jgi.p|Nanoce1779_2|215492, mRNA_8692 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|215492
Unique NamemRNA_8692
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length603
Alignment locationscaffold_27:179681..180341 -

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Properties
Property NameValue
TranscriptId215578
TrackFilteredModels2
ProteinId215492
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:179681..180341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|215492gene_8692Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|215492mRNA_8692-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8692CDS_8692Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8692 ID=mRNA_8692|Name=jgi.p|Nanoce1779_2|215492|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
CTCGCACAGATAGATAATGTGGTCTTTCACCCTAGTGAGCCGCGGGTCGT
CGCTGTGCTCGACTGGGAGCTTTCTACCCTTGGGCATCCCATGGCCGACC
TCGCCAATCTCTCAATGATGTTTTTTGTCCCTTCGGTCCCTCACTCCCCG
GTCTCGGGCTTGCTAGGGCTAGAGTTAGACCAGTTAGGCATCCCAGATGA
AGAGGATTTGGTGAAAGAGTACTGCCAGCTGGTAGGGAGGAAGCCTCCGG
GGAGGGAGTGGAGGTTCTACACGGCCTTCTTGTTCTTCAAGAATGTGGTG
GTCTTGCAAGGGGTCGAGGCGAGAAGGCGACAGGGCGTGGCCTCATCAAA
GCTGGCTGTGAAACTTCTAGATCTAGCTCCGATTCTGGTGCAGATTGCGG
CACAGCATTTGGAGGAGGAATTAGAGTAAGCAACACAGCAGGAGTAGCAG
AAGGAGCAAACTTTCCTTCTCCACACCTTCAAGAACTACCACAAGGACAA
GTCGACGGTATCTCGACCGTAGTCTTTGACTGGGGCGGGGTCCTGACCTC
CCTCTCCCCCCTCTCCTCTATTCGCGACTTCGAAGCCTCTCACAACCTCC
CCA
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protein sequence of jgi.p|Nanoce1779_2|215492

>mRNA_8692-protein ID=mRNA_8692-protein|Name=jgi.p|Nanoce1779_2|215492|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MADLANLSMMFFVPSVPHSPVSGLLGLELDQLGIPDEEDLVKEYCQLVGR
KPPGREWRFYTAFLFFKNVVVLQGVEARRRQGVASSKLAVKLLDLAPILV
QIAAQHLEEELE*
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mRNA from alignment at scaffold_27:179681..180341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8692 ID=mRNA_8692|Name=jgi.p|Nanoce1779_2|215492|organism=Nannochloropsis oceanica|type=mRNA|length=661bp|location=Sequence derived from alignment at scaffold_27:179681..180341- (Nannochloropsis oceanica)
CTCGCACAGATAGATAATGTGGTCTTTCACCCTAGTGAGCCGCGGGTCGT
CGCTGTGCTCGACTGGGAGCTTTCTACCCTTGGGCATCCCATGGCCGACC
TCGCCAATCTCTCAATGATGTTTTTTGTCCCTTCGGTCCCTCACTCCCCG
GTCTCGGGCTTGCTAGGGCTAGAGTTAGACCAGTTAGGCATCCCAGATGA
AGAGGATTTGGTGAAAGAGTACTGCCAGCTGGTAGGGAGGAAGCCTCCGG
GGAGGGAGTGGAGGTTCTACACGGCCTTCTTGTTCTTCAAGAATGTGGTG
GTCTTGCAAGGGGTCGAGGCGAGAAGGCGACAGGGCGTGGCCTCATCAAA
GCTGGCTGTGAAACTTCTAGATCTAGCTCCGATTCTGGTGCAGATTGCGG
CACAGCATTTGGAGGAGGCGCAAGAAGCTGGAGGAGGAGGAGGAGGAGAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAATTAGAGTAAGCAACACAGCAGG
AGTAGCAGAAGGAGCAAACTTTCCTTCTCCACACCTTCAAGAACTACCAC
AAGGACAAGTCGACGGTATCTCGACCGTAGTCTTTGACTGGGGCGGGGTC
CTGACCTCCCTCTCCCCCCTCTCCTCTATTCGCGACTTCGAAGCCTCTCA
CAACCTCCCCA
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Coding sequence (CDS) from alignment at scaffold_27:179681..180341-

>mRNA_8692 ID=mRNA_8692|Name=jgi.p|Nanoce1779_2|215492|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_27:179681..180341- (Nannochloropsis oceanica)
GAATTAGAGTAAATGGCCGACCTCGCCAATCTCTCAATGATGTTTTTTGT
CCCTTCGGTCCCTCACTCCCCGGTCTCGGGCTTGCTAGGGCTAGAGTTAG
ACCAGTTAGGCATCCCAGATGAAGAGGATTTGGTGAAAGAGTACTGCCAG
CTGGTAGGGAGGAAGCCTCCGGGGAGGGAGTGGAGGTTCTACACGGCCTT
CTTGTTCTTCAAGAATGTGGTGGTCTTGCAAGGGGTCGAGGCGAGAAGGC
GACAGGGCGTGGCCTCATCAAAGCTGGCTGTGAAACTTCTAGATCTAGCT
CCGATTCTGGTGCAGATTGCGGCACAGCATTTGGAGGAGGAATTAGAGTA
AATGGCCGACCTCGCCAATCTCTCAATGATGTTTTTTGTCCCTTCGGTCC
CTCACTCCCCGGTCTCGGGCTTGCTAGGGCTAGAGTTAGACCAGTTAGGC
ATCCCAGATGAAGAGGATTTGGTGAAAGAGTACTGCCAGCTGGTAGGGAG
GAAGCCTCCGGGGAGGGAGTGGAGGTTCTACACGGCCTTCTTGTTCTTCA
AGAATGTGGTGGTCTTGCAAGGGGTCGAGGCGAGAAGGCGACAGGGCGTG
GCCTCATCAAAGCTGGCTGTGAAACTTCTAGATCTAGCTCCGATTCTGGT
GCAGATTGCGGCACAGCATTTGGAGGAG
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Synonyms
Publications