jgi.p|Nanoce1779_2|559893, mRNA_8705 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|559893
Unique Name	mRNA_8705
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1689
Alignment location	scaffold_27:211611..213299 +

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Properties


Property Name	Value
TranscriptId	559979
Track	FilteredModels2
ProteinId	559893

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:211611..213299 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559893	gene_8705	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559893	mRNA_8705-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8705	CDS_8705	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:211611..213299+
coding sequence from alignment at scaffold_27:211611..213299+

mRNA sequence

>mRNA_8705 ID=mRNA_8705|Name=jgi.p|Nanoce1779_2|559893|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp
ACAGGCAGCATGTGGCGGGATGACGGCATGCGGTTCAAGTCGCGACGGAG
CCCTGTCCTGGGTCGACAAGGGATGGTGGCCTCCTCTCAACCCTACGCCT
CGCAAACGGGCTTAGACGTTCTCAAGGCCGGCGGAAATGCTGTAGACGCC
GCTATTGCCATGGCTGCAGTCTTGAATGTGACGGAGCCGTGCTCGACGGG
GCTTGGCGGGGATTGTTTCATGCTATACTACGAGGCGGCTAGCAAGAGAG
TGCACGGCTTGAACGGAAGTGGTCGCAGCCCGAAAGCTCTGACTTTGGAC
AAGGCCCGGCAAGAGGCCCGCAGGGAGGGTGTCAGCGAGGAATGCGACGA
GATGGATCCCGCGCACATCCACTGTGTAACTGTGCCTGGGACGGCGGCCG
GGTGGGTGGACAGCTTGGAGCGGTTTGGGTCGGGGGGTAAGTTTACCCTC
GCTGAAGTCCTGGCGCCTGCTATCCGCCTTGCCGAGGAAGGCTTTCCCGT
CAGTCCTGTGACTGCGCATTGGTGGAGGGAGAACGAGACGCAACTCAATC
GTCCGGGAAACCACCAGGCAGAGCTCTTGTCGGCTTCGGGAAAGGCGCCG
ATGGCAGGGGAGGTATTCAAGAACCCGACATTGGCGGCTTCAATGCGAGA
GTTGGGGAAAGGTGGGAAGAAGGCGTTCTATGAGGGAAGGATTGGACAGG
CGATTGTAGATATGATCCAGGCTCAGGGAGGGGTGATGACGATGGAGGAT
TTGAAGGAACATGAAAGTACGTGGGTGGAAGCGATTTCGACGACGTATGG
CCCGGTGAGGGTGTGGGAGATTCCGCCAAACGGGCAGGGGTTGACGGCAT
TGCTGGCTTTGAATTACTTGAGTGCCTTGCGGCAGTTGGAAGGTTTGGAG
CATAATAGCGCTGACTATTTACATCAGCTGCTGGAGGTCATGCGCTTGGC
CTTTGCCGACTCAAGGTATTACGTCTCGGACCCAGACTCGTCCTCGATCC
CGCTCGACGACCTTCTCTCCCCGGAGTACGCCTCCGCGCGCGTCGAAGGC
TTCAATCCTCTCGTCGCCCAGGCGGATGTTTTCAAGGGTACACCCACTCG
TTCCTCCTCCACCGTCTCCTTCCAAGTGGTAGACGCGAAGGGAAACGCCG
TCTCCTTCGTCAACAGCAACTACATGTACTTTGGCTCGGGCCTGGTGCCC
CGTGGCTGTGGTTTCACGTTGCAGAACCGCGGGCACAACTTCTCCCTCGA
AACCGGGCACCCGAATGTGCTGGCCCCGCACAAAAGGCCGTATCACACCA
TCATCCCCGGAATGGCCACCTGGGCGTCGTCGGGCGATCTGTTCTCGAGC
TTCAGCAACATGGGAGGTTTCATGCAGCCGCAAGGGCACGTCCAAGTGCT
CTTGAATCTCCTCCTGTTTAACATGGATCCTCAAGCTGCAGTGGACTGCC
CGCGGTTCTGCATCAAGGATGGGACGCAGGGCGGGGCGATATCTTTCGAG
GAAGGGATCGAGGAAGGCGTCGTGGAGGAGTTGCGGCGGAGGGGCCACAC
CGTGTTGGATGAACGGAGGGAGGGCTATGGGCATCGGGCGGTGTTTGGGA
AGGCGCAGGTGGTGACACGCGACCCGGCCACGGGCGTGCTGTGGGGGGGT
TCGGACGGACGTGGGGACGGGTGTGTGTATGGCTGGTAG

