jgi.p|Nanoce1779_2|603631, mRNA_8695 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603631
Unique Name	mRNA_8695
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1362
Alignment location	scaffold_27:185023..186808 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603717
Track	FilteredModels2
ProteinId	603631

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:185023..186808 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603631	gene_8695	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603631	mRNA_8695-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8695	CDS_8695	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:185023..186808+
coding sequence from alignment at scaffold_27:185023..186808+

mRNA sequence

>mRNA_8695 ID=mRNA_8695|Name=jgi.p|Nanoce1779_2|603631|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
AGCGAATATCCAACTCAAGCAGCGCATTTCTTAACGACAAATAGCTCTCT
GTGATCGACATACGAAGAGCAGGGCATCGGTCCTCCGAGCAAGAACACCA
AAGCCGCCTCACAAATCGAGGACGACCTACCAACATCGAAAAAATGGGTT
GTGGACCATCTTGCTGTGTGCCTCCACAAGTCATTAAGGCGCTCGAAGCC
CATACCGCCGAAGCCAAAGCTGCCAAATCTGCGCCAATGGCGACAGCACA
GCCTGTTTTGCAAGCTCAGCGTCGTGCAGCCATCATGACCGAAGCCGTCG
CGCAAAAGTGGCTCTTGTCGAACGGAAAGTGTGTGGGTGGAGCTAAGGCT
CGAATGATTTGTCTAGGGTGGGCGGGGAGCAATTCGGGGGTGTTTAAGAA
TTGGGATTTGAAGACGGTGGAGGTGGTCAAGGTGGAGCTGCCGGCACGCA
ACGCCCGCTTCAATGACAAACCGATCCATGACGTCAATCTCCTTGCGAAG
AAAATTGCACAGGCTTGCTCTGTCCTCGGGTATTACGCGTCTCAAATCCC
ACTAGTAATTTTTGGGCATTCATTTGGGGCTATGGTTGGTCTTCATGTGG
CTCGGGTGATGAAGCAGGAGTACAACTATGTGCCGAAGATGTGCGTGTTT
GGGGGATGTCGGCCGTTGCATCGGTGGGGCTTCCCCATGTCCTACTACAA
GGAGGACGATGACGAGATGATCCAGAGCATGGTCGACTGTGGAGGGATGA
CCAAGGAGATGGCTAAGGATAAGCTCCTGATCTCCTCAGTGCTGGCTGGA
ATTAAGATGGACCACCTCTGTATGGACAGATACGTCTTGAACGAGTCCGC
TGAGAAGGTTCACACGCCCCTGTGGGTGATCGGTGGGGTAGATGACCCCC
GTTCTCCTCCCGAGCAACTGCCGGAGTGGGAAAGGTATACCACGTCGGGG
ATTCAGATAAAGACGTTTCCGGGGGGGCATTTCTTTTTGAAGGAGAAGGA
GGCTGACTTGCTGGCGTGGCTGAGCAAGGTGGTGGAGGAGTGAAGGAACC
GTGATGAGAAGATGGACCGAGGTGAAGAGAGGAGTGAGGGAAATGGGGCA
CCATTACATTTCGTAATGATATTTCAGTATGTCCTCTTAGAATTCTGCTG
CAATCGAGTTAAAACCGTAGTATATTGCGTAAACTGGGATTGTGTGGAGT
GTTAATTTTGTCTTATTTGGAAGAAGAGTCCGTCGGGGTTTCAGTATTGG
CGTAGGAATGTTGATGTTTTGCTGAAAAGCGAAGAGATTAGCGAGCGAAG
GCAGTGAAAAGGAAACAATTTATTCTTAAAGTAATGAAAAATGAGCAATT
CGTTGACAAGAA

protein sequence of jgi.p|Nanoce1779_2|603631

>mRNA_8695-protein ID=mRNA_8695-protein|Name=jgi.p|Nanoce1779_2|603631|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MGCGPSCCVPPQVIKALEAHTAEAKAAKSAPMATAQPVLQAQRRAAIMTE
AVAQKWLLSNGKCVGGAKARMICLGWAGSNSGVFKNWDLKTVEVVKVELP
ARNARFNDKPIHDVNLLAKKIAQACSVLGYYASQIPLVIFGHSFGAMVGL
HVARVMKQEYNYVPKMCVFGGCRPLHRWGFPMSYYKEDDDEMIQSMVDCG
GMTKEMAKDKLLISSVLAGIKMDHLCMDRYVLNESAEKVHTPLWVIGGVD
DPRSPPEQLPEWERYTTSGIQIKTFPGGHFFLKEKEADLLAWLSKVVEE*

