jgi.p|Nanoce1779_2|546586, mRNA_8687 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546586
Unique Name	mRNA_8687
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2153
Alignment location	scaffold_27:171025..173177 -

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Properties


Property Name	Value
TranscriptId	546672
Track	FilteredModels2
ProteinId	546586

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:171025..173177 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546586	gene_8687	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546586	mRNA_8687-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8687	CDS_8687	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:171025..173177-
coding sequence from alignment at scaffold_27:171025..173177-

mRNA sequence

>mRNA_8687 ID=mRNA_8687|Name=jgi.p|Nanoce1779_2|546586|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp
GGGGTAGTTGATGTTGTCCGAACAGCAGCAGCAGTAACGGCATGATTGTG
CGTTGTGGTGGACTGGCAAGTGCGTGCTGTGGAGAGCATCGGGATTTGGG
AAGGGGTGAGGAGGGATGACGATCAGGGTAGACTGACAGGGACACTGTGG
ACCAAAAACGCAGCGCAGTGCTGCATCTACTCCACAACTGCGATGCTACA
AGTCCCCAGTCTATGCATTGAGTGTGGTGCAAGTGAAATGTGGGGTTTGT
GACCTGGTGGTCTCTCTACAAAGCGGGTCTCCTTCGCATCACGTCATCCA
AGTCGATCGCAAAAGCCCACGTCGTTTACGTCACTTGAATTTTCACGCCT
TTTTTGCTCCAGTACCACAGGCTTAGCCAGCTCCAGTCATGGACGATGAC
GAAGGAAGAGGAGAGCGGTATGCACCGCATGCCCTGTCGTTTTCCATAGA
CCTGGACAGCGCTTCATGGTCGATGCTGAAAGGCCACCGTGGGGAGGTTC
TATCTCTCGACATTTTAGGGCTCGAGCGGGCAGGAACAGGGCGTGACGCT
TCCGGCATGGTTTTACTGGCATCGGGAGGGGAGGATTCAACATGCCGGGT
GTGGGATGTGGCGGCCGGCCGGGCCATTAAGTGCTACACGGGCATGTTCG
AGGATAACGAGGGAGTCGGGGCAGTGGCATTCGTCGATGCCTCCCGCCTC
CTTGCTGCCACCAGCACCTCAATTTACGAACTGGACTTAAACTTCCCAGG
TGTAGTTGTCAGAGAAGCATTGGGTACACTCCCATCAGTGACCAACGATG
AGATCAACCAAGTAGCCGTTCATCCTAGGAAGGGCAACAACCATGTGGCC
GTTGCGGATGACAGTGGTACTGTTACTCTCCTTGACTCTTCTGTCCGTCC
ACCCAAGCCCATTCGAACCCTTCGAAGATCCAGCGACAATTATGACTTGT
GTACCTGTGTCGCATTCCGACCACGGGTGCCATATGACTTGGCGTGTGGG
TTTCATAGTACGTGCACAGTGGGCCTATGGGACTTTTCGAAGGGCCAGAA
AGGCTGTCGTGCTGTCGATGTATCGGCAGCAGCAGTAGGAGAAGGGGAAT
GTGAAGATGACGATCCCACTATAGCACCGTCAGCGGCGTCTTCATGCCAG
TTGTTCAATCCCCCGTATGTTAATTCTCTGGCTTTTTCGGCTTGTGGAAG
GTGGGTGGCGGTGGGGAAGGGGAATGGGGAGGTTGGGATTTATGACTACG
TAAAGGGGGGAGGAGAAGGAGGGGGAGGAGGCAGCGGAGAGGCTATAGCG
GTGTTACAGGGCGGGCACACCACTAGTGTTGCGGGCGTAGTATTCCTGGA
TATGGGTGTCGGAGAGGAAAGGGGAGAGGGAAAAGGAAAGAGTAGGAGGA
AGAAGGGAAGAGGAGGGGGTGGTGGAAGGGAAGAGGTAGCATTCTTGGCA
TCAGTTGGCAATGATCGCATGCTCAATTTCTGGGAATGTTCGCTTCCTAG
ACTTGCCGGTAACTGCAGCAGCAACAGCATCAAAAGCAACACCAACTTCA
ACAGCAACAGCAGCAAGTTAAGACGGCCGCGGATTTTGAAGCAATTTACT
GATTTGCCGGGGAAGCCAAATTGGATGGTCAGCACCGTTCTGATGTCTGA
TTCTGCTGCTACTGTCGCTCCTGCTGCAGCTACTTCTCAGCTGGAGGTTC
GCGGTGAAGAAAATGAAGAAGGAGGGAAAGAGGCAGGCAGGGGAAAGGGG
GAGGACGGTGTGACACAACGGTCTTTGCGAGTGTTTGTTGCGATGACCAC
CTCGGAGATCGCGGTGTTGAATGTAGATATCAGTGTACAGCGGGAGACGC
ATCAGCAGTCGTAGGAATAGCAGCAGTATCATTTGCAGCGGCAGCAACAG
CAGCAGCAGCAGCATGAGGAGGCTGGGAAGCAGCGTGATCATCAGTGTAC
AGCGGGAGACGCACAGCAGCAGCAGTCGGAGGAATAGCAGCAGTATCATT
TGCAGCGGCAGCAACAGCAGCAGCAGCAGCAGCATGAGGAGGCTGGGAAG
CAGCGTGATGAAGAAGGCATCGTTATGTACATATAGAACACAATTTTGAT
TGGGGGGATGGGGCGTTGGAGTGAAAATCAGAAAATGTCAGGAAGGTGGC
AGG

