jgi.p|Nanoce1779_2|215724, mRNA_8703 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|215724
Unique Name	mRNA_8703
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1595
Alignment location	scaffold_27:207949..210353 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	215810
Track	FilteredModels2
ProteinId	215724

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:207949..210353 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|215724	gene_8703	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|215724	mRNA_8703-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8703	CDS_8703	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:207949..210353+
coding sequence from alignment at scaffold_27:207949..210353+

mRNA sequence

>mRNA_8703 ID=mRNA_8703|Name=jgi.p|Nanoce1779_2|215724|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
ACCTTACCCCTGAGCACCCTAGCAGCCTAAATCGTCGGCGGCACTGGCGA
AGTTTTTGTCTCCAGCCAGCCACAACTCTGTGTGCCCCTCTTGATGAATC
TGGTCTTATCGTGGCGAGAAAAGAATATAATGACCAAAGCCGGTCATGAA
GCGGCATTGCTGGACCACCTCCCGGTGGCGGAAGGCGGGGGTGCAGATGC
GGAGGAGTACGAGGATGAAGGAAAAGTGACAAATGGAGGGGGCAAATGCT
TGGTAAGTTATTCAAGCGACACAGTCGCCACTGCATCCATGGACACTGAA
GGCCGTAGTTCCGCCACCAACGAAAGCAGCGCCCCCTCGAGTCCTCCCCC
AACATTGCACGACCTCCCGTACCTCGTCACCGCTGCCGCCTCATCCGCTC
TCCTCTCCCCGACTACCGTCACGAGCCGCCTTCAACATTTATGTCCGGCG
CTGTCCTTGTTTGCCGTGGTGGTGATACTTTTGGCTGTCGGGGGCATTTT
TATGGCGCTCTATCACAGCAAGTTGATGGGATTGACCACCTGGATGCAAG
AGCGGGCGCCGGACTCGGCTTTTTATTATGGGGCGTTTGTGGTCCTGTGG
GTGGTCTTGTGTCTGCCTTCTACCTTTGTGGAGTTGTGTGGGGGCTTTAT
TTTTGGTTTCCCCGTCGCCCTCATAACCACCGGGCTTGCCAAACCCATGG
GCTGTTGCCTCGCCTTCCTCCTCGGTCGCTGCGTCGCCGCCGACTCCCTC
CGAAACGGCCTTCTCCTCCCTCCCACGCCCCGAGACCACAGCAGTAGCAG
CAACAACAGCAGTAGCAATAGTGGCAGAAACAATGCTCGTCGGGCCCGTG
CACTCTTTTTGGCTATGGAGAGGCATCCTTGGAAGATGTGCCTTCTTCTC
CGCTTCATGTACCTGCCGATCGCAGTCAAGAACTACGGCATGGCGACCTT
ACCCTGTCCCTTCCACATCTTCGCCCTTTGCACACTGGCTGCCTCCTTGC
CGTACACTCTTCTGTGGGCACACACCGGGGCCTCGTCTCGTTCGCTTTAC
GATGTGGTGGAGGGGAGGGGAGGGAGACACGGAGGAAAGGGGTTGCCGAG
GGCCTTGGAGGCTACAGCGGCTGTTGGGATTGAAGGGGGTAGTAAAAGAG
CGCGTGGCACATGTACAGAAGGCGTTGTCCGACGACAAGAAAGAGGGAAG
TAAGAAAGCGCAAGACGGCAAGGCCGCCGCATGGGATGGTGAGGATAAGC
AGGCAGTCGAAGAAAGCACTCAGAGAGAGGTGGGCAGTGGGCACACACGC
ACTCTCACGCACAAAGCAGCCGCCTCGCCACCAGAGGGCTGAGGAGAATG
CCAGGGAAATTTAAAGTAGAGTATAACCACAACGCAAGGGAGAGAGTGAT
GACGCTCACCCCGAGCCAGCGCCCCCGATGCCCCCCACCCGGCGCGCTCC
GAATCAAAAACACATGGACAGGCGACGACGACCGGAATATAAGGATGGCG
CCAAAAGACAGACAAACAAGGTGGCAGAAAGCCTGTCGGATCTAGTGCAA
TAAATCAGGAAATAAGGCAATTAATGATATTCCGATATTCGGAAC

