jgi.p|Nanoce1779_2|603627, mRNA_8694 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603627
Unique Name	mRNA_8694
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2550
Alignment location	scaffold_27:181507..184056 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603713
Track	FilteredModels2
ProteinId	603627

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:181507..184056 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603627	gene_8694	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603627	mRNA_8694-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8694	CDS_8694	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:181507..184056-
coding sequence from alignment at scaffold_27:181507..184056-

mRNA sequence

>mRNA_8694 ID=mRNA_8694|Name=jgi.p|Nanoce1779_2|603627|organism=Nannochloropsis oceanica|type=mRNA|length=2550bp
CTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTATGTTGTCTCAAAATCGG
AAGCGCAAATCTAGTAAAGGAGAGGAGACGATGCCGGAGGACGGGAGACA
GGAAGATAAAGCAGCAGCAGCAGCGGAAGGGCAGGGTGCCCGTTTCTGGT
TTGAGGAACATGATGAAAAGTTGCGGGCAGCTGTCATGGTGGAGGGTCCT
CGGAACTGGAAGAAGATCGCTGAAGATTATTTTGGGAATGAATACAACGA
TACGCAATGCTTGAATCGGTGGTTCAAGGTCTTACGGCCAGGGTTGATTA
AGGGCCCATGGACAGTGGAGGAGGACGCGATTATCGTTCAATGTATGCAA
AGCGGTTTGACGAAATGGGCTGACATTGCAGGGCGTATCCCTGGACGACT
AGGAAAGCAATGCCGGGAACGTTGGTTGAATCACCTGGACCCGAATGTGA
AAAAAGATGCCTGGACTTTTGAAGAAGACGCCATCCTCGTCGAAGGTCAG
AAGCGTTATGGTAATGCTTGGGCTACGATTGCAAAATTGTTGCCCGGTAG
GTCAGAGAATGCAATCAAGAATAGGTGGAATTCAGCAACACACTCTAAGA
TGCGACACGCACGAGGCCGCCCTGCTACGGGCTCTGCAGTTGCCGGCGCC
ACTGGCTGTGAACGCTCTGCAGTTCCCCGTCCCTATCCCTCTCCTCCAGC
ATGCCCTCAGTGGGACTATGCTCTCGAGGTTTCCATGGTACAATCCTACT
GTAGACATCTCCTCTCCTCATCGTCTTCCTCTAAAGCAGCCGCAGAACCA
GCAGCAGCAGCAGCAGCAGCAGCACCGGCTGCCTCACCAGCAGCGACACC