protein sequence of jgi.p|Nanoce1779_2|546586

>mRNA_8687-protein ID=mRNA_8687-protein|Name=jgi.p|Nanoce1779_2|546586|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MDDDEGRGERYAPHALSFSIDLDSASWSMLKGHRGEVLSLDILGLERAGT
GRDASGMVLLASGGEDSTCRVWDVAAGRAIKCYTGMFEDNEGVGAVAFVD
ASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGN
NHVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPRVPYD
LACGFHSTCTVGLWDFSKGQKGCRAVDVSAAAVGEGECEDDDPTIAPSAA
SSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDYVKGGGEGGGGGSG
EAIAVLQGGHTTSVAGVVFLDMGVGEERGEGKGKSRRKKGRGGGGGREEV
AFLASVGNDRMLNFWECSLPRLAGNCSSNSIKSNTNFNSNSSKLRRPRIL
KQFTDLPGKPNWMVSTVLMSDSAATVAPAAATSQLEVRGEENEEGGKEAG
RGKGEDGVTQRSLRVFVAMTTSEIAVLNVDISVQRETHQQS*

mRNA from alignment at scaffold_27:171025..173177-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8687 ID=mRNA_8687|Name=jgi.p|Nanoce1779_2|546586|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp|location=Sequence derived from alignment at scaffold_27:171025..173177- (Nannochloropsis oceanica)
GGGGTAGTTGATGTTGTCCGAACAGCAGCAGCAGTAACGGCATGATTGTG
CGTTGTGGTGGACTGGCAAGTGCGTGCTGTGGAGAGCATCGGGATTTGGG
AAGGGGTGAGGAGGGATGACGATCAGGGTAGACTGACAGGGACACTGTGG
ACCAAAAACGCAGCGCAGTGCTGCATCTACTCCACAACTGCGATGCTACA
AGTCCCCAGTCTATGCATTGAGTGTGGTGCAAGTGAAATGTGGGGTTTGT
GACCTGGTGGTCTCTCTACAAAGCGGGTCTCCTTCGCATCACGTCATCCA
AGTCGATCGCAAAAGCCCACGTCGTTTACGTCACTTGAATTTTCACGCCT
TTTTTGCTCCAGTACCACAGGCTTAGCCAGCTCCAGTCATGGACGATGAC
GAAGGAAGAGGAGAGCGGTATGCACCGCATGCCCTGTCGTTTTCCATAGA
CCTGGACAGCGCTTCATGGTCGATGCTGAAAGGCCACCGTGGGGAGGTTC
TATCTCTCGACATTTTAGGGCTCGAGCGGGCAGGAACAGGGCGTGACGCT
TCCGGCATGGTTTTACTGGCATCGGGAGGGGAGGATTCAACATGCCGGGT