mRNA from alignment at scaffold_27:185023..186808+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8695 ID=mRNA_8695|Name=jgi.p|Nanoce1779_2|603631|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp|location=Sequence derived from alignment at scaffold_27:185023..186808+ (Nannochloropsis oceanica)
AGCGAATATCCAACTCAAGCAGCGCATTTCTTAACGACAAATAGCTCTCT
GTGATCGACATACGAAGAGCAGGGCATCGGTCCTCCGAGCAAGAACACCA
AAGCCGCCTCACAAATCGAGGACGACCTACCAACATCGAAAAAATGGGTA
AGTGAACATACTGTTTGATTATTTACTCTTCCCTCCCTACCTTCCCTCGG
TAATCCTCGCAATAAAGATGCTCGCTTGCGCAATTGTCCCTACCCTCCCT
TACTTCCTTCCTCCCTCCCTCCCTCCAGGTTGTGGACCATCTTGCTGTGT
GCCTCCACAAGTCATTAAGGCGCTCGAAGCCCATACCGCCGAAGCCAAAG
CTGCCAAATCTGCGCCAATGGCGACAGCACAGCCTGTTTTGCAAGCTCAG
CGTCGTGCAGCCATCATGACCGAAGCCGTCGCGCAAAAGTGGCTCTTGTC
GAACGGAAAGTGTGTGGGTGGAGCTAAGGCTCGAATGATTTGTCTAGGGT
GGGCGGGGAGCAATTCGGGGGTGTTTAAGAATTGGGATTTGAAGACGGTG
GAGGTGGTCAAGGTGGAGCTGCCGGCACGCAACGCCCGCTTCAATGACAA
ACCGATCCATGACGTCAATCTCCTTGCGAAGAAAATTGCACAGGCTTGCT
CTGTCCTCGGGTATTACGCGTCTCAAATCCCACTAGTAATTTTTGGGCAT
TCATTTGGGGCTATGGTTGGTCTTCATGTGGCTCGGGTGATGAAGCAGGA
GTACAACTATGTGCCGAAGATGTGCGTGTTTGGGGGATGTCGGCCGTTGC
ATCGGTACGTGGGTGGTATAAAGGGTAGAGGGGAGTATATGGCAAGAAAA
GATGAGGCATGGGACGAGAACAAAATAAATGTGGACCAGGCAACGCTCCA
AACCATCGTCCATTTTACTCTTTACACTTCAACCTTTCAAAAACCTAGGT
GGGGCTTCCCCATGTCCTACTACAAGGAGGACGATGACGAGATGATCCAG
AGCATGGTCGACTGTGGAGGGATGACCAAGGAGATGGCTAAGGATAAGGT
ATCACGGAGGGAAGGATAGAAAAATCGAGCATGAAAATCATGCAAAAAAG
CTGCTTCAGGGGTGGAGGAGAACAAAAGACACATTCCCTGAAAACGAAAA
TAATCGATAATTACCACACTCTCCCCCATTGACTATCACAAATACAGCTC
CTGATCTCCTCAGTGCTGGCTGGAATTAAGATGGACCACCTCTGTATGGA
CAGATACGTCTTGAACGAGTCCGCTGAGAAGGTTCACACGCCCCTGTGGG
TGATCGGTGGGGTAGATGACCCCCGTTCTCCTCCCGAGCAACTGCCGGAG
TGGGAAAGGTATACCACGTCGGGGATTCAGATAAAGACGTTTCCGGGGGG
GCATTTCTTTTTGAAGGAGAAGGAGGCTGACTTGCTGGCGTGGCTGAGCA
AGGTGGTGGAGGAGTGAAGGAACCGTGATGAGAAGATGGACCGAGGTGAA
GAGAGGAGTGAGGGAAATGGGGCACCATTACATTTCGTAATGATATTTCA
GTATGTCCTCTTAGAATTCTGCTGCAATCGAGTTAAAACCGTAGTATATT
GCGTAAACTGGGATTGTGTGGAGTGTTAATTTTGTCTTATTTGGAAGAAG
AGTCCGTCGGGGTTTCAGTATTGGCGTAGGAATGTTGATGTTTTGCTGAA
AAGCGAAGAGATTAGCGAGCGAAGGCAGTGAAAAGGAAACAATTTATTCT
TAAAGTAATGAAAAATGAGCAATTCGTTGACAAGAA