AGCAGCGACACCAGCAGCGTGGAACTATACCTCTCCGACGGCCAAGATGA
TGACAGCCCCCTTAGAAGAAATCTCGGATTTTATCCCTTGTGTTATGAAT
GCCCTACAGCAAGCCAAGCCCACGACATATGGTTTCATCGTCTCCTCATC
CCCCTCTTCCTCCTCCTCGCCCTTCCCATCCTTCCATCTAAGTTCCTCTC
AGCTGAAGTCTCTGCATGCCCGTCTTTGGGTAGCCCTAGAAAAAGAGGCT
CATCGCCAAGGACCCGACAGCTGTCTCTACCACACTGTCTCTCGAGCAAC
CAATAAGAAAAGGATGAAGCAGTCGACATTCCTGGAAGCATCTGATGCCG
GGACTTTAACGTGTTCGTCTCTCAGCGTAGGTGGAACAGGGCGCCAAAAG
CACGAATCGTCGACAGTCCTTTCTGCAGCCGCCGCACCAGGCACCTTCAC
TTCTCCTCTCGTGGCAGCTCCATCAAGCAAGGTGACGACGGTAACAGAGA
ATTGCAAGGAAACAGAGGCTGCAGTGTCCGTCGTGCTTGGACAAGGAAGG
CCGAAGGACGTGTGCGAGGCTGCTGCACCTCCTGCTGCTCGTTCGCCCCC
TCCTCCTCGAAAGCAGCAGCAAGCAGCAGAGGCCGTGTCATTTCTCCGTG
ATCATCGTCATCCCCGGCCCCAGCAGCAGCACCACCACGGTCGGCCTCAT
GATGAGGAGGATAGTATATCTTCCATTTCGGCAATGAGCTCAGAAGCCAG
CGTTGGGGACACGGAAGATGAGCAAGAGGAAACCAGTCCCAGACCAAAGG
CACACATTTCTCTTACTGTCCCCCATAATGCCGCCAACCCCGCACCTTCC
CACTCCTCTCCCTCCTCTTCTTCTTCGTTCTCGGCCGTGGAGGAGCACAG
TGGATTGCAAAGCCTGGCTTCGGCTGTCAGCTCTCTCTGTACCCCCATGT
CCATGGATGGCAACACCGATCACGGCCGCGGCAGCATTAGCACCTGTAAG
CTTGCCTTATCATCCTTTCCCCAAAAGAAGAAGAAGAAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACTGCAGTCTGGAGCGTCAAAGCCTTTGTTGGTGC
CCTCTCAGTGCATGCGTGATGTCATTTCCTTGCTCTTCTTTGCGGTGCGA
CAGGAAGAGGATGGGGCGCGTCGAGGACTGCTTCAAGACGCTCTCCATGC
GGCCACTCAGGAGGTACCGGCCATGGTAAATTTGGTGGAGGGAGTACTAG
GATGTACTGGTAGTGGTTTTAGCTTGACGAATGAGGATGATCGTTTGTTC
TTGTTGGACCACCTCATGACGGCGACTCATAGGGGGGTGTTTGGACCTAG
GAGCCACCATTGGTAGCATAGAGGAGGATGTCGATGGCGGAAGATACGTG
CCGTGATAGGGTGTAGTAGTGGTGGTAGTTGAGTCTATTGATTATTTTTT
ATTGCTATATTTATGAGCAAAGAGAATATGTAAGGCACCGCACACGTGCA
TTAGATCTATACAAGCAAGCAAGGAGTATGTGCGAGGATGCGTGTAGAAA
CATAGGAAAGGATCTCTTCAGTGAAGGGAGAGTTTTCTCCCTCTGGTCAC
TGTTGAAAAGAAAATGACCCAAGCCCCGTGTGCACTTAGTCGTCCGCCAA
TCCACAGATAAATCACGTAAAAGAAAAAAAATGTGACCCGCAATTCTGGT