protein sequence of jgi.p|Nanoce1779_2|215724

>mRNA_8703-protein ID=mRNA_8703-protein|Name=jgi.p|Nanoce1779_2|215724|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MNLVLSWREKNIMTKAGHEAALLDHLPVAEGGGADAEEYEDEGKVTNGGG
KCLVSYSSDTVATASMDTEGRSSATNESSAPSSPPPTLHDLPYLVTAAAS
SALLSPTTVTSRLQHLCPALSLFAVVVILLAVGGIFMALYHSKLMGLTTW
MQERAPDSAFYYGAFVVLWVVLCLPSTFVELCGGFIFGFPVALITTGLAK
PMGCCLAFLLGRCVAADSLRNGLLLPPTPRDHSSSSNNSSSNSGRNNARR
ARALFLAMERHPWKMCLLLRFMYLPIAVKNYGMATLPCPFHIFALCTLAA
SLPYTLLWAHTGASSRSLYDVVEGRGGRHGGKGLPRALEATAAVGIEGGS
KRARGTCTEGVVRRQERGK*

mRNA from alignment at scaffold_27:207949..210353+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8703 ID=mRNA_8703|Name=jgi.p|Nanoce1779_2|215724|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp|location=Sequence derived from alignment at scaffold_27:207949..210353+ (Nannochloropsis oceanica)
ACCTTACCCCTGAGCACCCTAGCAGCCTAAATCGTCGGCGGCACTGGCGA
AGTTTTTGTCTCCAGCCAGCCACAACTCTGTGTGCCCCTCTTGATGAATC
TGGTCTTATCGTGGCGAGAAAAGAATATAATGACCAAAGCCGGTCATGAA
GCGGCATTGCTGGACCACCTCCCGGTGGCGGAAGGCGGGGGTGCAGATGC
GGAGGAGTACGAGGATGAAGGAAAAGTGACAAATGGAGGGGGCAAATGCT
TGGTAAGTTATTCAAGCGACACAGTCGCCACTGCATCCATGGACACTGAA
GGCCGTAGTTCCGCCACCAACGAAAGCAGCGCCCCCTCGAGTCCTCCCCC
AACATTGCACGACCTCCCGTACCTCGTCACCGCTGCCGCCTCATCCGCTC
TCCTCTCCCCGACTACCGTCACGAGCCGCCTTCAACATTTATGTCCGGCG
CTGTCCTTGTTTGCCGTGGTGGTGATACTTTTGGCTGTCGGGGGCATTTT
TATGGCGCTCTATCACAGCAAGTTGATGGGATTGACCACCTGGATGCAAG
AGCGGGCGCCGGACTCGGCTTTTTATTATGGGGCGTTTGTGGTCCTGTGG
GTGGTCTTGTGTCTGCCTTCTACCTTTGTGGAGTTGTGTGGGGGCTTTAT
TTTTGGTAAGTGCTTGTCATAAGTTCCTCTTTTCTCCTCTTGGGACGTAA
TCTTTCCCTTCACTCTTACTTAAGCTGATCGCTCCACCCTACCTTCCTGG
TCGTCTTTCCTCTCTCACACAACTCTTCCCCTGCCCCTCTCCTTCAGGTT