Coding sequence (CDS) from alignment at scaffold_27:185023..186808+

>mRNA_8695 ID=mRNA_8695|Name=jgi.p|Nanoce1779_2|603631|organism=Nannochloropsis oceanica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_27:185023..186808+ (Nannochloropsis oceanica)
ATGGGTTGTGGACCATCTTGCTGTGTGCCTCCACAAGTCATTAAGGCGCT
CGAAGCCCATACCGCCGAAGCCAAAGCTGCCAAATCTGCGCCAATGGCGA
CAGCACAGCCTGTTTTGCAAGCTCAGCGTCGTGCAGCCATCATGACCGAA
GCCGTCGCGCAAAAGTGGCTCTTGTCGAACGGAAAGTGTGTGGGTGGAGC
TAAGGCTCGAATGATTTGTCTAGGGTGGGCGGGGAGCAATTCGGGGGTGT
TTAAGAATTGGGATTTGAAGACGGTGGAGGTGGTCAAGGTGGAGCTGCCG
GCACGCAACGCCCGCTTCAATGACAAACCGATCCATGACGTCAATCTCCT
TGCGAAGAAAATTGCACAGGCTTGCTCTGTCCTCGGGTATTACGCGTCTC
AAATCCCACTAGTAATTTTTGGGCATTCATTTGGGGCTATGGTTGGTCTT
CATGTGGCTCGGGTGATGAAGCAGGAGTACAACTATGTGCCGAAGATGTG
CGTGTTTGGGGGATGTCGGCCGTTGCATCGGTGGGGCTTCCCCATGTCCT
ACTACAAGGAGGACGATGACGAGATGATCCAGAGCATGGTCGACTGTGGA
GGGATGACCAAGGAGATGGCTAAGGATAAGCTCCTGATCTCCTCAGTGCT
GGCTGGAATTAAGATGGACCACCTCTGTATGGACAGATACGTCTTGAACG
AGTCCGCTGAGAAGGTTCACACGCCCCTGTGGGTGATCGGTGGGGTAGAT
GACCCCCGTTCTCCTCCCGAGCAACTGCCGGAGTGGGAAAGGTATACCAC
GTCGGGGATTCAGATAAAGACGTTTCCGGGGGGGCATTTCTTTTTGAAGG
AGAAGGAGGCTGACTTGCTGGCGTGGCTGAGCAAGGTGGTGGAGGAGTGA
ATGGGTTGTGGACCATCTTGCTGTGTGCCTCCACAAGTCATTAAGGCGCT
CGAAGCCCATACCGCCGAAGCCAAAGCTGCCAAATCTGCGCCAATGGCGA
CAGCACAGCCTGTTTTGCAAGCTCAGCGTCGTGCAGCCATCATGACCGAA
GCCGTCGCGCAAAAGTGGCTCTTGTCGAACGGAAAGTGTGTGGGTGGAGC
TAAGGCTCGAATGATTTGTCTAGGGTGGGCGGGGAGCAATTCGGGGGTGT
TTAAGAATTGGGATTTGAAGACGGTGGAGGTGGTCAAGGTGGAGCTGCCG
GCACGCAACGCCCGCTTCAATGACAAACCGATCCATGACGTCAATCTCCT
TGCGAAGAAAATTGCACAGGCTTGCTCTGTCCTCGGGTATTACGCGTCTC
AAATCCCACTAGTAATTTTTGGGCATTCATTTGGGGCTATGGTTGGTCTT
CATGTGGCTCGGGTGATGAAGCAGGAGTACAACTATGTGCCGAAGATGTG
CGTGTTTGGGGGATGTCGGCCGTTGCATCGGTGGGGCTTCCCCATGTCCT
ACTACAAGGAGGACGATGACGAGATGATCCAGAGCATGGTCGACTGTGGA
GGGATGACCAAGGAGATGGCTAAGGATAAGCTCCTGATCTCCTCAGTGCT
GGCTGGAATTAAGATGGACCACCTCTGTATGGACAGATACGTCTTGAACG
AGTCCGCTGAGAAGGTTCACACGCCCCTGTGGGTGATCGGTGGGGTAGAT
GACCCCCGTTCTCCTCCCGAGCAACTGCCGGAGTGGGAAAGGTATACCAC
