jgi.p|Nanoce1779_2|603622, mRNA_8689 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603622
Unique NamemRNA_8689
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1728
Alignment locationscaffold_27:176633..178360 -

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Properties
Property NameValue
TranscriptId603708
TrackFilteredModels2
ProteinId603622
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:176633..178360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603622gene_8689Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603622mRNA_8689-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8689CDS_8689Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8689 ID=mRNA_8689|Name=jgi.p|Nanoce1779_2|603622|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
ACAGCGACAAAAAACCAACAAGAACCATGCGCTTCACCGCGACGGTGCTG
CTGCTCCTACCTGCGGCCTCGCAAGCTGTGCATCATTTTAAGGAGCTCAA
CAGCATTCAAGACTTGGAGTTGCTGGGCCTGATCAACAAGGATAGAGGCA
TGGCCCAGAAGCACCTCCTCCTCGGCTTCAGCAACGCGGAATGCGTCGAC
AAAGTGCGCAACGTCGGCTTTCCTTACGATTACGCCGCGTTGGGGGAGCA
CGTGGAGACGGGGGAAGTCATGCTGGAACGGGACGATGAGCTCGCCCGAG
CGTATAACATCACGGAGTGCAACCAATACGTTTATGTCCCCCGTGGCGGC
GACGTCCGCACCGACTTTGACGTGCTTAGCGCCCATGACAAGCTGCAATT
GCATAATTGGCTTTTTACGCACCTGGCTATCGAGATTGAGATTGTAAATG
ACTTGCCTTTTGACGTCTCGATTAAGTGGGAGGACACCGGCCGCCGTGAA
GGCCCACACGATCTTATCGCCATCCCTCGGGGGAAGTCAGCCTCGGTCCA
CACCTTTGAATCGCACCACCTTCGCTTCGTTAGCCACCAGCCTGGGGCGG
GGTCGGAGACTTTCTTGCGTGTGCGTGTTGATGGGTCAGAGACGACGTTG
CGGCTTTCGGATTACCTTTCTAATGACGCTTCTAGGCAATGTGCCAATCC
CCTCGACTGCTCTGCAGGTGCAACGGGCGCACTGCCCAAGAACGTGAATA
ACGAACATGGGTCCTCGGATGACATCCAAACAGCAGTGGAAGATATGGAA
ATCTGGCGAAATCGAGACAGCGAAAACCGAGCCCGAGTCATCCGCAATGA
AAACCAACCACAAACCAAACCCCGGTACACGCCATTGGGCTTCAAAAGAG
CGCGTATTCCCGACGATATCTACAAAATGATGCTCCATAGGTACAATACC
GGCGAGCGTATCTCGGAGCCATGGCCTAAATCAGATTGTCACACCAATTT
TTTCGAGGCCCCCTCCACGATGGTCTACCTGACCGACGCGGAAAAAAACC
AAATTTTCGCGGCAATGAAGCCGGTTCTGAGTGAGTGGGCGGGGGGGGTG
AACTTATTTCCGACTTCTGTGTATGGTGTGAGGATCTACCACAACGGTTC
GTGGTTGAGGGAGCATGTGGACACGGGGGACACGCACATTATTAGTGCCA
TTATGAACATCGCTCAGGACGTAGAGGAGGATTGGCTGTTGACCTTTATC
GACCACAATGGGGACAGGCATTTCATTACCTTGGAACCAGGGGATGCGTT
GTACTATGAATCGGCCTCGTGCTTGCATGGGAGGCCTGTAGCCTTCAAGG
GCTCTTTCTTTGCGAATGCCTTTGTGCATTTCAAGGTGGTTTAGAAGGAG
GAGAGAGGAGGAGTGGTGGGGTGAACCAAAGGAAGGATGAACAGAGCGGA
TAGGCCGCTCCCCCCCCTAGCTCTCTGTATTTCTTCTTCCATTGGCAAAG
CGGTAGCATACATACATGCATGTAAAGAAAAGAACTCAAAAAGAAGGGAA
