jgi.p|Nanoce1779_2|603623, mRNA_8690 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603623
Unique NamemRNA_8690
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length570
Alignment locationscaffold_27:178282..178851 -

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Properties
Property NameValue
TranscriptId603709
TrackFilteredModels2
ProteinId603623
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:178282..178851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603623gene_8690Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603623mRNA_8690-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8690CDS_8690Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8690 ID=mRNA_8690|Name=jgi.p|Nanoce1779_2|603623|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
GCGCGGGCGAGAAGCAAGTGGAAAATTTGAGGCGATTCTCCGAACCCATA
TGTTCTTTGCGGGTCTTCTTGCCTTTTTTGAATTTCTTGGCGTGCTTGCA
TGCTTGCTTGCTGGCTTGAACTGCTGCCTTACCTCTCCAGTGCACGACAC
GCAACTGCACACACAACACGCGCATGCAGGCCAGCCTTGCAGCCGTTGCA
ACACTTCTTCAGCGATCGTGGGCGTGTGGGCGAGCAGCAGCACACGAGGG
AGGCCCATCACCCCCTGCATGTGCATTCTTGCCTTCTTAGGATTATATCC
AGCCGGCCGCCGGCCAAAAACATCTGTTTTGGCCATATCTACACACACAG
CACATGACACCTTACATTCTTCTTCTCCCATGCTGGTCACAATAACCTGA
GACGCTTGGTGCCGCATTCAAATTTGCAATGGGCCTGCCTCATACCCACT
CACAGAAAACACATGGTCCCTTTCCTCACCCCACATTCCCCACAGCGACA
AAAAACCAACAAGAACCATGCGCTTCACCGCGACGGTGCTGCTGCTCCTA
CCTGCGGCCTCGCAAGCTGT
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protein sequence of jgi.p|Nanoce1779_2|603623

>mRNA_8690-protein ID=mRNA_8690-protein|Name=jgi.p|Nanoce1779_2|603623|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MFFAGLLAFFEFLGVLACLLAGLNCCLTSPVHDTQLHTQHAHAGQPCSRC
NTSSAIVGVWASSSTRGRPITPCMCILAFLGLYPAGRRPKTSVLAISTHT
AHDTLHSSSPMLVTI
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mRNA from alignment at scaffold_27:178282..178851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8690 ID=mRNA_8690|Name=jgi.p|Nanoce1779_2|603623|organism=Nannochloropsis oceanica|type=mRNA|length=570bp|location=Sequence derived from alignment at scaffold_27:178282..178851- (Nannochloropsis oceanica)
GCGCGGGCGAGAAGCAAGTGGAAAATTTGAGGCGATTCTCCGAACCCATA
TGTTCTTTGCGGGTCTTCTTGCCTTTTTTGAATTTCTTGGCGTGCTTGCA
TGCTTGCTTGCTGGCTTGAACTGCTGCCTTACCTCTCCAGTGCACGACAC
GCAACTGCACACACAACACGCGCATGCAGGCCAGCCTTGCAGCCGTTGCA
ACACTTCTTCAGCGATCGTGGGCGTGTGGGCGAGCAGCAGCACACGAGGG
AGGCCCATCACCCCCTGCATGTGCATTCTTGCCTTCTTAGGATTATATCC
AGCCGGCCGCCGGCCAAAAACATCTGTTTTGGCCATATCTACACACACAG
CACATGACACCTTACATTCTTCTTCTCCCATGCTGGTCACAATAACCTGA
GACGCTTGGTGCCGCATTCAAATTTGCAATGGGCCTGCCTCATACCCACT
CACAGAAAACACATGGTCCCTTTCCTCACCCCACATTCCCCACAGCGACA
AAAAACCAACAAGAACCATGCGCTTCACCGCGACGGTGCTGCTGCTCCTA
CCTGCGGCCTCGCAAGCTGT
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Coding sequence (CDS) from alignment at scaffold_27:178282..178851-

>mRNA_8690 ID=mRNA_8690|Name=jgi.p|Nanoce1779_2|603623|organism=Nannochloropsis oceanica|type=CDS|length=346bp|location=Sequence derived from alignment at scaffold_27:178282..178851- (Nannochloropsis oceanica)
ATGTTCTTTGCGGGTCTTCTTGCCTTTTTTGAATTTCTTGGCGTGCTTGC
ATGCTTGCTTGCTGGCTTGAACTGCTGCCTTACCTCTCCAGTGCACGACA
CGCAACTGCACACACAACACGCGCATGCAGGCCAGCCTTGCAGCCGTTGC
AACACTTCTTCAGCGATCGTGGGCGTGTGGGCGAGCAGCAGCACACGAGG
GAGGCCCATCACCCCCTGCATGTGCATTCTTGCCTTCTTAGGATTATATC
CAGCCGGCCGCCGGCCAAAAACATCTGTTTTGGCCATATCTACACACACA
GCACATGACACCTTACATTCTTCTTCTCCCATGCTGGTCACAATAA
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Synonyms
Publications