jgi.p|Nanoce1779_2|603655, mRNA_8700 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603655
Unique NamemRNA_8700
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1165
Alignment locationscaffold_27:204344..205508 -

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Properties
Property NameValue
TranscriptId603741
TrackFilteredModels2
ProteinId603655
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:204344..205508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603655gene_8700Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603655mRNA_8700-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8700CDS_8700Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8700 ID=mRNA_8700|Name=jgi.p|Nanoce1779_2|603655|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp
ACAGCAACACCACACACGCAAGCCTACTTTTTCAATTGCACTCGCGTGTC
AAAGCCCGACCCAAGGCCTTCCTTCAGGAGCAATGTCGCCTCCTCCTCAT
CACTCCCTGTGTGTCACCTTTACCTCGACAACAACCTCGCCCACTTGCGG
CTTTGTCCTTTCCCCGGTTCCCACCGCGTCGTCACTTCAATTGGCACCAT
GCTCGCGCAGAGGACAGCTTCGCGTTTCAACTGCGTGTTGGGCGCAACCA
CAACAACAGCCACCGCAGCAAGCACGCCCGGGCAGCGTCAGCGCCGATGG
CAAAGCGCAAAAAGCCAGCTTCTACAAACGTCCCTCTAAGGCCATTGAGA
TGGGTGGCGGCTTCTTTATCCCCGGCCTTGAAGGGTATAAGCTCCGATTG
GCCACGGCTGTCCTCGTGTTGGTTCTGCTGGCCTTGAATCGCTTTCCCGG
ATACGCCCCCCCAATCTCCCAAAGCACGAGTGAGATAATTGGCGCCGGCG
CGGCCGTCATCCTCCTAGCCCAATCCCTCATTGAGAAGCTCATTACCGAT
TCGGGCTCTGCACCAGAGGAGGATGATGATAGCGACGACGGCAGGGTCAG
CACAAGCAGCACAGGCAGTGGCAGCGGTGGCAGCAGCAGGGTGGGTGGAG
TAGAGGAGGAATGCTTCGGACTGGTAGCACGAGACCCCCAATTGGAAGAC
GACGTCCGATGGGCTGGCTATGCTTTAGATGAAAACCTAGGCTGTCCCTC
CGTGGCCGTTCTACACGGGGAGCAAGGCTTGGTGTACTACCGTCGGCGGT
CGAGCAAAGATGCTACCTCTTCTTCATCTCTCGAGCTCGCCACGGCCTTG
CTGCAGACCTTACCGGTGGGGACCCGCCGAGCCATCGGGATGGGAGACGC
CTTAGCAGCACTAGGAGGGGTGGCAGGAAATAGCGGAGCACAACTGGCGC
AGGTTTTGGGGATGGCAAAGGCTGAGGGTGCGGTGGTGGTGAGGATTGGA
GAGAGGGGGTTGTTGTTGGTGGCGCCCCCGGTGGGAGGGATAATGAGAGA
TCAGGCCGTGTGGGTCGAACGGGCAGCGGCGTTACTCGAGGGGTCGGGTC
GCGGAAGTGAAAGGTTCTAGATGGACGGAAAAGCAACCAAATAAATGAAT
AAATTAGAATGAGGT
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protein sequence of jgi.p|Nanoce1779_2|603655