protein sequence of jgi.p|Nanoce1779_2|603627

>mRNA_8694-protein ID=mRNA_8694-protein|Name=jgi.p|Nanoce1779_2|603627|organism=Nannochloropsis oceanica|type=polypeptide|length=728bp
MLSQNRKRKSSKGEETMPEDGRQEDKAAAAAEGQGARFWFEEHDEKLRAA
VMVEGPRNWKKIAEDYFGNEYNDTQCLNRWFKVLRPGLIKGPWTVEEDAI
IVQCMQSGLTKWADIAGRIPGRLGKQCRERWLNHLDPNVKKDAWTFEEDA
ILVEGQKRYGNAWATIAKLLPGRSENAIKNRWNSATHSKMRHARGRPATG
SAVAGATGCERSAVPRPYPSPPACPQWDYALEVSMVQSYCRHLLSSSSSS
KAAAEPAAAAAAAAPAASPAATPAATPAAWNYTSPTAKMMTAPLEEISDF
IPCVMNALQQAKPTTYGFIVSSSPSSSSSPFPSFHLSSSQLKSLHARLWV
ALEKEAHRQGPDSCLYHTVSRATNKKRMKQSTFLEASDAGTLTCSSLSVG
GTGRQKHESSTVLSAAAAPGTFTSPLVAAPSSKVTTVTENCKETEAAVSV
VLGQGRPKDVCEAAAPPAARSPPPPRKQQQAAEAVSFLRDHRHPRPQQQH
HHGRPHDEEDSISSISAMSSEASVGDTEDEQEETSPRPKAHISLTVPHNA
ANPAPSHSSPSSSSSFSAVEEHSGLQSLASAVSSLCTPMSMDGNTDHGRG
SISTCKLALSSFPQKKKKKQQQQQQQQQLQSGASKPLLVPSQCMRDVISL
LFFAVRQEEDGARRGLLQDALHAATQEVPAMVNLVEGVLGCTGSGFSLTN
EDDRLFLLDHLMTATHRGVFGPRSHHW*

