCTGCCCC
TGCCTGCGTGAGAGACGTGCGCGCGTGTTCGCAGCGGCTCCTCAAGTTCC
TGCCCCCTTGCTGCTGACCCAGGCATGCTGACCCGACTCCTGACGTTTCC
TTACAACACACCAACCCTCTTACCACAAACAAACAAACAAAACCAACTGC
TGCCGCCCTCTTCTTTCTTCAACTCCTCCTCCCCTCTCCGCCATCTCTCT
TCTTCCCTCTCCACCTCCTTCTCATCCCCGTTCGTTTTGTTTGGCAGCAC
TGGAGATATTGGGGACGTCTACATCCCTCGCGACCACCGCTCAGGCGACT
CCCGCGGGTTCGCATTCGTGCGCTACTACAACAAGGAGGACGCCGAGAAG
GCCATGGAGAAGCTCGACGGGACCGACTTCAAGGGCCGGGACCTGCGAGT
GGCGTTTGCAAATCGCAAGAGGCCCGACAATCCCCGGGAGATCGGAGGCT
ACCGAGGGGGAGGAGGGGGAGGACGCTACGGGTGAGAGACTGGTGGGGGA
GGGAGGAAGGGAAGGGGAAGGTTCTTTAAAATATGCCTTTTTTAGTTGTA
CATGCTCATCTCTCCTATATTATTTAACACGGACACACACGCATATGCGT
ATAGGGACGACCGCCGCGGTGGCGGCCATGGCGGAGGATATGGTGGCGGA
GGAGGAGGATATGGCGGGGGAGGAGGATATGGCGGCGGAATGTACGGTGG
CGGGCGTGACCGATGTAAGTCTTTTTGGTGCGGGTGTCTTCCTCCCTCTC
ATTCCTCCCCCCTGCTACCCTTCTTCTCTCTCTTTCTTCTCGTATTTTCT
GTAACGTTTACACCTACCCTGTCACCTTTCCCTTCCGTCCTCAGTCGATG
ACCGGCGGGGGGGGGGGGGGCTATGGTGATGACCGCCGTG
back to top

Coding sequence (CDS) from alignment at scaffold_27:214562..216801-

>mRNA_8706 ID=mRNA_8706|Name=jgi.p|Nanoce1779_2|546607|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_27:214562..216801- (Nannochloropsis oceanica)
GGACGACCGCCGCGGTGGCGGCCATGGCGGAGGATATGGTGGCGGAGGAG
GAGGATATGGCGGGGGAGGAGGATATGGCGGCGGAATGTACGGTGGCGGG
CGTGACCGATGTAAGTCTTTTTGGTGCGGGTGTCTTCCTCCCTCTCATTC
CTCCCCCCTGCTACCCTTCTTCTCTCTCTTTCTTCTCGTATTTTCTGTAA
CGTTTACACCTACCCTGTCACCTTTCCCTTCCGTCCTCAGTCGATGACAC
TGGAGATATTGGGGACGTCTACATCCCTCGCGACCACCGCTCAGGCGACT
CCCGCGGGTTCGCATTCGTGCGCTACTACAACAAGGAGGACGCCGAGAAG
GCCATGGAGAAGCTCGACGGGACCGACTTCAAGGGCCGGGACCTGCGAGT
GGCGTTTGCAAATCGCAAGAGGCCCGACAATCCCCGGGAGATCGGAGGCT
ACCGAGGGGGAGGAGGGGGAGGACGCTACGGACGCTCAAGATCGACAACA
TCCGCTACGACTGCTCGTCGGAGGACCTACGAGATCTCTTCAAGGAATGA
GTGACTACGGAGACGACAACGCTCCTCCTCCCCCTCCCAGTGGCGGTGGC
GGCGGTGGTAGCGGCGGAGGAGAGCGCAAGGGCCCCCCCAACATCGATGG
CATGCACGGACGACCGCCGCGGTGGCGGCCATGGCGGAGGATATGGTGGC
GGAGGAGGAGGATATGGCGGGGGAGGAGGATATGGCGGCGGAATGTACGG
TGGCGGGCGTGACCGATGTAAGTCTTTTTGGTGCGGGTGTCTTCCTCCCT