GTCGGGGATTCAGATAAAGACGTTTCCGGGGGGGCATTTCTTTTTGAAGG
AGAAGGAGGCTGACTTGCTGGCGTGGCTGAGCAAGGTGGTGGAGGAGTGA
ATGGGTTGTGGACCATCTTGCTGTGTGCCTCCACAAGTCATTAAGGCGCT
CGAAGCCCATACCGCCGAAGCCAAAGCTGCCAAATCTGCGCCAATGGCGA
CAGCACAGCCTGTTTTGCAAGCTCAGCGTCGTGCAGCCATCATGACCGAA
GCCGTCGCGCAAAAGTGGCTCTTGTCGAACGGAAAGTGTGTGGGTGGAGC
TAAGGCTCGAATGATTTGTCTAGGGTGGGCGGGGAGCAATTCGGGGGTGT
TTAAGAATTGGGATTTGAAGACGGTGGAGGTGGTCAAGGTGGAGCTGCCG
GCACGCAACGCCCGCTTCAATGACAAACCGATCCATGACGTCAATCTCCT
TGCGAAGAAAATTGCACAGGCTTGCTCTGTCCTCGGGTATTACGCGTCTC
AAATCCCACTAGTAATTTTTGGGCATTCATTTGGGGCTATGGTTGGTCTT
CATGTGGCTCGGGTGATGAAGCAGGAGTACAACTATGTGCCGAAGATGTG
CGTGTTTGGGGGATGTCGGCCGTTGCATCGGTGGGGCTTCCCCATGTCCT
ACTACAAGGAGGACGATGACGAGATGATCCAGAGCATGGTCGACTGTGGA
GGGATGACCAAGGAGATGGCTAAGGATAAGCTCCTGATCTCCTCAGTGCT
GGCTGGAATTAAGATGGACCACCTCTGTATGGACAGATACGTCTTGAACG
AGTCCGCTGAGAAGGTTCACACGCCCCTGTGGGTGATCGGTGGGGTAGAT
GACCCCCGTTCTCCTCCCGAGCAACTGCCGGAGTGGGAAAGGTATACCAC
GTCGGGGATTCAGATAAAGACGTTTCCGGGGGGGCATTTCTTTTTGAAGG
AGAAGGAGGCTGACTTGCTGGCGTGGCTGAGCAAGGTGGTGGAGGAGTGA
ATGGGTTGTGGACCATCTTGCTGTGTGCCTCCACAAGTCATTAAGGCGCT
CGAAGCCCATACCGCCGAAGCCAAAGCTGCCAAATCTGCGCCAATGGCGA
CAGCACAGCCTGTTTTGCAAGCTCAGCGTCGTGCAGCCATCATGACCGAA
GCCGTCGCGCAAAAGTGGCTCTTGTCGAACGGAAAGTGTGTGGGTGGAGC
TAAGGCTCGAATGATTTGTCTAGGGTGGGCGGGGAGCAATTCGGGGGTGT
TTAAGAATTGGGATTTGAAGACGGTGGAGGTGGTCAAGGTGGAGCTGCCG
GCACGCAACGCCCGCTTCAATGACAAACCGATCCATGACGTCAATCTCCT
TGCGAAGAAAATTGCACAGGCTTGCTCTGTCCTCGGGTATTACGCGTCTC
AAATCCCACTAGTAATTTTTGGGCATTCATTTGGGGCTATGGTTGGTCTT
CATGTGGCTCGGGTGATGAAGCAGGAGTACAACTATGTGCCGAAGATGTG
CGTGTTTGGGGGATGTCGGCCGTTGCATCGGTGGGGCTTCCCCATGTCCT
ACTACAAGGAGGACGATGACGAGATGATCCAGAGCATGGTCGACTGTGGA
GGGATGACCAAGGAGATGGCTAAGGATAAGCTCCTGATCTCCTCAGTGCT
GGCTGGAATTAAGATGGACCACCTCTGTATGGACAGATACGTCTTGAACG
AGTCCGCTGAGAAGGTTCACACGCCCCTGTGGGTGATCGGTGGGGTAGAT
GACCCCCGTTCTCCTCCCGAGCAACTGCCGGAGTGGGAAAGGTATACCAC
GTCGGGGATTCAGATAAAGACGTTTCCGGGGGGGCATTTCTTTTTGAAGG
AGAAGGAGGCTGACTTGCTGGCGTGGCTGAGCAAGGTGGTGGAGGAGTGA

Synonyms

Publications