mRNA from alignment at scaffold_27:181507..184056-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8694 ID=mRNA_8694|Name=jgi.p|Nanoce1779_2|603627|organism=Nannochloropsis oceanica|type=mRNA|length=2550bp|location=Sequence derived from alignment at scaffold_27:181507..184056- (Nannochloropsis oceanica)
CTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTATGTTGTCTCAAAATCGG
AAGCGCAAATCTAGTAAAGGAGAGGAGACGATGCCGGAGGACGGGAGACA
GGAAGATAAAGCAGCAGCAGCAGCGGAAGGGCAGGGTGCCCGTTTCTGGT
TTGAGGAACATGATGAAAAGTTGCGGGCAGCTGTCATGGTGGAGGGTCCT
CGGAACTGGAAGAAGATCGCTGAAGATTATTTTGGGAATGAATACAACGA
TACGCAATGCTTGAATCGGTGGTTCAAGGTCTTACGGCCAGGGTTGATTA
AGGGCCCATGGACAGTGGAGGAGGACGCGATTATCGTTCAATGTATGCAA
AGCGGTTTGACGAAATGGGCTGACATTGCAGGGCGTATCCCTGGACGACT
AGGAAAGCAATGCCGGGAACGTTGGTTGAATCACCTGGACCCGAATGTGA
AAAAAGATGCCTGGACTTTTGAAGAAGACGCCATCCTCGTCGAAGGTCAG
AAGCGTTATGGTAATGCTTGGGCTACGATTGCAAAATTGTTGCCCGGTAG
GTCAGAGAATGCAATCAAGAATAGGTGGAATTCAGCAACACACTCTAAGA
TGCGACACGCACGAGGCCGCCCTGCTACGGGCTCTGCAGTTGCCGGCGCC
ACTGGCTGTGAACGCTCTGCAGTTCCCCGTCCCTATCCCTCTCCTCCAGC
ATGCCCTCAGTGGGACTATGCTCTCGAGGTTTCCATGGTACAATCCTACT
GTAGACATCTCCTCTCCTCATCGTCTTCCTCTAAAGCAGCCGCAGAACCA
GCAGCAGCAGCAGCAGCAGCAGCACCGGCTGCCTCACCAGCAGCGACACC
AGCAGCGACACCAGCAGCGTGGAACTATACCTCTCCGACGGCCAAGATGA
TGACAGCCCCCTTAGAAGAAATCTCGGATTTTATCCCTTGTGTTATGAAT
GCCCTACAGCAAGCCAAGCCCACGACATATGGTTTCATCGTCTCCTCATC
CCCCTCTTCCTCCTCCTCGCCCTTCCCATCCTTCCATCTAAGTTCCTCTC
AGCTGAAGTCTCTGCATGCCCGTCTTTGGGTAGCCCTAGAAAAAGAGGCT
CATCGCCAAGGACCCGACAGCTGTCTCTACCACACTGTCTCTCGAGCAAC
CAATAAGAAAAGGATGAAGCAGTCGACATTCCTGGAAGCATCTGATGCCG
GGACTTTAACGTGTTCGTCTCTCAGCGTAGGTGGAACAGGGCGCCAAAAG
CACGAATCGTCGACAGTCCTTTCTGCAGCCGCCGCACCAGGCACCTTCAC
TTCTCCTCTCGTGGCAGCTCCATCAAGCAAGGTGACGACGGTAACAGAGA
ATTGCAAGGAAACAGAGGCTGCAGTGTCCGTCGTGCTTGGACAAGGAAGG
CCGAAGGACGTGTGCGAGGCTGCTGCACCTCCTGCTGCTCGTTCGCCCCC
TCCTCCTCGAAAGCAGCAGCAAGCAGCAGAGGCCGTGTCATTTCTCCGTG
ATCATCGTCATCCCCGGCCCCAGCAGCAGCACCACCACGGTCGGCCTCAT
GATGAGGAGGATAGTATATCTTCCATTTCGGCAATGAGCTCAGAAGCCAG
CGTTGGGGACACGGAAGATGAGCAAGAGGAAACCAGTCCCAGACCAAAGG
CACACATTTCTCTTACTGTCCCCCATAATGCCGCCAACCCCGCACCTTCC
CACTCCTCTCCCTCCTCTTCTTCTTCGTTCTCGGCCGTGGAGGAGCACAG
TGGATTGCAAAGCCTGGCTTCGGCTGTCAGCTCTCTCTGTACCCCCATGT
CCATGGATGGCAACACCGATCACGGCCGCGGCAGCATTAGCACCTGTAAG
CTTGCCTTATCATCCTTTCCCCAAAAGAAGAAGAAGAAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACTGCAGTCTGGAGCGTCAAAGCCTTTGTTGGTGC
CCTCTCAGTGCATGCGTGATGTCATTTCCTTGCTCTTCTTTGCGGTGCGA
CAGGAAGAGGATGGGGCGCGTCGAGGACTGCTTCAAGACGCTCTCCATGC
GGCCACTCAGGAGGTACCGGCCATGGTAAATTTGGTGGAGGGAGTACTAG
GATGTACTGGTAGTGGTTTTAGCTTGACGAATGAGGATGATCGTTTGTTC
TTGTTGGACCACCTCATGACGGCGACTCATAGGGGGGTGTTTGGACCTAG
GAGCCACCATTGGTAGCATAGAGGAGGATGTCGATGGCGGAAGATACGTG
CCGTGATAGGGTGTAGTAGTGGTGGTAGTTGAGTCTATTGATTATTTTTT
ATTGCTATATTTATGAGCAAAGAGAATATGTAAGGCACCGCACACGTGCA
TTAGATCTATACAAGCAAGCAAGGAGTATGTGCGAGGATGCGTGTAGAAA
CATAGGAAAGGATCTCTTCAGTGAAGGGAGAGTTTTCTCCCTCTGGTCAC
TGTTGAAAAGAAAATGACCCAAGCCCCGTGTGCACTTAGTCGTCCGCCAA
TCCACAGATAAATCACGTAAAAGAAAAAAAATGTGACCCGCAATTCTGGT