GAGAGGGAAGGAGAGAGAAAGAGAGCGTCCTACTTCGCGCACGGAAAGAT
AACATAAGGGTCGCAGCAGCCCAAGGACAGAAAGAGACGAGGAAACACGC
CTCGGCACCAAAGCCAAAACAATGGATAGGCAATAGACATGAGGAGGACG
AAAAGTAAACAGAACAAAACGTGCAACA
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protein sequence of jgi.p|Nanoce1779_2|603622

>mRNA_8689-protein ID=mRNA_8689-protein|Name=jgi.p|Nanoce1779_2|603622|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MRFTATVLLLLPAASQAVHHFKELNSIQDLELLGLINKDRGMAQKHLLLG
FSNAECVDKVRNVGFPYDYAALGEHVETGEVMLERDDELARAYNITECNQ
YVYVPRGGDVRTDFDVLSAHDKLQLHNWLFTHLAIEIEIVNDLPFDVSIK
WEDTGRREGPHDLIAIPRGKSASVHTFESHHLRFVSHQPGAGSETFLRVR
VDGSETTLRLSDYLSNDASRQCANPLDCSAGATGALPKNVNNEHGSSDDI
QTAVEDMEIWRNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYK
MMLHRYNTGERISEPWPKSDCHTNFFEAPSTMVYLTDAEKNQIFAAMKPV
LSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVE
EDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFV
HFKVV*
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mRNA from alignment at scaffold_27:176633..178360-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8689 ID=mRNA_8689|Name=jgi.p|Nanoce1779_2|603622|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp|location=Sequence derived from alignment at scaffold_27:176633..178360- (Nannochloropsis oceanica)
ACAGCGACAAAAAACCAACAAGAACCATGCGCTTCACCGCGACGGTGCTG
CTGCTCCTACCTGCGGCCTCGCAAGCTGTGCATCATTTTAAGGAGCTCAA
CAGCATTCAAGACTTGGAGTTGCTGGGCCTGATCAACAAGGATAGAGGCA
TGGCCCAGAAGCACCTCCTCCTCGGCTTCAGCAACGCGGAATGCGTCGAC
AAAGTGCGCAACGTCGGCTTTCCTTACGATTACGCCGCGTTGGGGGAGCA
CGTGGAGACGGGGGAAGTCATGCTGGAACGGGACGATGAGCTCGCCCGAG
CGTATAACATCACGGAGTGCAACCAATACGTTTATGTCCCCCGTGGCGGC
GACGTCCGCACCGACTTTGACGTGCTTAGCGCCCATGACAAGCTGCAATT
GCATAATTGGCTTTTTACGCACCTGGCTATCGAGATTGAGATTGTAAATG
ACTTGCCTTTTGACGTCTCGATTAAGTGGGAGGACACCGGCCGCCGTGAA
GGCCCACACGATCTTATCGCCATCCCTCGGGGGAAGTCAGCCTCGGTCCA
CACCTTTGAATCGCACCACCTTCGCTTCGTTAGCCACCAGCCTGGGGCGG
GGTCGGAGACTTTCTTGCGTGTGCGTGTTGATGGGTCAGAGACGACGTTG
CGGCTTTCGGATTACCTTTCTAATGACGCTTCTAGGCAATGTGCCAATCC
CCTCGACTGCTCTGCAGGTGCAACGGGCGCACTGCCCAAGAACGTGAATA
ACGAACATGGGTCCTCGGATGACATCCAAACAGCAGTGGAAGATATGGAA
ATCTGGCGAAATCGAGACAGCGAAAACCGAGCCCGAGTCATCCGCAATGA
AAACCAACCACAAACCAAACCCCGGTACACGCCATTGGGCTTCAAAAGAG
CGCGTATTCCCGACGATATCTACAAAATGATGCTCCATAGGTACAATACC
GGCGAGCGTATCTCGGAGCCATGGCCTAAATCAGATTGTCACACCAATTT
TTTCGAGGCCCCCTCCACGATGGTCTACCTGACCGACGCGGAAAAAAACC
AAATTTTCGCGGCAATGAAGCCGGTTCTGAGTGAGTGGGCGGGGGGGGTG
