jgi.p|Nanoce1779_2|642058, mRNA_8697 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|642058
Unique Name	mRNA_8697
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1548
Alignment location	scaffold_27:194614..196161 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	642144
Track	FilteredModels2
ProteinId	642058

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:194614..196161 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642058	gene_8697	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642058	mRNA_8697-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8697	CDS_8697	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:194614..196161+
coding sequence from alignment at scaffold_27:194614..196161+

mRNA sequence

>mRNA_8697 ID=mRNA_8697|Name=jgi.p|Nanoce1779_2|642058|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp
ATGGCAAGCAGCAGCAGCGGTGCGGCCGCTCCAATTAAAGTTGACCCACT
CGTCCTCTCCTACAATGAGCAATCGAGCTTCTTTCCCGTGGCGGCCAATG
TGACCACAGACACCGTTCCCTTATGCCTGTTCCTCGACAAGCAAGGCTGC
AGACAGAAGGAGGACGGTAAGGAGGAAGCTTTTTTTATTGTGCAGGTGCA
TCATGAGCAGGGTGACGCACAAAAAAAGGAGCCACAGGTCTGGACTGCTA
CAATCCCTGCAGGGGAGACTGCTGGAAAGATGGTCACTCTAGCGGAGCTC
TTGCGTAGCCCCGAAACAGTTACAACGCTGGAAGTGATTTCCTCATTATC
AACACAAAAAGAAGACAAGCTCGCAGCGGGGGCGACGTTGACAATTAAGC
AGGTGGTGGAGAAAGGCAAAAAGGTGCTCTTAAAACCGACTGTCTTGCGC
GCCACTGACGCCCCAGTCGGAAGCCTGGCCATGGCCTTGTCACGCACAGC
CACACAACTAGCCCATGCCCACTGTGCCTTGCTAGCGGCAGAAAGACTAA
ACAGTCTATACCAAGAAGAACATGAAAAGATGCAGGGTCTTTTGATGATG
GAGGTGGCAAATAAGGACAGGGTCCAAGAGGAGTTAATGTTCAAATTTAA
TTTGCTTCTCAATACGAAAAGGGCAAAGATTGCCGAGCTTCTGCAACGGG
TAGGGGAGAAGGAGAGGGAGTCAGAGATGACGGATGAAGAGGAGGGAGGG
GGGCAGGAAGAGGAGGAGGAGGGACAGGGCGGAGGCGCTGGGGGAGCAAG
CGGGGGCTGGAAGGGAGCGAAGGCAAAGTTGAGAGCTCAGCGGAAGCTGC
TTTGCGATGCCAGGGAGGAAGGAGGAAATGAGGGAGAGGAGGAAGAGAAT
AGTCACAAGAAAATGCAGGCGAAGAGGAGAAGACTGTCCGCTGCTGCTGC
GTCGGGAACCGGTCGTGGCAGGAGCAAGAGCAACCGTAGTAGCTTGGCGT
TGCCCTTGAAAAAGGTCAAGGTGGAGGGGAGGAGCGAAGAAGATAGGGAG
GGAGGGATGGGGAGCTTATTGTCGGCTGTGAAAGGCACAAAGGAAGTTCT
TGGAGGGATAGATGCGTTGTTGAGGGAGACGAAGAAGAGCGGTGCCAGCA
GTAGCAGCAGCAGTAAGAAGCAGCAGCAGCAGCGGCAGTTGAAGGAAAAG
AGGAAACAGGAGAAACGGGGACTGGACAGTAGCAGCAGCGATTACAATGG
CGTCGATGACAGCTGCAGCAGCAGTGGTGATGATGGTGATGATTTAGTAG
CTTACAGTGCGAAGGGCAAGAGTGAGGAGGGAGGTGAGGGCATTCACAGT
GATGGTAGTGGTGATGACGGTGGTGGTGGAAGAGGAGGAAGACCGGCGAC
AAGAGGCTCTGAGAGAGACGACGATTTTGGGAGGAAGGAGAAAGGGCGAG
GAGGAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGCGTCGCCGCCGCTATG
AATCCAGTTCTGAGGAGGGGTTTGATGGATGATTCGGATTCGGATTAG