Coding sequence (CDS) from alignment at scaffold_27:181507..184056-

>mRNA_8694 ID=mRNA_8694|Name=jgi.p|Nanoce1779_2|603627|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_27:181507..184056- (Nannochloropsis oceanica)
ATGTTGTCTCAAAATCGGAAGCGCAAATCTAGTAAAGGAGAGGAGACGAT
GCCGGAGGACGGGAGACAGGAAGATAAAGCAGCAGCAGCAGCGGAAGGGC
AGGGTGCCCGTTTCTGGTTTGAGGAACATGATGAAAAGTTGCGGGCAGCT
GTCATGGTGGAGGGTCCTCGGAACTGGAAGAAGATCGCTGAAGATTATTT
TGGGAATGAATACAACGATACGCAATGCTTGAATCGGTGGTTCAAGGTCT
TACGGCCAGGGTTGATTAAGGGCCCATGGACAGTGGAGGAGGACGCGATT
ATCGTTCAATGTATGCAAAGCGGTTTGACGAAATGGGCTGACATTGCAGG
GCGTATCCCTGGACGACTAGGAAAGCAATGCCGGGAACGTTGGTTGAATC
ACCTGGACCCGAATGTGAAAAAAGATGCCTGGACTTTTGAAGAAGACGCC
ATCCTCGTCGAAGGTCAGAAGCGTTATGGTAATGCTTGGGCTACGATTGC
AAAATTGTTGCCCGGTAGGTCAGAGAATGCAATCAAGAATAGGTGGAATT
CAGCAACACACTCTAAGATGCGACACGCACGAGGCCGCCCTGCTACGGGC
TCTGCAGTTGCCGGCGCCACTGGCTGTGAACGCTCTGCAGTTCCCCGTCC
CTATCCCTCTCCTCCAGCATGCCCTCAGTGGGACTATGCTCTCGAGGTTT
CCATGGTACAATCCTACTGTAGACATCTCCTCTCCTCATCGTCTTCCTCT
AAAGCAGCCGCAGAACCAGCAGCAGCAGCAGCAGCAGCAGCACCGGCTGC
CTCACCAGCAGCGACACCAGCAGCGACACCAGCAGCGTGGAACTATACCT
CTCCGACGGCCAAGATGATGACAGCCCCCTTAGAAGAAATCTCGGATTTT
ATCCCTTGTGTTATGAATGCCCTACAGCAAGCCAAGCCCACGACATATGG
TTTCATCGTCTCCTCATCCCCCTCTTCCTCCTCCTCGCCCTTCCCATCCT
TCCATCTAAGTTCCTCTCAGCTGAAGTCTCTGCATGCCCGTCTTTGGGTA
GCCCTAGAAAAAGAGGCTCATCGCCAAGGACCCGACAGCTGTCTCTACCA
CACTGTCTCTCGAGCAACCAATAAGAAAAGGATGAAGCAGTCGACATTCC
TGGAAGCATCTGATGCCGGGACTTTAACGTGTTCGTCTCTCAGCGTAGGT
GGAACAGGGCGCCAAAAGCACGAATCGTCGACAGTCCTTTCTGCAGCCGC
CGCACCAGGCACCTTCACTTCTCCTCTCGTGGCAGCTCCATCAAGCAAGG
TGACGACGGTAACAGAGAATTGCAAGGAAACAGAGGCTGCAGTGTCCGTC
GTGCTTGGACAAGGAAGGCCGAAGGACGTGTGCGAGGCTGCTGCACCTCC
TGCTGCTCGTTCGCCCCCTCCTCCTCGAAAGCAGCAGCAAGCAGCAGAGG
CCGTGTCATTTCTCCGTGATCATCGTCATCCCCGGCCCCAGCAGCAGCAC
CACCACGGTCGGCCTCATGATGAGGAGGATAGTATATCTTCCATTTCGGC
AATGAGCTCAGAAGCCAGCGTTGGGGACACGGAAGATGAGCAAGAGGAAA
CCAGTCCCAGACCAAAGGCACACATTTCTCTTACTGTCCCCCATAATGCC
GCCAACCCCGCACCTTCCCACTCCTCTCCCTCCTCTTCTTCTTCGTTCTC
GGCCGTGGAGGAGCACAGTGGATTGCAAAGCCTGGCTTCGGCTGTCAGCT
CTCTCTGTACCCCCATGTCCATGGATGGCAACACCGATCACGGCCGCGGC
AGCATTAGCACCTGTAAGCTTGCCTTATCATCCTTTCCCCAAAAGAAGAA
GAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCAGTCTGGAGCGT
CAAAGCCTTTGTTGGTGCCCTCTCAGTGCATGCGTGATGTCATTTCCTTG
CTCTTCTTTGCGGTGCGACAGGAAGAGGATGGGGCGCGTCGAGGACTGCT
TCAAGACGCTCTCCATGCGGCCACTCAGGAGGTACCGGCCATGGTAAATT
TGGTGGAGGGAGTACTAGGATGTACTGGTAGTGGTTTTAGCTTGACGAAT
GAGGATGATCGTTTGTTCTTGTTGGACCACCTCATGACGGCGACTCATAG
GGGGGTGTTTGGACCTAGGAGCCACCATTGGTAG

Synonyms

Publications