AACTTATTTCCGACTTCTGTGTATGGTGTGAGGATCTACCACAACGGTTC
GTGGTTGAGGGAGCATGTGGACACGGGGGACACGCACATTATTAGTGCCA
TTATGAACATCGCTCAGGACGTAGAGGAGGATTGGCTGTTGACCTTTATC
GACCACAATGGGGACAGGCATTTCATTACCTTGGAACCAGGGGATGCGTT
GTACTATGAATCGGCCTCGTGCTTGCATGGGAGGCCTGTAGCCTTCAAGG
GCTCTTTCTTTGCGAATGCCTTTGTGCATTTCAAGGTGGTTTAGAAGGAG
GAGAGAGGAGGAGTGGTGGGGTGAACCAAAGGAAGGATGAACAGAGCGGA
TAGGCCGCTCCCCCCCCTAGCTCTCTGTATTTCTTCTTCCATTGGCAAAG
CGGTAGCATACATACATGCATGTAAAGAAAAGAACTCAAAAAGAAGGGAA
GAGAGGGAAGGAGAGAGAAAGAGAGCGTCCTACTTCGCGCACGGAAAGAT
AACATAAGGGTCGCAGCAGCCCAAGGACAGAAAGAGACGAGGAAACACGC
CTCGGCACCAAAGCCAAAACAATGGATAGGCAATAGACATGAGGAGGACG
AAAAGTAAACAGAACAAAACGTGCAACA
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Coding sequence (CDS) from alignment at scaffold_27:176633..178360-

>mRNA_8689 ID=mRNA_8689|Name=jgi.p|Nanoce1779_2|603622|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_27:176633..178360- (Nannochloropsis oceanica)
ATGCGCTTCACCGCGACGGTGCTGCTGCTCCTACCTGCGGCCTCGCAAGC
TGTGCATCATTTTAAGGAGCTCAACAGCATTCAAGACTTGGAGTTGCTGG
GCCTGATCAACAAGGATAGAGGCATGGCCCAGAAGCACCTCCTCCTCGGC
TTCAGCAACGCGGAATGCGTCGACAAAGTGCGCAACGTCGGCTTTCCTTA
CGATTACGCCGCGTTGGGGGAGCACGTGGAGACGGGGGAAGTCATGCTGG
AACGGGACGATGAGCTCGCCCGAGCGTATAACATCACGGAGTGCAACCAA
TACGTTTATGTCCCCCGTGGCGGCGACGTCCGCACCGACTTTGACGTGCT
TAGCGCCCATGACAAGCTGCAATTGCATAATTGGCTTTTTACGCACCTGG
CTATCGAGATTGAGATTGTAAATGACTTGCCTTTTGACGTCTCGATTAAG
TGGGAGGACACCGGCCGCCGTGAAGGCCCACACGATCTTATCGCCATCCC
TCGGGGGAAGTCAGCCTCGGTCCACACCTTTGAATCGCACCACCTTCGCT
TCGTTAGCCACCAGCCTGGGGCGGGGTCGGAGACTTTCTTGCGTGTGCGT
GTTGATGGGTCAGAGACGACGTTGCGGCTTTCGGATTACCTTTCTAATGA
CGCTTCTAGGCAATGTGCCAATCCCCTCGACTGCTCTGCAGGTGCAACGG
GCGCACTGCCCAAGAACGTGAATAACGAACATGGGTCCTCGGATGACATC
CAAACAGCAGTGGAAGATATGGAAATCTGGCGAAATCGAGACAGCGAAAA
CCGAGCCCGAGTCATCCGCAATGAAAACCAACCACAAACCAAACCCCGGT
ACACGCCATTGGGCTTCAAAAGAGCGCGTATTCCCGACGATATCTACAAA
ATGATGCTCCATAGGTACAATACCGGCGAGCGTATCTCGGAGCCATGGCC
TAAATCAGATTGTCACACCAATTTTTTCGAGGCCCCCTCCACGATGGTCT
ACCTGACCGACGCGGAAAAAAACCAAATTTTCGCGGCAATGAAGCCGGTT
CTGAGTGAGTGGGCGGGGGGGGTGAACTTATTTCCGACTTCTGTGTATGG
TGTGAGGATCTACCACAACGGTTCGTGGTTGAGGGAGCATGTGGACACGG
GGGACACGCACATTATTAGTGCCATTATGAACATCGCTCAGGACGTAGAG
GAGGATTGGCTGTTGACCTTTATCGACCACAATGGGGACAGGCATTTCAT
TACCTTGGAACCAGGGGATGCGTTGTACTATGAATCGGCCTCGTGCTTGC
ATGGGAGGCCTGTAGCCTTCAAGGGCTCTTTCTTTGCGAATGCCTTTGTG
CATTTCAAGGTGGTTTAG
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Synonyms
Publications