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Properties
| Property Name | Value |
|---|
| TranscriptId | 550201 |
| Track | FilteredModels2 |
| ProteinId | 550115 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:622973..625861 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_869 ID=mRNA_869|Name=jgi.p|Nanoce1779_2|550115|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp
ATATGATGGTCAGGGCTCCTAGAAGGAGGCCTGACAGGGGGGGAGGTAGC
GAAAGGCGAAGACGACTCGTCGGATGCGCGTGCGAATTATCAACCATGGT
GGTTCTTTCTCCGAAGCTCAAGCACCAGCTCATTTCTCACAACCCAAGAA
AGCGCGGCAACCCGTCACCCTCTCCCCCGTCCTTGACACCGACAGAGATG
GTGATGTTCTGGCCCTACAGCTGGATAAACCCAAAAACCCTCCTTATCCC
CACGACAGTGAGAACTTGCCCCCCACACACATCACGCTAAAAAAATAGCA
TGGCAACGTTTTGGAGCCGATTGTGGGACAAGACGAAGAAGGACCCCCTG
ATTCCCATTGGTTGCACCGCGACGCTGGGTTGCCTCAGTGCGGGTCTGTA
CGCCTTCAAGAGCGGAGAGAAACATTTATCACAAAAAATGATGCGGGCCC
GCGTGGTGGCACAAGGCTTCACAGTCGCGGTCCTCATGGCAGGCGCTTTC
TACAATTCGAATATAAAGGCAATCCAGGAGCCTGCTCGTGGCAGGAGTCC
ATCTTAAGCGCCTTCTTGAGGCGAAAGGCAGCAGCAATTAAGGAAGATAA
GTTTGAAAACGTAGTTTTTGTGCTATGTAAGGGAGAGAGCGCAATGGCTG
TACAGGTTGAAGAGAGGATGGACGGGGAGTTCGACGTGTCTGGCAAAGTG
CCTTGGGACATCAAATTTATGTGGAAATATTCGGGCACGTTTAAAGAAGC
AAGCAAACTAACATAAGAACGAGGCTCGTTATTTGTGAGCATCTCTCCAG
AGAAAAAGCACTCTCGGATCGGCCACGTTTTGAGGGTCGATGCGCAAGTG
GATTGACGATGATGCTGCTCCGTGCTCCCTCCGAAATGCCACCGGGCCTC
CGAAATGCCACCAGGCCTCTTTTGGAATCCTTGCTAACTGTCTTTTCTAC
AGTCCGGTACGTCTCCGGGCGTTTTAAAGGCGTGTCCTGAAATGTCACAA
TAAGTAAGGCCTTAGGCCCATCCTCTCGCCAAGGCCTCTCGACCACATTG
CTTCTTTCTTTCTCACGCCTCACATCTCCCCATGCATCCTACACAAACAC
CAACACACATGCGCCACCGTCACCACGATCACCACAGCTCTCACAAAGTA
GAGGATTATGAGCGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGAGCG
GAGCTGGCGGCGGTCCTGGAACTGTGACAGGTAGCAAGTCTACATCCCCG
TCCACTGTCCACGAGCCATCCTGGCTCAAGGGTGCGTCAATCTCATCGAA
CCCGGTCGCGACTGCGCAATCCGCATCGCATGTGCCGATTCAACCAGCCA
CGCTTCAGCCTCAAGCCGCCGCTGCCGCTCCCGCTCAACAACAGCCGAGC
GGCCAGACACCACAGCTTGTTGTGTATATGCGGGTAGCGAATTTCGGGCT
TTGCATTCTGATGTCGGCAGCTGCTATTCTGACTGTGATTGTACCTGCCG
GTGCCACGCCTGCCTCGTGGGTGTTGGCGTTCTATGTGCTCGCCTTCTCC
TGCCTCCTCTGCTGCTTTGAATTCAACATCCGGCAAGTCGCTAAGCACAT
CGCCAACAATTTCGGCTTTCTCTACGACGCTAAATCCCGCGCGACCTTCC
TAGTCTTCGTGGGTGTCCTCTGCTTCTCCCTGGGAGTTACCGGCAAAATA
GCTGGGGCAGCCATGATTGCCAATGCCTTGTTCAACACCTTTGTCTTATG
TAAATATCCTCAATATGCAACCAATGCGCCCGCCACCACCGCGAACCAAG
AAGCCGCCGGGTGGTTGCGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGG
GGGGCCGTGATTGGTGCCGCCGTAAGCAGTCAATCAATAGGAACAGGAGC
AGGGGGAGGAGTGGCGGCGGGAGGGAACGCGGCTAGGAGTTCATGGATTT
AG back to topprotein sequence of jgi.p|Nanoce1779_2|550115 >mRNA_869-protein ID=mRNA_869-protein|Name=jgi.p|Nanoce1779_2|550115|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MSDNGGFNPFAPRSGAGGGPGTVTGSKSTSPSTVHEPSWLKGASISSNPV
ATAQSASHVPIQPATLQPQAAAAAPAQQQPSGQTPQLVVYMRVANFGLCI
LMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIAN
NFGFLYDAKSRATFLVFVGVLCFSLGVTGKIAGAAMIANALFNTFVLCKY
PQYATNAPATTANQEAAGWLRRNPAVAQKVGGAVIGAAVSSQSIGTGAGG
GVAAGGNAARSSWI* back to topmRNA from alignment at scaffold_2:622973..625861+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_869 ID=mRNA_869|Name=jgi.p|Nanoce1779_2|550115|organism=Nannochloropsis oceanica|type=mRNA|length=2889bp|location=Sequence derived from alignment at scaffold_2:622973..625861+ (Nannochloropsis oceanica)
ATATGATGGTCAGGGCTCCTAGAAGGAGGCCTGACAGGGGGGGAGGTAGC
GAAAGGCGAAGACGACTCGTCGGATGCGCGTGCGAATTATCAACCATGGT
GGTTCTTTCTCCGAAGCTCAAGCACCAGCTCATTTCTCACAACCCAAGAA
AGCGCGGCAACCCGTCACCCTCTCCCCCGTCCTTGACACCGACAGAGATG
GTGATGTTCTGGCCCTACAGCTGGATAAACCCAAAAACCCTCCTTATCCC
CACGACAGTGAGAACTTGCCCCCCACACACATCACGCTAAAAAAATAGCA
TGGCAACGTTTTGGAGCCGATTGTGGGACAAGACGAAGAAGGACCCCCTG
ATTCCCATTGGTTGCACCGCGACGCTGGGTTGCCTCAGTGCGGGTCTGTA
CGCCTTCAAGAGCGGAGAGGTACGTGGGCGTCTGTGGACTGCGAAAGGGG
ACGGCGGGCCACACAAGTCAACCCTTCCCCCCCCCCCCCCTCCCGCTCCC
CCCAATCCGTGAATTCTGTTTACAATACTTTCTGATCAACCGGCATTCAT
GCGTAAACACAGAAACATTTATCACAAAAAATGATGCGGGCCCGCGTGGT
GGCACAAGGCTTCACAGTCGCGGTCCTCATGGCAGGTAAGGAGACGCAGA
AAGACGGTAGATAGGGACGGAAGTTAATAATGCCCGCTTCCCGCGTGATG
ACTGGTGCTTTCCAATTCTAGGGTCGTCGAGGCCATTTCTTCGTAGTTCC
TCCCGTGGCTTATTTCCTCCACGCTATGCTGTACAGGCGCTTTCTACAAT
TCGAATATAAAGGCAATCCAGGAGCCTGCTCGTGGCAGGTAGGGCTGTTT
TCATTCAAAAGAGGAAGACAGGGAGGTCAGATGGAGGGATGCCGGCTGCC
AGGATGCAGTTAGAGGGTTCCTTTATTTGTGTGTAATAATGTGAAAAAAT
CCCCCTCTTCTAAACTGACGTTTCCGCTCCTTACCCTGGTAATCAATTCA
CATGAACTCTCCGCTCTTCCCTCTTTTACACAGGAGTCCATCTTAAGCGC
CTTCTTGAGGCGAAAGGCAGCAGCAATTAAGGAAGATAAGTTTGAAAACG
TAGTTTTTGTGCTATGTAAGGGAGAGAGCGCAATGGCTGTACAGGTTGAA
GAGAGGATGGACGGGGAGTTCGACGTGTCTGGCAAAGTGCCTTGGGACAT
CAAATTTATGTGGAAATATTCGGGCACGTTTAAAGAAGCAAGCAAACTAA
CATAAGAACGAGGCTCGTTATTTGTGAGCATCTCTCCAGAGAAAAAGCAC