>mRNA_8700-protein ID=mRNA_8700-protein|Name=jgi.p|Nanoce1779_2|603655|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MSPPPHHSLCVTFTSTTTSPTCGFVLSPVPTASSLQLAPCSRRGQLRVST
ACWAQPQQQPPQQARPGSVSADGKAQKASFYKRPSKAIEMGGGFFIPGLE
GYKLRLATAVLVLVLLALNRFPGYAPPISQSTSEIIGAGAAVILLAQSLI
EKLITDSGSAPEEDDDSDDGRVSTSSTGSGSGGSSRVGGVEEECFGLVAR
DPQLEDDVRWAGYALDENLGCPSVAVLHGEQGLVYYRRRSSKDATSSSSL
ELATALLQTLPVGTRRAIGMGDALAALGGVAGNSGAQLAQVLGMAKAEGA
VVVRIGERGLLLVAPPVGGIMRDQAVWVERAAALLEGSGRGSERF*
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mRNA from alignment at scaffold_27:204344..205508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8700 ID=mRNA_8700|Name=jgi.p|Nanoce1779_2|603655|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at scaffold_27:204344..205508- (Nannochloropsis oceanica)
ACAGCAACACCACACACGCAAGCCTACTTTTTCAATTGCACTCGCGTGTC
AAAGCCCGACCCAAGGCCTTCCTTCAGGAGCAATGTCGCCTCCTCCTCAT
CACTCCCTGTGTGTCACCTTTACCTCGACAACAACCTCGCCCACTTGCGG
CTTTGTCCTTTCCCCGGTTCCCACCGCGTCGTCACTTCAATTGGCACCAT
GCTCGCGCAGAGGACAGCTTCGCGTTTCAACTGCGTGTTGGGCGCAACCA
CAACAACAGCCACCGCAGCAAGCACGCCCGGGCAGCGTCAGCGCCGATGG
CAAAGCGCAAAAAGCCAGCTTCTACAAACGTCCCTCTAAGGCCATTGAGA
TGGGTGGCGGCTTCTTTATCCCCGGCCTTGAAGGGTATAAGCTCCGATTG
GCCACGGCTGTCCTCGTGTTGGTTCTGCTGGCCTTGAATCGCTTTCCCGG
ATACGCCCCCCCAATCTCCCAAAGCACGAGTGAGATAATTGGCGCCGGCG
CGGCCGTCATCCTCCTAGCCCAATCCCTCATTGAGAAGCTCATTACCGAT
TCGGGCTCTGCACCAGAGGAGGATGATGATAGCGACGACGGCAGGGTCAG
CACAAGCAGCACAGGCAGTGGCAGCGGTGGCAGCAGCAGGGTGGGTGGAG
TAGAGGAGGAATGCTTCGGACTGGTAGCACGAGACCCCCAATTGGAAGAC
GACGTCCGATGGGCTGGCTATGCTTTAGATGAAAACCTAGGCTGTCCCTC
CGTGGCCGTTCTACACGGGGAGCAAGGCTTGGTGTACTACCGTCGGCGGT
CGAGCAAAGATGCTACCTCTTCTTCATCTCTCGAGCTCGCCACGGCCTTG
CTGCAGACCTTACCGGTGGGGACCCGCCGAGCCATCGGGATGGGAGACGC
CTTAGCAGCACTAGGAGGGGTGGCAGGAAATAGCGGAGCACAACTGGCGC
AGGTTTTGGGGATGGCAAAGGCTGAGGGTGCGGTGGTGGTGAGGATTGGA
GAGAGGGGGTTGTTGTTGGTGGCGCCCCCGGTGGGAGGGATAATGAGAGA
TCAGGCCGTGTGGGTCGAACGGGCAGCGGCGTTACTCGAGGGGTCGGGTC
GCGGAAGTGAAAGGTTCTAGATGGACGGAAAAGCAACCAAATAAATGAAT
AAATTAGAATGAGGT
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Coding sequence (CDS) from alignment at scaffold_27:204344..205508-

>mRNA_8700 ID=mRNA_8700|Name=jgi.p|Nanoce1779_2|603655|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_27:204344..205508- (Nannochloropsis oceanica)
ATGTCGCCTCCTCCTCATCACTCCCTGTGTGTCACCTTTACCTCGACAAC
AACCTCGCCCACTTGCGGCTTTGTCCTTTCCCCGGTTCCCACCGCGTCGT
CACTTCAATTGGCACCATGCTCGCGCAGAGGACAGCTTCGCGTTTCAACT
GCGTGTTGGGCGCAACCACAACAACAGCCACCGCAGCAAGCACGCCCGGG
CAGCGTCAGCGCCGATGGCAAAGCGCAAAAAGCCAGCTTCTACAAACGTC
CCTCTAAGGCCATTGAGATGGGTGGCGGCTTCTTTATCCCCGGCCTTGAA
GGGTATAAGCTCCGATTGGCCACGGCTGTCCTCGTGTTGGTTCTGCTGGC
CTTGAATCGCTTTCCCGGATACGCCCCCCCAATCTCCCAAAGCACGAGTG
AGATAATTGGCGCCGGCGCGGCCGTCATCCTCCTAGCCCAATCCCTCATT
GAGAAGCTCATTACCGATTCGGGCTCTGCACCAGAGGAGGATGATGATAG
CGACGACGGCAGGGTCAGCACAAGCAGCACAGGCAGTGGCAGCGGTGGCA
GCAGCAGGGTGGGTGGAGTAGAGGAGGAATGCTTCGGACTGGTAGCACGA
GACCCCCAATTGGAAGACGACGTCCGATGGGCTGGCTATGCTTTAGATGA
AAACCTAGGCTGTCCCTCCGTGGCCGTTCTACACGGGGAGCAAGGCTTGG
TGTACTACCGTCGGCGGTCGAGCAAAGATGCTACCTCTTCTTCATCTCTC
GAGCTCGCCACGGCCTTGCTGCAGACCTTACCGGTGGGGACCCGCCGAGC
CATCGGGATGGGAGACGCCTTAGCAGCACTAGGAGGGGTGGCAGGAAATA
GCGGAGCACAACTGGCGCAGGTTTTGGGGATGGCAAAGGCTGAGGGTGCG
GTGGTGGTGAGGATTGGAGAGAGGGGGTTGTTGTTGGTGGCGCCCCCGGT
GGGAGGGATAATGAGAGATCAGGCCGTGTGGGTCGAACGGGCAGCGGCGT
TACTCGAGGGGTCGGGTCGCGGAAGTGAAAGGTTCTAG
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Synonyms
Publications