TCCCCGTCGCCCTCATAACCACCGGGCTTGCCAAACCCATGGGCTGTTGC
CTCGCCTTCCTCCTCGGTCGCTGCGTCGCCGCCGACTCCCTCCGAAACGG
CCTTCTCCTCCCTCCCACGCCCCGAGACCACAGCAGTAGCAGCAACAACA
GCAGTAGCAATAGTGGCAGAAACAATGCTCGTCGGGCCCGTGCACTCTTT
TTGGCTATGGAGAGGCATCCTTGGAAGATGTGCCTTCTTCTCCGCTTCAT
GTACCTGCCGATCGCAGTCAAGGTGAGTAGACCAATATCTGGCTCCCTCC
CTCCCTTCTTCCTCTCATCCATCCACCCCGGATGGACGTTGATCCCTCCT
GTTTCCTTTCCTCTTGCTGCAGCGATGGCCCATTCTAACCATCATATTTC
TTGTCTCTCCCTTCCTTCCCCCCTTCCTTCCTTCTTCCCCTAGAACTACG
GCATGGCGACCTTACCCTGTCCCTTCCACATCTTCGCCCTTTGCACACTG
GCTGCCTCCTTGCCGTACACTCTTCTGTGGGCACACACCGGGGCCTCGTC
TCGTTCGCTTTACGATGTGGTGGAGGGGAGGGGAGGGAGACACGGAGGAA
AGGTGAGCTGGGAGGAGGTAGGGGTGATGATGGGGGGGCTGCTCCTTGCG
GTGGTGGTGGCTTTCCTGTTGAGGTTTTATACGGTAAAATATATGGGGGC
CTTGGCAGAGGAGGAGGAGAGGGATGTCATGGAGGAGGAGGAGGAGGAGG
AGGGGGAGGAGAGGGGAGAGGGTGAAAGGGCGGGCTTATGGGGGGGTCAG
GATTGGGAGGAGGGGAGGAGGGGAAGAAAAGAGGAGGAGGGGGAGGCGTT
GTTGGCAGGCCGGATGGCGGCTCTGAGGGGGAGTGGATATGGAGGGGCGG
GGGAGGCGGCAAGGGGGAAAGTGGAGGGGAATGAGGGTGGGAGGGGAGGA
GGAGAGGGAAGGGAGGCAGAGGTTGGGGTGGTTGGGCCGTGTGAGGGCCC
GAATGAACACGTGAGAAGGTGTAAGGAGTGAGGAGAAGAAGTGGAGGGGT
CGGAAACGAAGCGTTGAGATAATAATTTATTGTCACTGGAAATGAACAGG
GGTTGCCGAGGGCCTTGGAGGCTACAGCGGCTGTTGGGATTGAAGGGGGT
AGTAAAAGAGCGCGTGGCACATGTACAGAAGGCGTTGTCCGACGACAAGA
AAGAGGGAAGTAAGAAAGCGCAAGACGGCAAGGCCGCCGCATGGGATGGT
GAGGATAAGCAGGCAGTCGAAGAAAGCACTCAGAGAGAGGTGGGCAGTGG
GCACACACGCACTCTCACGCACAAAGCAGCCGCCTCGCCACCAGAGGGCT
GAGGAGAATGCCAGGGAAATTTAAAGTAGAGTATAACCACAACGCAAGGG
AGAGAGTGATGACGCTCACCCCGAGCCAGCGCCCCCGATGCCCCCCACCC
GGCGCGCTCCGAATCAAAAACACATGGACAGGCGACGACGACCGGAATAT
AAGGATGGCGCCAAAAGACAGACAAACAAGGTGGCAGAAAGCCTGTCGGA
TCTAGTGCAATAAATCAGGAAATAAGGCAATTAATGATATTCCGATATTC
GGAAC

