jgi.p|Nanoce1779_2|603624, mRNA_8691 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603624
Unique NamemRNA_8691
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1083
Alignment locationscaffold_27:178866..179948 -

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Properties
Property NameValue
TranscriptId603710
TrackFilteredModels2
ProteinId603624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:178866..179948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603624gene_8691Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603624mRNA_8691-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8691CDS_8691Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8691 ID=mRNA_8691|Name=jgi.p|Nanoce1779_2|603624|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ATTGCGGCACAGCATTTGGAGGAGGCGCAAGAAGCTGGAGGAGGAGGAGG
AGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAATTAGAGTAAGCAACA
CAGCAGGAGTAGCAGAAGGAGCAAACTTTCCTTCTCCACACCTTCAAGAA
CTACCACAAGGACAAGTCGACGGTATCTCGACCGTAGTCTTTGACTGGGG
CGGGGTCCTGACCTCCCTCTCCCCCCTCTCCTCTATTCGCGACTTCGAAG
CCTCTCACAACCTCCCCAAGGGCTACATAAGTATCGCCATCCACGCAGCA
GGCGACGCCCACGGCCTGTTCCAACGGGTAGAGCGAGGCGAATTGCCTCT
AGATGACTCGTCGCTGCGAGCTTGGGAGGTTGAACTAACCTCTCTCAAGT
CCCATCAAGCTTATGCTGCAGTAGCCGAACGTTTCTCAGGAATGAAAGCG
CAAGATCTTCCCTCCTCTTTTTTCCCCCGTCGTCTCGATACCCGTTCCAT
GTTCCGGCATATTATCGAGGCTTCTGTCACAATAGACCCAAGCATGCTTG
CCGCTGTGCGGGCCCTGCGTGCCGCCGGTTTTCGAACAGCAGTACTGACA
AATGATTTTCGAGTCGCCCCTGGTGTTTTTTCTTCAGCTCACGAGAGGGA
AGCTTGGCTATGGGCACGGTTGGACATTATGGGGCGTGTGCTGAATGATC
GTAGCTTGTTTGAGGTCGTCGTGTCGTCGGCGGCGACCCGGGCCCGTAAG
CCGGAGCAGCGTGTGTATGAAGTGCTGTTTGAAGCATTGGGTCTGCCGAT
GAGCAGCGCAAACCAGATTTTGTTCTTGGACGACATTGGTCGTAACCTCA
AGGCAGCCCAGGCCCTGGGGATTCGGACGGTTCTTGTGACGGACGAGAAC
CGTGAGCAGGTGGTGGCGGCATTAAAGGGGCTTGCAAGATCAAGGTTGCA
AGCAAAAGCAGGAGGGGGGAGGTTGACGGAGCGGGGATCACGACTGTAGG
GGACGCCACATGCAAGGCAAAGGACGAAATGAAGATGACTAAAAACAAAA
ATAATAATACCAAAGTACATATTTGTCCAGGCG
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protein sequence of jgi.p|Nanoce1779_2|603624