protein sequence of jgi.p|Nanoce1779_2|559893

>mRNA_8705-protein ID=mRNA_8705-protein|Name=jgi.p|Nanoce1779_2|559893|organism=Nannochloropsis oceanica|type=polypeptide|length=560bp
MWRDDGMRFKSRRSPVLGRQGMVASSQPYASQTGLDVLKAGGNAVDAAIA
MAAVLNVTEPCSTGLGGDCFMLYYEAASKRVHGLNGSGRSPKALTLDKAR
QEARREGVSEECDEMDPAHIHCVTVPGTAAGWVDSLERFGSGGKFTLAEV
LAPAIRLAEEGFPVSPVTAHWWRENETQLNRPGNHQAELLSASGKAPMAG
EVFKNPTLAASMRELGKGGKKAFYEGRIGQAIVDMIQAQGGVMTMEDLKE
HESTWVEAISTTYGPVRVWEIPPNGQGLTALLALNYLSALRQLEGLEHNS
ADYLHQLLEVMRLAFADSRYYVSDPDSSSIPLDDLLSPEYASARVEGFNP
LVAQADVFKGTPTRSSSTVSFQVVDAKGNAVSFVNSNYMYFGSGLVPRGC
GFTLQNRGHNFSLETGHPNVLAPHKRPYHTIIPGMATWASSGDLFSSFSN
MGGFMQPQGHVQVLLNLLLFNMDPQAAVDCPRFCIKDGTQGGAISFEEGI
EEGVVEELRRRGHTVLDERREGYGHRAVFGKAQVVTRDPATGVLWGGSDG
RGDGCVYGW*

mRNA from alignment at scaffold_27:211611..213299+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8705 ID=mRNA_8705|Name=jgi.p|Nanoce1779_2|559893|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_27:211611..213299+ (Nannochloropsis oceanica)
ACAGGCAGCATGTGGCGGGATGACGGCATGCGGTTCAAGTCGCGACGGAG
CCCTGTCCTGGGTCGACAAGGGATGGTGGCCTCCTCTCAACCCTACGCCT
CGCAAACGGGCTTAGACGTTCTCAAGGCCGGCGGAAATGCTGTAGACGCC
GCTATTGCCATGGCTGCAGTCTTGAATGTGACGGAGCCGTGCTCGACGGG
GCTTGGCGGGGATTGTTTCATGCTATACTACGAGGCGGCTAGCAAGAGAG
TGCACGGCTTGAACGGAAGTGGTCGCAGCCCGAAAGCTCTGACTTTGGAC
AAGGCCCGGCAAGAGGCCCGCAGGGAGGGTGTCAGCGAGGAATGCGACGA
GATGGATCCCGCGCACATCCACTGTGTAACTGTGCCTGGGACGGCGGCCG
GGTGGGTGGACAGCTTGGAGCGGTTTGGGTCGGGGGGTAAGTTTACCCTC
GCTGAAGTCCTGGCGCCTGCTATCCGCCTTGCCGAGGAAGGCTTTCCCGT
CAGTCCTGTGACTGCGCATTGGTGGAGGGAGAACGAGACGCAACTCAATC
GTCCGGGAAACCACCAGGCAGAGCTCTTGTCGGCTTCGGGAAAGGCGCCG
ATGGCAGGGGAGGTATTCAAGAACCCGACATTGGCGGCTTCAATGCGAGA
GTTGGGGAAAGGTGGGAAGAAGGCGTTCTATGAGGGAAGGATTGGACAGG
CGATTGTAGATATGATCCAGGCTCAGGGAGGGGTGATGACGATGGAGGAT
TTGAAGGAACATGAAAGTACGTGGGTGGAAGCGATTTCGACGACGTATGG
CCCGGTGAGGGTGTGGGAGATTCCGCCAAACGGGCAGGGGTTGACGGCAT
TGCTGGCTTTGAATTACTTGAGTGCCTTGCGGCAGTTGGAAGGTTTGGAG
CATAATAGCGCTGACTATTTACATCAGCTGCTGGAGGTCATGCGCTTGGC
CTTTGCCGACTCAAGGTATTACGTCTCGGACCCAGACTCGTCCTCGATCC
CGCTCGACGACCTTCTCTCCCCGGAGTACGCCTCCGCGCGCGTCGAAGGC
TTCAATCCTCTCGTCGCCCAGGCGGATGTTTTCAAGGGTACACCCACTCG
TTCCTCCTCCACCGTCTCCTTCCAAGTGGTAGACGCGAAGGGAAACGCCG
TCTCCTTCGTCAACAGCAACTACATGTACTTTGGCTCGGGCCTGGTGCCC
CGTGGCTGTGGTTTCACGTTGCAGAACCGCGGGCACAACTTCTCCCTCGA
AACCGGGCACCCGAATGTGCTGGCCCCGCACAAAAGGCCGTATCACACCA
TCATCCCCGGAATGGCCACCTGGGCGTCGTCGGGCGATCTGTTCTCGAGC
TTCAGCAACATGGGAGGTTTCATGCAGCCGCAAGGGCACGTCCAAGTGCT
CTTGAATCTCCTCCTGTTTAACATGGATCCTCAAGCTGCAGTGGACTGCC
CGCGGTTCTGCATCAAGGATGGGACGCAGGGCGGGGCGATATCTTTCGAG
GAAGGGATCGAGGAAGGCGTCGTGGAGGAGTTGCGGCGGAGGGGCCACAC
CGTGTTGGATGAACGGAGGGAGGGCTATGGGCATCGGGCGGTGTTTGGGA
AGGCGCAGGTGGTGACACGCGACCCGGCCACGGGCGTGCTGTGGGGGGGT
TCGGACGGACGTGGGGACGGGTGTGTGTATGGCTGGTAG