GTGGGATGTGGCGGCCGGCCGGGCCATTAAGTGCTACACGGGCATGTTCG
AGGATAACGAGGGAGTCGGGGCAGTGGCATTCGTCGATGCCTCCCGCCTC
CTTGCTGCCACCAGCACCTCAATTTACGAACTGGACTTAAACTTCCCAGG
TGTAGTTGTCAGAGAAGCATTGGGTACACTCCCATCAGTGACCAACGATG
AGATCAACCAAGTAGCCGTTCATCCTAGGAAGGGCAACAACCATGTGGCC
GTTGCGGATGACAGTGGTACTGTTACTCTCCTTGACTCTTCTGTCCGTCC
ACCCAAGCCCATTCGAACCCTTCGAAGATCCAGCGACAATTATGACTTGT
GTACCTGTGTCGCATTCCGACCACGGGTGCCATATGACTTGGCGTGTGGG
TTTCATAGTACGTGCACAGTGGGCCTATGGGACTTTTCGAAGGGCCAGAA
AGGCTGTCGTGCTGTCGATGTATCGGCAGCAGCAGTAGGAGAAGGGGAAT
GTGAAGATGACGATCCCACTATAGCACCGTCAGCGGCGTCTTCATGCCAG
TTGTTCAATCCCCCGTATGTTAATTCTCTGGCTTTTTCGGCTTGTGGAAG
GTGGGTGGCGGTGGGGAAGGGGAATGGGGAGGTTGGGATTTATGACTACG
TAAAGGGGGGAGGAGAAGGAGGGGGAGGAGGCAGCGGAGAGGCTATAGCG
GTGTTACAGGGCGGGCACACCACTAGTGTTGCGGGCGTAGTATTCCTGGA
TATGGGTGTCGGAGAGGAAAGGGGAGAGGGAAAAGGAAAGAGTAGGAGGA
AGAAGGGAAGAGGAGGGGGTGGTGGAAGGGAAGAGGTAGCATTCTTGGCA
TCAGTTGGCAATGATCGCATGCTCAATTTCTGGGAATGTTCGCTTCCTAG
ACTTGCCGGTAACTGCAGCAGCAACAGCATCAAAAGCAACACCAACTTCA
ACAGCAACAGCAGCAAGTTAAGACGGCCGCGGATTTTGAAGCAATTTACT
GATTTGCCGGGGAAGCCAAATTGGATGGTCAGCACCGTTCTGATGTCTGA
TTCTGCTGCTACTGTCGCTCCTGCTGCAGCTACTTCTCAGCTGGAGGTTC
GCGGTGAAGAAAATGAAGAAGGAGGGAAAGAGGCAGGCAGGGGAAAGGGG
GAGGACGGTGTGACACAACGGTCTTTGCGAGTGTTTGTTGCGATGACCAC
CTCGGAGATCGCGGTGTTGAATGTAGATATCAGTGTACAGCGGGAGACGC
ATCAGCAGTCGTAGGAATAGCAGCAGTATCATTTGCAGCGGCAGCAACAG
CAGCAGCAGCAGCATGAGGAGGCTGGGAAGCAGCGTGATCATCAGTGTAC
AGCGGGAGACGCACAGCAGCAGCAGTCGGAGGAATAGCAGCAGTATCATT
TGCAGCGGCAGCAACAGCAGCAGCAGCAGCAGCATGAGGAGGCTGGGAAG
CAGCGTGATGAAGAAGGCATCGTTATGTACATATAGAACACAATTTTGAT
TGGGGGGATGGGGCGTTGGAGTGAAAATCAGAAAATGTCAGGAAGGTGGC
AGG