protein sequence of jgi.p|Nanoce1779_2|642058

>mRNA_8697-protein ID=mRNA_8697-protein|Name=jgi.p|Nanoce1779_2|642058|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MASSSSGAAAPIKVDPLVLSYNEQSSFFPVAANVTTDTVPLCLFLDKQGC
RQKEDGKEEAFFIVQVHHEQGDAQKKEPQVWTATIPAGETAGKMVTLAEL
LRSPETVTTLEVISSLSTQKEDKLAAGATLTIKQVVEKGKKVLLKPTVLR
ATDAPVGSLAMALSRTATQLAHAHCALLAAERLNSLYQEEHEKMQGLLMM
EVANKDRVQEELMFKFNLLLNTKRAKIAELLQRVGEKERESEMTDEEEGG
GQEEEEEGQGGGAGGASGGWKGAKAKLRAQRKLLCDAREEGGNEGEEEEN
SHKKMQAKRRRLSAAAASGTGRGRSKSNRSSLALPLKKVKVEGRSEEDRE
GGMGSLLSAVKGTKEVLGGIDALLRETKKSGASSSSSSKKQQQQRQLKEK
RKQEKRGLDSSSSDYNGVDDSCSSSGDDGDDLVAYSAKGKSEEGGEGIHS
DGSGDDGGGGRGGRPATRGSERDDDFGRKEKGRGGGRGGGGGGGGVAAAM
NPVLRRGLMDDSDSD*

mRNA from alignment at scaffold_27:194614..196161+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8697 ID=mRNA_8697|Name=jgi.p|Nanoce1779_2|642058|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at scaffold_27:194614..196161+ (Nannochloropsis oceanica)
ATGGCAAGCAGCAGCAGCGGTGCGGCCGCTCCAATTAAAGTTGACCCACT
CGTCCTCTCCTACAATGAGCAATCGAGCTTCTTTCCCGTGGCGGCCAATG
TGACCACAGACACCGTTCCCTTATGCCTGTTCCTCGACAAGCAAGGCTGC
AGACAGAAGGAGGACGGTAAGGAGGAAGCTTTTTTTATTGTGCAGGTGCA
TCATGAGCAGGGTGACGCACAAAAAAAGGAGCCACAGGTCTGGACTGCTA
CAATCCCTGCAGGGGAGACTGCTGGAAAGATGGTCACTCTAGCGGAGCTC
TTGCGTAGCCCCGAAACAGTTACAACGCTGGAAGTGATTTCCTCATTATC
AACACAAAAAGAAGACAAGCTCGCAGCGGGGGCGACGTTGACAATTAAGC
AGGTGGTGGAGAAAGGCAAAAAGGTGCTCTTAAAACCGACTGTCTTGCGC
GCCACTGACGCCCCAGTCGGAAGCCTGGCCATGGCCTTGTCACGCACAGC
CACACAACTAGCCCATGCCCACTGTGCCTTGCTAGCGGCAGAAAGACTAA
ACAGTCTATACCAAGAAGAACATGAAAAGATGCAGGGTCTTTTGATGATG
GAGGTGGCAAATAAGGACAGGGTCCAAGAGGAGTTAATGTTCAAATTTAA
TTTGCTTCTCAATACGAAAAGGGCAAAGATTGCCGAGCTTCTGCAACGGG
TAGGGGAGAAGGAGAGGGAGTCAGAGATGACGGATGAAGAGGAGGGAGGG
GGGCAGGAAGAGGAGGAGGAGGGACAGGGCGGAGGCGCTGGGGGAGCAAG
CGGGGGCTGGAAGGGAGCGAAGGCAAAGTTGAGAGCTCAGCGGAAGCTGC
TTTGCGATGCCAGGGAGGAAGGAGGAAATGAGGGAGAGGAGGAAGAGAAT
AGTCACAAGAAAATGCAGGCGAAGAGGAGAAGACTGTCCGCTGCTGCTGC
GTCGGGAACCGGTCGTGGCAGGAGCAAGAGCAACCGTAGTAGCTTGGCGT
TGCCCTTGAAAAAGGTCAAGGTGGAGGGGAGGAGCGAAGAAGATAGGGAG
GGAGGGATGGGGAGCTTATTGTCGGCTGTGAAAGGCACAAAGGAAGTTCT
TGGAGGGATAGATGCGTTGTTGAGGGAGACGAAGAAGAGCGGTGCCAGCA
GTAGCAGCAGCAGTAAGAAGCAGCAGCAGCAGCGGCAGTTGAAGGAAAAG
AGGAAACAGGAGAAACGGGGACTGGACAGTAGCAGCAGCGATTACAATGG
CGTCGATGACAGCTGCAGCAGCAGTGGTGATGATGGTGATGATTTAGTAG
CTTACAGTGCGAAGGGCAAGAGTGAGGAGGGAGGTGAGGGCATTCACAGT
GATGGTAGTGGTGATGACGGTGGTGGTGGAAGAGGAGGAAGACCGGCGAC
AAGAGGCTCTGAGAGAGACGACGATTTTGGGAGGAAGGAGAAAGGGCGAG
GAGGAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGCGTCGCCGCCGCTATG
AATCCAGTTCTGAGGAGGGGTTTGATGGATGATTCGGATTCGGATTAG