TCTCGGATCGGCCACGTTTTGAGGGTCGATGCGCAAGTGGATTGACGATG
ATGCTGCTCCGTGCTCCCTCCGAAATGCCACCGGGCCTCCGAAATGCCAC
CAGGCCTCTTTTGGAATCCTTGCTAACTGTCTTTTCTACAGTCCGGTACG
TCTCCGGGCGTTTTAAAGGCGTGTCCTGAAATGTCACAATAAGTAAGGCC
TTAGGCCCATCCTCTCGCCAAGGCCTCTCGACCACATTGCTTCTTTCTTT
CTCACGCCTCACATCTCCCCATGCATCCTACACAAACACCAACACACATG
CGCCACCGTCACCACGATCACCACAGCTCTCACAAAGTAGAGGATTATGA
GCGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGGTAAGGACATTAGCT
TTTCCCTCTTCTCTCTTCCTGTGAGGCCCCATTTCCAAAGCCCAGTCAAA
ATATGCTTCCTTCATTCCTACATCCATGCTGAATCACCACAACCAAATCA
CAAGATAGTAGAGCTGATGATGGGACTCGTGCCAGCAGCGGCAAGTTCCC
ATCCCCGTGCCTCTTACCCGTTTCCCCATTCTTACACAATTACTCTTTTC
CCATTTTCTGTCAGAGCGGAGCTGGCGGCGGTCCTGGAACTGTGACAGGT
AGCAAGTCTACATCCCCGTCCACTGTCCACGAGCCATCCTGGCTCAAGGG
TGCGTCAATCTCATCGAACCCGGTCGCGACTGCGCAATCCGCATCGCATG
TGCCGATTCAACCAGCCACGCTTCAGCCTCAAGCCGCCGCTGCCGCTCCC
GCTCAACAACAGCCGAGCGGCCAGACACCACAGCTTGTTGTGTATATGCG
GGTAGCGAATTTCGGGCTTTGCATTCTGATGTCGGCAGCTGCTATTCTGA
CTGTGATTGTACCTGCCGGTGCCACGCCTGCCTCGTGGGTGTTGGCGTTC
TATGTGCTGTGAGTAGACGGAGAGTGCGGGCCGCGCTGTCTGATATTTTG
CTCCTTTTGTTTCCATCGGGTTTATGTAGCGTCTCTGATGGCTTGTCTCA
CATAGATATTGTCCATTTCTTGTAGTCCATCATTTATCATTTCCCCACGA
CACTGCTGCTTCTATGAGCGCTCTCCTTAATCTTTCCTCTGCCCTTCCTT
CCCTCCCTCCCTCCCTCCCTTCTACAGCGCCTTCTCCTGCCTCCTCTGCT
GCTTTGAATTCAACATCCGGCAAGTCGCTAAGCACATCGCCAACAATTTC
GGCTTTCTCTACGACGCTAAATCCCGCGCGACCTTCCTAGTCTTCGTGGG
TGTCCTCTGCTTCTCCCTGGGAGTTACCGGCAAAATAGCTGGGGCAGCCA
TGATTGCCAATGCCTTGTTCAACACCTTTGTCTTATGTAAATATCCTCAA
TATGCAACCAATGCGCCCGCCACCACCGCGAACCAAGAAGCCGCCGGGTG
GTTGCGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGGGGGGCCGTGATTG
GTGCCGCCGTAAGCAGTCAATCAATAGGAACAGGAGCAGGGGGAGGAGTG
GCGGCGGGAGGGAACGCGGCTAGGAGTTCATGGATTTAG back to topCoding sequence (CDS) from alignment at scaffold_2:622973..625861+ >mRNA_869 ID=mRNA_869|Name=jgi.p|Nanoce1779_2|550115|organism=Nannochloropsis oceanica|type=CDS|length=2385bp|location=Sequence derived from alignment at scaffold_2:622973..625861+ (Nannochloropsis oceanica)
ATGAGCGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGAGCGGAGCTGG
CGGCGGTCCTGGAACTGTGACAGGTAGCAAGTCTACATCCCCGTCCACTG
TCCACGAGCCATCCTGGCTCAAGGGTGCGTCAATCTCATCGAACCCGGTC
GCGACTGCGCAATCCGCATCGCATGTGCCGATTCAACCAGCCACGCTTCA
GCCTCAAGCCGCCGCTGCCGCTCCCGCTCAACAACAGCCGAGCGGCCAGA
CACCACAGCTTGTTGTGTATATGCGGGTAGCGAATTTCGGGCTTTGCATT