>mRNA_8691-protein ID=mRNA_8691-protein|Name=jgi.p|Nanoce1779_2|603624|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MKAQDLPSSFFPRRLDTRSMFRHIIEASVTIDPSMLAAVRALRAAGFRTA
VLTNDFRVAPGVFSSAHEREAWLWARLDIMGRVLNDRSLFEVVVSSAATR
ARKPEQRVYEVLFEALGLPMSSANQILFLDDIGRNLKAAQALGIRTVLVT
DENREQVVAALKGLARSRLQAKAGGGRLTERGSRL*
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mRNA from alignment at scaffold_27:178866..179948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8691 ID=mRNA_8691|Name=jgi.p|Nanoce1779_2|603624|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp|location=Sequence derived from alignment at scaffold_27:178866..179948- (Nannochloropsis oceanica)
ATTGCGGCACAGCATTTGGAGGAGGCGCAAGAAGCTGGAGGAGGAGGAGG
AGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAATTAGAGTAAGCAACA
CAGCAGGAGTAGCAGAAGGAGCAAACTTTCCTTCTCCACACCTTCAAGAA
CTACCACAAGGACAAGTCGACGGTATCTCGACCGTAGTCTTTGACTGGGG
CGGGGTCCTGACCTCCCTCTCCCCCCTCTCCTCTATTCGCGACTTCGAAG
CCTCTCACAACCTCCCCAAGGGCTACATAAGTATCGCCATCCACGCAGCA
GGCGACGCCCACGGCCTGTTCCAACGGGTAGAGCGAGGCGAATTGCCTCT
AGATGACTCGTCGCTGCGAGCTTGGGAGGTTGAACTAACCTCTCTCAAGT
CCCATCAAGCTTATGCTGCAGTAGCCGAACGTTTCTCAGGAATGAAAGCG
CAAGATCTTCCCTCCTCTTTTTTCCCCCGTCGTCTCGATACCCGTTCCAT
GTTCCGGCATATTATCGAGGCTTCTGTCACAATAGACCCAAGCATGCTTG
CCGCTGTGCGGGCCCTGCGTGCCGCCGGTTTTCGAACAGCAGTACTGACA
AATGATTTTCGAGTCGCCCCTGGTGTTTTTTCTTCAGCTCACGAGAGGGA
AGCTTGGCTATGGGCACGGTTGGACATTATGGGGCGTGTGCTGAATGATC
GTAGCTTGTTTGAGGTCGTCGTGTCGTCGGCGGCGACCCGGGCCCGTAAG
CCGGAGCAGCGTGTGTATGAAGTGCTGTTTGAAGCATTGGGTCTGCCGAT
GAGCAGCGCAAACCAGATTTTGTTCTTGGACGACATTGGTCGTAACCTCA
AGGCAGCCCAGGCCCTGGGGATTCGGACGGTTCTTGTGACGGACGAGAAC
CGTGAGCAGGTGGTGGCGGCATTAAAGGGGCTTGCAAGATCAAGGTTGCA
AGCAAAAGCAGGAGGGGGGAGGTTGACGGAGCGGGGATCACGACTGTAGG
GGACGCCACATGCAAGGCAAAGGACGAAATGAAGATGACTAAAAACAAAA
ATAATAATACCAAAGTACATATTTGTCCAGGCG
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Coding sequence (CDS) from alignment at scaffold_27:178866..179948-

>mRNA_8691 ID=mRNA_8691|Name=jgi.p|Nanoce1779_2|603624|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_27:178866..179948- (Nannochloropsis oceanica)
ATGAAAGCGCAAGATCTTCCCTCCTCTTTTTTCCCCCGTCGTCTCGATAC
CCGTTCCATGTTCCGGCATATTATCGAGGCTTCTGTCACAATAGACCCAA
GCATGCTTGCCGCTGTGCGGGCCCTGCGTGCCGCCGGTTTTCGAACAGCA
GTACTGACAAATGATTTTCGAGTCGCCCCTGGTGTTTTTTCTTCAGCTCA
CGAGAGGGAAGCTTGGCTATGGGCACGGTTGGACATTATGGGGCGTGTGC
TGAATGATCGTAGCTTGTTTGAGGTCGTCGTGTCGTCGGCGGCGACCCGG
GCCCGTAAGCCGGAGCAGCGTGTGTATGAAGTGCTGTTTGAAGCATTGGG
TCTGCCGATGAGCAGCGCAAACCAGATTTTGTTCTTGGACGACATTGGTC
GTAACCTCAAGGCAGCCCAGGCCCTGGGGATTCGGACGGTTCTTGTGACG
GACGAGAACCGTGAGCAGGTGGTGGCGGCATTAAAGGGGCTTGCAAGATC
AAGGTTGCAAGCAAAAGCAGGAGGGGGGAGGTTGACGGAGCGGGGATCAC
GACTGTAG
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Synonyms
Publications