Coding sequence (CDS) from alignment at scaffold_27:194614..196161+

>mRNA_8697 ID=mRNA_8697|Name=jgi.p|Nanoce1779_2|642058|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_27:194614..196161+ (Nannochloropsis oceanica)
ATGGCAAGCAGCAGCAGCGGTGCGGCCGCTCCAATTAAAGTTGACCCACT
CGTCCTCTCCTACAATGAGCAATCGAGCTTCTTTCCCGTGGCGGCCAATG
TGACCACAGACACCGTTCCCTTATGCCTGTTCCTCGACAAGCAAGGCTGC
AGACAGAAGGAGGACGGTAAGGAGGAAGCTTTTTTTATTGTGCAGGTGCA
TCATGAGCAGGGTGACGCACAAAAAAAGGAGCCACAGGTCTGGACTGCTA
CAATCCCTGCAGGGGAGACTGCTGGAAAGATGGTCACTCTAGCGGAGCTC
TTGCGTAGCCCCGAAACAGTTACAACGCTGGAAGTGATTTCCTCATTATC
AACACAAAAAGAAGACAAGCTCGCAGCGGGGGCGACGTTGACAATTAAGC
AGGTGGTGGAGAAAGGCAAAAAGGTGCTCTTAAAACCGACTGTCTTGCGC
GCCACTGACGCCCCAGTCGGAAGCCTGGCCATGGCCTTGTCACGCACAGC
CACACAACTAGCCCATGCCCACTGTGCCTTGCTAGCGGCAGAAAGACTAA
ACAGTCTATACCAAGAAGAACATGAAAAGATGCAGGGTCTTTTGATGATG
GAGGTGGCAAATAAGGACAGGGTCCAAGAGGAGTTAATGTTCAAATTTAA
TTTGCTTCTCAATACGAAAAGGGCAAAGATTGCCGAGCTTCTGCAACGGG
TAGGGGAGAAGGAGAGGGAGTCAGAGATGACGGATGAAGAGGAGGGAGGG
GGGCAGGAAGAGGAGGAGGAGGGACAGGGCGGAGGCGCTGGGGGAGCAAG
CGGGGGCTGGAAGGGAGCGAAGGCAAAGTTGAGAGCTCAGCGGAAGCTGC
TTTGCGATGCCAGGGAGGAAGGAGGAAATGAGGGAGAGGAGGAAGAGAAT
AGTCACAAGAAAATGCAGGCGAAGAGGAGAAGACTGTCCGCTGCTGCTGC
GTCGGGAACCGGTCGTGGCAGGAGCAAGAGCAACCGTAGTAGCTTGGCGT
TGCCCTTGAAAAAGGTCAAGGTGGAGGGGAGGAGCGAAGAAGATAGGGAG
GGAGGGATGGGGAGCTTATTGTCGGCTGTGAAAGGCACAAAGGAAGTTCT
TGGAGGGATAGATGCGTTGTTGAGGGAGACGAAGAAGAGCGGTGCCAGCA
GTAGCAGCAGCAGTAAGAAGCAGCAGCAGCAGCGGCAGTTGAAGGAAAAG
AGGAAACAGGAGAAACGGGGACTGGACAGTAGCAGCAGCGATTACAATGG
CGTCGATGACAGCTGCAGCAGCAGTGGTGATGATGGTGATGATTTAGTAG
CTTACAGTGCGAAGGGCAAGAGTGAGGAGGGAGGTGAGGGCATTCACAGT
GATGGTAGTGGTGATGACGGTGGTGGTGGAAGAGGAGGAAGACCGGCGAC
AAGAGGCTCTGAGAGAGACGACGATTTTGGGAGGAAGGAGAAAGGGCGAG
GAGGAGGAAGAGGAGGAGGAGGAGGGGGAGGAGGCGTCGCCGCCGCTATG
AATCCAGTTCTGAGGAGGGGTTTGATGGATGATTCGGATTCGGATTAG

Synonyms

Publications