CTGATGTCGGCAGCTGCTATTCTGACTGTGATTGTACCTGCCGGTGCCAC
GCCTGCCTCGTGGGTGTTGGCGTTCTATGTGCTCGCCTTCTCCTGCCTCC
TCTGCTGCTTTGAATTCAACATCCGGCAAGTCGCTAAGCACATCGCCAAC
AATTTCGGCTTTCTCTACGACGCTAAATCCCGCGCGACCTTCCTAGTCTT
CGTGGGTGTCCTCTGCTTCTCCCTGGGAGTTACCGGCAAAATAGCTGGGG
CAGCCATGATTGCCAATGCCTTGTTCAACACCTTTGTCTTATGTAAATAT
CCTCAATATGCAACCAATGCGCCCGCCACCACCGCGAACCAAGAAGCCGC
CGGGTGGTTGCGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGGGGGGCCG
TGATTGGTGCCGCCGTAAGCAGTCAATCAATAGGAACAGGAGCAGGGGGA
GGAGTGGCGGCGGGAGGGAACGCGGCTAGGAGTTCATGGATTTAGATGAG
CGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGAGCGGAGCTGGCGGCG
GTCCTGGAACTGTGACAGGTAGCAAGTCTACATCCCCGTCCACTGTCCAC
GAGCCATCCTGGCTCAAGGGTGCGTCAATCTCATCGAACCCGGTCGCGAC
TGCGCAATCCGCATCGCATGTGCCGATTCAACCAGCCACGCTTCAGCCTC
AAGCCGCCGCTGCCGCTCCCGCTCAACAACAGCCGAGCGGCCAGACACCA
CAGCTTGTTGTGTATATGCGGGTAGCGAATTTCGGGCTTTGCATTCTGAT
GTCGGCAGCTGCTATTCTGACTGTGATTGTACCTGCCGGTGCCACGCCTG
CCTCGTGGGTGTTGGCGTTCTATGTGCTCGCCTTCTCCTGCCTCCTCTGC
TGCTTTGAATTCAACATCCGGCAAGTCGCTAAGCACATCGCCAACAATTT
CGGCTTTCTCTACGACGCTAAATCCCGCGCGACCTTCCTAGTCTTCGTGG
GTGTCCTCTGCTTCTCCCTGGGAGTTACCGGCAAAATAGCTGGGGCAGCC
ATGATTGCCAATGCCTTGTTCAACACCTTTGTCTTATGTAAATATCCTCA
ATATGCAACCAATGCGCCCGCCACCACCGCGAACCAAGAAGCCGCCGGGT
GGTTGCGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGGGGGGCCGTGATT
GGTGCCGCCGTAAGCAGTCAATCAATAGGAACAGGAGCAGGGGGAGGAGT
GGCGGCGGGAGGGAACGCGGCTAGGAGTTCATGGATTTAGATGAGCGACA
ATGGAGGGTTCAACCCCTTCGCTCCAAGGAGCGGAGCTGGCGGCGGTCCT
GGAACTGTGACAGGTAGCAAGTCTACATCCCCGTCCACTGTCCACGAGCC
ATCCTGGCTCAAGGGTGCGTCAATCTCATCGAACCCGGTCGCGACTGCGC
AATCCGCATCGCATGTGCCGATTCAACCAGCCACGCTTCAGCCTCAAGCC
GCCGCTGCCGCTCCCGCTCAACAACAGCCGAGCGGCCAGACACCACAGCT
TGTTGTGTATATGCGGGTAGCGAATTTCGGGCTTTGCATTCTGATGTCGG
CAGCTGCTATTCTGACTGTGATTGTACCTGCCGGTGCCACGCCTGCCTCG
TGGGTGTTGGCGTTCTATGTGCTCGCCTTCTCCTGCCTCCTCTGCTGCTT
TGAATTCAACATCCGGCAAGTCGCTAAGCACATCGCCAACAATTTCGGCT
TTCTCTACGACGCTAAATCCCGCGCGACCTTCCTAGTCTTCGTGGGTGTC
CTCTGCTTCTCCCTGGGAGTTACCGGCAAAATAGCTGGGGCAGCCATGAT
TGCCAATGCCTTGTTCAACACCTTTGTCTTATGTAAATATCCTCAATATG
CAACCAATGCGCCCGCCACCACCGCGAACCAAGAAGCCGCCGGGTGGTTG
CGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGGGGGGCCGTGATTGGTGC
CGCCGTAAGCAGTCAATCAATAGGAACAGGAGCAGGGGGAGGAGTGGCGG
CGGGAGGGAACGCGGCTAGGAGTTCATGGATTTAG back to top
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