Coding sequence (CDS) from alignment at scaffold_27:207949..210353+

>mRNA_8703 ID=mRNA_8703|Name=jgi.p|Nanoce1779_2|215724|organism=Nannochloropsis oceanica|type=CDS|length=4440bp|location=Sequence derived from alignment at scaffold_27:207949..210353+ (Nannochloropsis oceanica)
ATGAATCTGGTCTTATCGTGGCGAGAAAAGAATATAATGACCAAAGCCGG
TCATGAAGCGGCATTGCTGGACCACCTCCCGGTGGCGGAAGGCGGGGGTG
CAGATGCGGAGGAGTACGAGGATGAAGGAAAAGTGACAAATGGAGGGGGC
AAATGCTTGGTAAGTTATTCAAGCGACACAGTCGCCACTGCATCCATGGA
CACTGAAGGCCGTAGTTCCGCCACCAACGAAAGCAGCGCCCCCTCGAGTC
CTCCCCCAACATTGCACGACCTCCCGTACCTCGTCACCGCTGCCGCCTCA
TCCGCTCTCCTCTCCCCGACTACCGTCACGAGCCGCCTTCAACATTTATG
TCCGGCGCTGTCCTTGTTTGCCGTGGTGGTGATACTTTTGGCTGTCGGGG
GCATTTTTATGGCGCTCTATCACAGCAAGTTGATGGGATTGACCACCTGG
ATGCAAGAGCGGGCGCCGGACTCGGCTTTTTATTATGGGGCGTTTGTGGT
CCTGTGGGTGGTCTTGTGTCTGCCTTCTACCTTTGTGGAGTTGTGTGGGG
GCTTTATTTTTGGTTTCCCCGTCGCCCTCATAACCACCGGGCTTGCCAAA
CCCATGGGCTGTTGCCTCGCCTTCCTCCTCGGTCGCTGCGTCGCCGCCGA
CTCCCTCCGAAACGGCCTTCTCCTCCCTCCCACGCCCCGAGACCACAGCA
GTAGCAGCAACAACAGCAGTAGCAATAGTGGCAGAAACAATGCTCGTCGG
GCCCGTGCACTCTTTTTGGCTATGGAGAGGCATCCTTGGAAGATGTGCCT
TCTTCTCCGCTTCATGTACCTGCCGATCGCAGTCAAGAACTACGGCATGG
CGACCTTACCCTGTCCCTTCCACATCTTCGCCCTTTGCACACTGGCTGCC
TCCTTGCCGTACACTCTTCTGTGGGCACACACCGGGGCCTCGTCTCGTTC
GCTTTACGATGTGGTGGAGGGGAGGGGAGGGAGACACGGAGGAAAGGGGT
TGCCGAGGGCCTTGGAGGCTACAGCGGCTGTTGGGATTGAAGGGGGTAGT
AAAAGAGCGCGTGGCACATGTACAGAAGGCGTTGTCCGACGACAAGAAAG
AGGGAAGTAAATGAATCTGGTCTTATCGTGGCGAGAAAAGAATATAATGA
CCAAAGCCGGTCATGAAGCGGCATTGCTGGACCACCTCCCGGTGGCGGAA
GGCGGGGGTGCAGATGCGGAGGAGTACGAGGATGAAGGAAAAGTGACAAA
TGGAGGGGGCAAATGCTTGGTAAGTTATTCAAGCGACACAGTCGCCACTG
CATCCATGGACACTGAAGGCCGTAGTTCCGCCACCAACGAAAGCAGCGCC
CCCTCGAGTCCTCCCCCAACATTGCACGACCTCCCGTACCTCGTCACCGC
TGCCGCCTCATCCGCTCTCCTCTCCCCGACTACCGTCACGAGCCGCCTTC
AACATTTATGTCCGGCGCTGTCCTTGTTTGCCGTGGTGGTGATACTTTTG
GCTGTCGGGGGCATTTTTATGGCGCTCTATCACAGCAAGTTGATGGGATT
GACCACCTGGATGCAAGAGCGGGCGCCGGACTCGGCTTTTTATTATGGGG
CGTTTGTGGTCCTGTGGGTGGTCTTGTGTCTGCCTTCTACCTTTGTGGAG
TTGTGTGGGGGCTTTATTTTTGGTTTCCCCGTCGCCCTCATAACCACCGG
GCTTGCCAAACCCATGGGCTGTTGCCTCGCCTTCCTCCTCGGTCGCTGCG
TCGCCGCCGACTCCCTCCGAAACGGCCTTCTCCTCCCTCCCACGCCCCGA
GACCACAGCAGTAGCAGCAACAACAGCAGTAGCAATAGTGGCAGAAACAA
TGCTCGTCGGGCCCGTGCACTCTTTTTGGCTATGGAGAGGCATCCTTGGA
AGATGTGCCTTCTTCTCCGCTTCATGTACCTGCCGATCGCAGTCAAGAAC
TACGGCATGGCGACCTTACCCTGTCCCTTCCACATCTTCGCCCTTTGCAC
ACTGGCTGCCTCCTTGCCGTACACTCTTCTGTGGGCACACACCGGGGCCT
CGTCTCGTTCGCTTTACGATGTGGTGGAGGGGAGGGGAGGGAGACACGGA
