jgi.p|Nanoce1779_2|603660, mRNA_8702 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603660
Unique NamemRNA_8702
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length766
Alignment locationscaffold_27:206837..207602 +

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Properties
Property NameValue
TranscriptId603746
TrackFilteredModels2
ProteinId603660
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:206837..207602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603660gene_8702Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603660mRNA_8702-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8702CDS_8702Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8702 ID=mRNA_8702|Name=jgi.p|Nanoce1779_2|603660|organism=Nannochloropsis oceanica|type=mRNA|length=766bp
GGAGGGGGGTTGGTGTCGCTGAGGTCTTCATGAGAGGTGGGAGGGGCGAC
GCTGCTGCTGCTGCCGCTGGTGGTGGTGGTATTTTCGTCGTCTTTCTTGC
GCATGTCCTTGTTGCTATTGTTGTATTTTATGCTGCTGCTGCATCTGCTG
CCACTACCGCTGCATTTGCTTTCCTCCGCACTCTTCTCCCCATCAATGCT
GCCCCACGTTATCTCCATAGAGGATGAAGTGGAAGGCGCGGGAGGGAGGG
ATGGAGATGCGAGCGTCATGGACACCGCGAGGCTTTGCATGGTGGTAGGA
GGAGGCAATGGCGAAGAAGGCATGGGGGGAGGGGCCGGTGATAAAGTGGC
AGTATGGGCCGGGGCGGGCAGCGCAAACCATGCTGCCAGCGCTTCATCAT
CTTCGTCCGAAGACGTATCTTCCTCCTCCTCCACTTTGACTGCTTGAGCA
GCCGCGGCGGCAGCTGTGGGGGCCTCGTCGAAATAAGCTGACAAACCCAA
CTCATTATCGTAGCGCCGGGTGCGTATTCGAGGGGCAGGGAGGGGCTCGG
GTGGGAGCAGATTGTCTCATCGTCAATCGCTGTCGCTTGAGCTTGCTGCC
GCAGATACCGCCACCCCGGACGGCACTCATGACAAGGCTGCTGCTGCTAT
GTGCTGTGTGGTGTTGAAGGATGGGCAGGGAAGGGGTAAGACAAGGGTGC
ATGTAAATGATGTTGACGATATGGCGTCCAGGCTATCGCTGATCGAGACA
TAAAATCGAGAGATTA
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protein sequence of jgi.p|Nanoce1779_2|603660

>mRNA_8702-protein ID=mRNA_8702-protein|Name=jgi.p|Nanoce1779_2|603660|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MSLLLLLYFMLLLHLLPLPLHLLSSALFSPSMLPHVISIEDEVEGAGGRD
GDASVMDTARLCMVVGGGNGEEGMGGGAGDKVAVWAGAGSANHAASASSS
SSEDVSSSSSTLTA*
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mRNA from alignment at scaffold_27:206837..207602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8702 ID=mRNA_8702|Name=jgi.p|Nanoce1779_2|603660|organism=Nannochloropsis oceanica|type=mRNA|length=766bp|location=Sequence derived from alignment at scaffold_27:206837..207602+ (Nannochloropsis oceanica)
GGAGGGGGGTTGGTGTCGCTGAGGTCTTCATGAGAGGTGGGAGGGGCGAC
GCTGCTGCTGCTGCCGCTGGTGGTGGTGGTATTTTCGTCGTCTTTCTTGC
GCATGTCCTTGTTGCTATTGTTGTATTTTATGCTGCTGCTGCATCTGCTG
CCACTACCGCTGCATTTGCTTTCCTCCGCACTCTTCTCCCCATCAATGCT
GCCCCACGTTATCTCCATAGAGGATGAAGTGGAAGGCGCGGGAGGGAGGG
ATGGAGATGCGAGCGTCATGGACACCGCGAGGCTTTGCATGGTGGTAGGA
GGAGGCAATGGCGAAGAAGGCATGGGGGGAGGGGCCGGTGATAAAGTGGC
AGTATGGGCCGGGGCGGGCAGCGCAAACCATGCTGCCAGCGCTTCATCAT
CTTCGTCCGAAGACGTATCTTCCTCCTCCTCCACTTTGACTGCTTGAGCA
GCCGCGGCGGCAGCTGTGGGGGCCTCGTCGAAATAAGCTGACAAACCCAA
CTCATTATCGTAGCGCCGGGTGCGTATTCGAGGGGCAGGGAGGGGCTCGG
GTGGGAGCAGATTGTCTCATCGTCAATCGCTGTCGCTTGAGCTTGCTGCC
GCAGATACCGCCACCCCGGACGGCACTCATGACAAGGCTGCTGCTGCTAT
GTGCTGTGTGGTGTTGAAGGATGGGCAGGGAAGGGGTAAGACAAGGGTGC
ATGTAAATGATGTTGACGATATGGCGTCCAGGCTATCGCTGATCGAGACA
TAAAATCGAGAGATTA
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Coding sequence (CDS) from alignment at scaffold_27:206837..207602+

>mRNA_8702 ID=mRNA_8702|Name=jgi.p|Nanoce1779_2|603660|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_27:206837..207602+ (Nannochloropsis oceanica)
ATGTCCTTGTTGCTATTGTTGTATTTTATGCTGCTGCTGCATCTGCTGCC
ACTACCGCTGCATTTGCTTTCCTCCGCACTCTTCTCCCCATCAATGCTGC
CCCACGTTATCTCCATAGAGGATGAAGTGGAAGGCGCGGGAGGGAGGGAT
GGAGATGCGAGCGTCATGGACACCGCGAGGCTTTGCATGGTGGTAGGAGG
AGGCAATGGCGAAGAAGGCATGGGGGGAGGGGCCGGTGATAAAGTGGCAG
TATGGGCCGGGGCGGGCAGCGCAAACCATGCTGCCAGCGCTTCATCATCT
TCGTCCGAAGACGTATCTTCCTCCTCCTCCACTTTGACTGCTTGA
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Synonyms
Publications