CTCATTCCTCCCCCCTGCTACCCTTCTTCTCTCTCTTTCTTCTCGTATTT
TCTGTAACGTTTACACCTACCCTGTCACCTTTCCCTTCCGTCCTCAGTCG
ATGACACTGGAGATATTGGGGACGTCTACATCCCTCGCGACCACCGCTCA
GGCGACTCCCGCGGGTTCGCATTCGTGCGCTACTACAACAAGGAGGACGC
CGAGAAGGCCATGGAGAAGCTCGACGGGACCGACTTCAAGGGCCGGGACC
TGCGAGTGGCGTTTGCAAATCGCAAGAGGCCCGACAATCCCCGGGAGATC
GGAGGCTACCGAGGGGGAGGAGGGGGAGGACGCTACGGACGCTCAAGATC
GACAACATCCGCTACGACTGCTCGTCGGAGGACCTACGAGATCTCTTCAA
GGAATGAGTGACTACGGAGACGACAACGCTCCTCCTCCCCCTCCCAGTGG
CGGTGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAAGGGCCCCCCCAACA
TCGATGGCATGCACGGACGACCGCCGCGGTGGCGGCCATGGCGGAGGATA
TGGTGGCGGAGGAGGAGGATATGGCGGGGGAGGAGGATATGGCGGCGGAA
TGTACGGTGGCGGGCGTGACCGATGTAAGTCTTTTTGGTGCGGGTGTCTT
CCTCCCTCTCATTCCTCCCCCCTGCTACCCTTCTTCTCTCTCTTTCTTCT
CGTATTTTCTGTAACGTTTACACCTACCCTGTCACCTTTCCCTTCCGTCC
TCAGTCGATGACACTGGAGATATTGGGGACGTCTACATCCCTCGCGACCA
CCGCTCAGGCGACTCCCGCGGGTTCGCATTCGTGCGCTACTACAACAAGG
AGGACGCCGAGAAGGCCATGGAGAAGCTCGACGGGACCGACTTCAAGGGC
CGGGACCTGCGAGTGGCGTTTGCAAATCGCAAGAGGCCCGACAATCCCCG
GGAGATCGGAGGCTACCGAGGGGGAGGAGGGGGAGGACGCTACGGACGCT
CAAGATCGACAACATCCGCTACGACTGCTCGTCGGAGGACCTACGAGATC
TCTTCAAGGAATGAGTGACTACGGAGACGACAACGCTCCTCCTCCCCCTC
CCAGTGGCGGTGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAAGGGCCCC
CCCAACATCGATGGCATGCACGGACGACCGCCGCGGTGGCGGCCATGGCG
GAGGATATGGTGGCGGAGGAGGAGGATATGGCGGGGGAGGAGGATATGGC
GGCGGAATGTACGGTGGCGGGCGTGACCGATGTAAGTCTTTTTGGTGCGG
GTGTCTTCCTCCCTCTCATTCCTCCCCCCTGCTACCCTTCTTCTCTCTCT
TTCTTCTCGTATTTTCTGTAACGTTTACACCTACCCTGTCACCTTTCCCT
TCCGTCCTCAGTCGATGACACTGGAGATATTGGGGACGTCTACATCCCTC
GCGACCACCGCTCAGGCGACTCCCGCGGGTTCGCATTCGTGCGCTACTAC
AACAAGGAGGACGCCGAGAAGGCCATGGAGAAGCTCGACGGGACCGACTT
CAAGGGCCGGGACCTGCGAGTGGCGTTTGCAAATCGCAAGAGGCCCGACA
ATCCCCGGGAGATCGGAGGCTACCGAGGGGGAGGAGGGGGAGGACGCTAC
GGACGCTCAAGATCGACAACATCCGCTACGACTGCTCGTCGGAGGACCTA
CGAGATCTCTTCAAGGAATGAGTGACTACGGAGACGACAACGCTCCTCCT
CCCCCTCCCAGTGGCGGTGGCGGCGGTGGTAGCGGCGGAGGAGAGCGCAA
GGGCCCCCCCAACATCGATGGCATGCAC
back to top
Synonyms
Publications