Coding sequence (CDS) from alignment at scaffold_27:171025..173177-

>mRNA_8687 ID=mRNA_8687|Name=jgi.p|Nanoce1779_2|546586|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_27:171025..173177- (Nannochloropsis oceanica)
ATGGACGATGACGAAGGAAGAGGAGAGCGGTATGCACCGCATGCCCTGTC
GTTTTCCATAGACCTGGACAGCGCTTCATGGTCGATGCTGAAAGGCCACC
GTGGGGAGGTTCTATCTCTCGACATTTTAGGGCTCGAGCGGGCAGGAACA
GGGCGTGACGCTTCCGGCATGGTTTTACTGGCATCGGGAGGGGAGGATTC
AACATGCCGGGTGTGGGATGTGGCGGCCGGCCGGGCCATTAAGTGCTACA
CGGGCATGTTCGAGGATAACGAGGGAGTCGGGGCAGTGGCATTCGTCGAT
GCCTCCCGCCTCCTTGCTGCCACCAGCACCTCAATTTACGAACTGGACTT
AAACTTCCCAGGTGTAGTTGTCAGAGAAGCATTGGGTACACTCCCATCAG
TGACCAACGATGAGATCAACCAAGTAGCCGTTCATCCTAGGAAGGGCAAC
AACCATGTGGCCGTTGCGGATGACAGTGGTACTGTTACTCTCCTTGACTC
TTCTGTCCGTCCACCCAAGCCCATTCGAACCCTTCGAAGATCCAGCGACA
ATTATGACTTGTGTACCTGTGTCGCATTCCGACCACGGGTGCCATATGAC
TTGGCGTGTGGGTTTCATAGTACGTGCACAGTGGGCCTATGGGACTTTTC
GAAGGGCCAGAAAGGCTGTCGTGCTGTCGATGTATCGGCAGCAGCAGTAG
GAGAAGGGGAATGTGAAGATGACGATCCCACTATAGCACCGTCAGCGGCG
TCTTCATGCCAGTTGTTCAATCCCCCGTATGTTAATTCTCTGGCTTTTTC
GGCTTGTGGAAGGTGGGTGGCGGTGGGGAAGGGGAATGGGGAGGTTGGGA
TTTATGACTACGTAAAGGGGGGAGGAGAAGGAGGGGGAGGAGGCAGCGGA
GAGGCTATAGCGGTGTTACAGGGCGGGCACACCACTAGTGTTGCGGGCGT
AGTATTCCTGGATATGGGTGTCGGAGAGGAAAGGGGAGAGGGAAAAGGAA
AGAGTAGGAGGAAGAAGGGAAGAGGAGGGGGTGGTGGAAGGGAAGAGGTA
GCATTCTTGGCATCAGTTGGCAATGATCGCATGCTCAATTTCTGGGAATG
TTCGCTTCCTAGACTTGCCGGTAACTGCAGCAGCAACAGCATCAAAAGCA
ACACCAACTTCAACAGCAACAGCAGCAAGTTAAGACGGCCGCGGATTTTG
AAGCAATTTACTGATTTGCCGGGGAAGCCAAATTGGATGGTCAGCACCGT
TCTGATGTCTGATTCTGCTGCTACTGTCGCTCCTGCTGCAGCTACTTCTC
AGCTGGAGGTTCGCGGTGAAGAAAATGAAGAAGGAGGGAAAGAGGCAGGC
AGGGGAAAGGGGGAGGACGGTGTGACACAACGGTCTTTGCGAGTGTTTGT
TGCGATGACCACCTCGGAGATCGCGGTGTTGAATGTAGATATCAGTGTAC
AGCGGGAGACGCATCAGCAGTCGTAG

Synonyms

Publications