GGAAAGGGGTTGCCGAGGGCCTTGGAGGCTACAGCGGCTGTTGGGATTGA
AGGGGGTAGTAAAAGAGCGCGTGGCACATGTACAGAAGGCGTTGTCCGAC
GACAAGAAAGAGGGAAGTAAATGAATCTGGTCTTATCGTGGCGAGAAAAG
AATATAATGACCAAAGCCGGTCATGAAGCGGCATTGCTGGACCACCTCCC
GGTGGCGGAAGGCGGGGGTGCAGATGCGGAGGAGTACGAGGATGAAGGAA
AAGTGACAAATGGAGGGGGCAAATGCTTGGTAAGTTATTCAAGCGACACA
GTCGCCACTGCATCCATGGACACTGAAGGCCGTAGTTCCGCCACCAACGA
AAGCAGCGCCCCCTCGAGTCCTCCCCCAACATTGCACGACCTCCCGTACC
TCGTCACCGCTGCCGCCTCATCCGCTCTCCTCTCCCCGACTACCGTCACG
AGCCGCCTTCAACATTTATGTCCGGCGCTGTCCTTGTTTGCCGTGGTGGT
GATACTTTTGGCTGTCGGGGGCATTTTTATGGCGCTCTATCACAGCAAGT
TGATGGGATTGACCACCTGGATGCAAGAGCGGGCGCCGGACTCGGCTTTT
TATTATGGGGCGTTTGTGGTCCTGTGGGTGGTCTTGTGTCTGCCTTCTAC
CTTTGTGGAGTTGTGTGGGGGCTTTATTTTTGGTTTCCCCGTCGCCCTCA
TAACCACCGGGCTTGCCAAACCCATGGGCTGTTGCCTCGCCTTCCTCCTC
GGTCGCTGCGTCGCCGCCGACTCCCTCCGAAACGGCCTTCTCCTCCCTCC
CACGCCCCGAGACCACAGCAGTAGCAGCAACAACAGCAGTAGCAATAGTG
GCAGAAACAATGCTCGTCGGGCCCGTGCACTCTTTTTGGCTATGGAGAGG
CATCCTTGGAAGATGTGCCTTCTTCTCCGCTTCATGTACCTGCCGATCGC
AGTCAAGAACTACGGCATGGCGACCTTACCCTGTCCCTTCCACATCTTCG
CCCTTTGCACACTGGCTGCCTCCTTGCCGTACACTCTTCTGTGGGCACAC
ACCGGGGCCTCGTCTCGTTCGCTTTACGATGTGGTGGAGGGGAGGGGAGG
GAGACACGGAGGAAAGGGGTTGCCGAGGGCCTTGGAGGCTACAGCGGCTG
TTGGGATTGAAGGGGGTAGTAAAAGAGCGCGTGGCACATGTACAGAAGGC
GTTGTCCGACGACAAGAAAGAGGGAAGTAAATGAATCTGGTCTTATCGTG
GCGAGAAAAGAATATAATGACCAAAGCCGGTCATGAAGCGGCATTGCTGG
ACCACCTCCCGGTGGCGGAAGGCGGGGGTGCAGATGCGGAGGAGTACGAG
GATGAAGGAAAAGTGACAAATGGAGGGGGCAAATGCTTGGTAAGTTATTC
AAGCGACACAGTCGCCACTGCATCCATGGACACTGAAGGCCGTAGTTCCG
CCACCAACGAAAGCAGCGCCCCCTCGAGTCCTCCCCCAACATTGCACGAC
CTCCCGTACCTCGTCACCGCTGCCGCCTCATCCGCTCTCCTCTCCCCGAC
TACCGTCACGAGCCGCCTTCAACATTTATGTCCGGCGCTGTCCTTGTTTG
CCGTGGTGGTGATACTTTTGGCTGTCGGGGGCATTTTTATGGCGCTCTAT
CACAGCAAGTTGATGGGATTGACCACCTGGATGCAAGAGCGGGCGCCGGA
CTCGGCTTTTTATTATGGGGCGTTTGTGGTCCTGTGGGTGGTCTTGTGTC
TGCCTTCTACCTTTGTGGAGTTGTGTGGGGGCTTTATTTTTGGTTTCCCC
GTCGCCCTCATAACCACCGGGCTTGCCAAACCCATGGGCTGTTGCCTCGC
CTTCCTCCTCGGTCGCTGCGTCGCCGCCGACTCCCTCCGAAACGGCCTTC
TCCTCCCTCCCACGCCCCGAGACCACAGCAGTAGCAGCAACAACAGCAGT
AGCAATAGTGGCAGAAACAATGCTCGTCGGGCCCGTGCACTCTTTTTGGC
TATGGAGAGGCATCCTTGGAAGATGTGCCTTCTTCTCCGCTTCATGTACC
TGCCGATCGCAGTCAAGAACTACGGCATGGCGACCTTACCCTGTCCCTTC
CACATCTTCGCCCTTTGCACACTGGCTGCCTCCTTGCCGTACACTCTTCT
GTGGGCACACACCGGGGCCTCGTCTCGTTCGCTTTACGATGTGGTGGAGG
GGAGGGGAGGGAGACACGGAGGAAAGGGGTTGCCGAGGGCCTTGGAGGCT
ACAGCGGCTGTTGGGATTGAAGGGGGTAGTAAAAGAGCGCGTGGCACATG
TACAGAAGGCGTTGTCCGACGACAAGAAAGAGGGAAGTAA

Synonyms

Publications