Coding sequence (CDS) from alignment at scaffold_27:211611..213299+

>mRNA_8705 ID=mRNA_8705|Name=jgi.p|Nanoce1779_2|559893|organism=Nannochloropsis oceanica|type=CDS|length=1680bp|location=Sequence derived from alignment at scaffold_27:211611..213299+ (Nannochloropsis oceanica)
ATGTGGCGGGATGACGGCATGCGGTTCAAGTCGCGACGGAGCCCTGTCCT
GGGTCGACAAGGGATGGTGGCCTCCTCTCAACCCTACGCCTCGCAAACGG
GCTTAGACGTTCTCAAGGCCGGCGGAAATGCTGTAGACGCCGCTATTGCC
ATGGCTGCAGTCTTGAATGTGACGGAGCCGTGCTCGACGGGGCTTGGCGG
GGATTGTTTCATGCTATACTACGAGGCGGCTAGCAAGAGAGTGCACGGCT
TGAACGGAAGTGGTCGCAGCCCGAAAGCTCTGACTTTGGACAAGGCCCGG
CAAGAGGCCCGCAGGGAGGGTGTCAGCGAGGAATGCGACGAGATGGATCC
CGCGCACATCCACTGTGTAACTGTGCCTGGGACGGCGGCCGGGTGGGTGG
ACAGCTTGGAGCGGTTTGGGTCGGGGGGTAAGTTTACCCTCGCTGAAGTC
CTGGCGCCTGCTATCCGCCTTGCCGAGGAAGGCTTTCCCGTCAGTCCTGT
GACTGCGCATTGGTGGAGGGAGAACGAGACGCAACTCAATCGTCCGGGAA
ACCACCAGGCAGAGCTCTTGTCGGCTTCGGGAAAGGCGCCGATGGCAGGG
GAGGTATTCAAGAACCCGACATTGGCGGCTTCAATGCGAGAGTTGGGGAA
AGGTGGGAAGAAGGCGTTCTATGAGGGAAGGATTGGACAGGCGATTGTAG
ATATGATCCAGGCTCAGGGAGGGGTGATGACGATGGAGGATTTGAAGGAA
CATGAAAGTACGTGGGTGGAAGCGATTTCGACGACGTATGGCCCGGTGAG
GGTGTGGGAGATTCCGCCAAACGGGCAGGGGTTGACGGCATTGCTGGCTT
TGAATTACTTGAGTGCCTTGCGGCAGTTGGAAGGTTTGGAGCATAATAGC
GCTGACTATTTACATCAGCTGCTGGAGGTCATGCGCTTGGCCTTTGCCGA
CTCAAGGTATTACGTCTCGGACCCAGACTCGTCCTCGATCCCGCTCGACG
ACCTTCTCTCCCCGGAGTACGCCTCCGCGCGCGTCGAAGGCTTCAATCCT
CTCGTCGCCCAGGCGGATGTTTTCAAGGGTACACCCACTCGTTCCTCCTC
CACCGTCTCCTTCCAAGTGGTAGACGCGAAGGGAAACGCCGTCTCCTTCG
TCAACAGCAACTACATGTACTTTGGCTCGGGCCTGGTGCCCCGTGGCTGT
GGTTTCACGTTGCAGAACCGCGGGCACAACTTCTCCCTCGAAACCGGGCA
CCCGAATGTGCTGGCCCCGCACAAAAGGCCGTATCACACCATCATCCCCG
GAATGGCCACCTGGGCGTCGTCGGGCGATCTGTTCTCGAGCTTCAGCAAC
ATGGGAGGTTTCATGCAGCCGCAAGGGCACGTCCAAGTGCTCTTGAATCT
CCTCCTGTTTAACATGGATCCTCAAGCTGCAGTGGACTGCCCGCGGTTCT
GCATCAAGGATGGGACGCAGGGCGGGGCGATATCTTTCGAGGAAGGGATC
GAGGAAGGCGTCGTGGAGGAGTTGCGGCGGAGGGGCCACACCGTGTTGGA
TGAACGGAGGGAGGGCTATGGGCATCGGGCGGTGTTTGGGAAGGCGCAGG
TGGTGACACGCGACCCGGCCACGGGCGTGCTGTGGGGGGGTTCGGACGGA
CGTGGGGACGGGTGTGTGTATGGCTGGTAG

Synonyms

Publications