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Properties
| Property Name | Value |
|---|
| TranscriptId | 603688 |
| Track | FilteredModels2 |
| ProteinId | 603602 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:163335..166604 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8685 ID=mRNA_8685|Name=jgi.p|Nanoce1779_2|603602|organism=Nannochloropsis oceanica|type=mRNA|length=3096bp
AATAGGGGAGGCTGGGGCCCGACACGCAGCCGTATCACTGGAGATCATCA
TCATCACTGGAGCATGGCACCGCCGCCCACGGGAAGGGGAACGTCCAAGT
TTCAGACGGCCTGTGCCTGGGAGATGCAAAACAGTCTCAAGTGCATGGAG
ACGGGAGATAAGGAGAAATGTGCCGATGTGATTGAGATGTACAAGGACTG
CCGGAAAGAGGAATCGGACAAGAAGAAGGAGGTCCGGGCTGCGAGTGGAG
GGGGCGGATTCAAGTGGTGATTGTGAGACCTCATACCCACCATCACGGAA
TTCACGCGGGGAGGAATGACACAAGCTACCATGCGGTGTGCTGTGCTGTT
AGATTTTGCGGCGGTGCTAAAAGTACTGGTTTTGACGTCGGGCCTGCTGT
GCGTGCAAGGATTCTTCTATCCAGCTGGTCAGTCGACTCGTCATACCCAC
ACCTGGAATAAAAGACCATGGCATACTCCATCGCCATCCTCCATTTCAAG
TCCCTTCTTCTTGCCCCACACCATCTCTTGCCAAAATACAATGCTCGGCG
GCAGACGTTCCGGGAATGACAATCACCACCACCAGCAACAAACCCTTCAG
CACTTTAGAGACAAGGACAAAGCGGGGCCCCTCAAAGCCCTCCGGCAAGC
CGCTGCTCTCCTAAATAGCGTTCTCCAGCTAGTCTTCTCCTCAGGTGATG
TCTTTGGTACCTATTCTTCCCTCCCTTCTGACACTCCCACGCCAGATCTG
GGGCGACGGCGGGGGGGGGCGAGCAGAAGCGGCGGTGGCGGCCCTCGGTG
GGGACGTGGCCGCATTGATGGGCAGGGGGAAGAAAATGGTGGTGATGACG
ATAAAGCAGAAGGTTATATGGGAGCGGAGGGGGGAGGAGAGGAGACAGAG
GCAGGGATTGAGAGGTTAAGTGATATGGTAAGCCAGCGGGATCTAAACTC
GTGGGAAGCCTGGCAAGGAGGCAGCCCTCGAAAGCAACAAGTGGCTGAGG
AACAGCGGGCGCAACGCAAGCAACGACGACGGAAAAAGATGACGTTTTCG
ACCCGATATTCGTGTGCGGTGAGCGTGGCGAATGCATCGCGGTTGGATGA
GTACATGGCTTTGCCCTTTGATCAATATTCCCTGTTGGACCAATCTTTTA
TATCTCGCGTGGAGGGGAAAGAGAACGAGCAAGGCAATGTGTTTCGGTTC
ATGGTCCCAGCAAATGAGTTGGTTGGCTTGCAGACTGTGCCCATTGTCGA
TTTGCGCGTGGATGTGGATGCGCGGAAACGCCAACTGTCCATCACCTCCA
TCTCGTCGCGTTTCGTCGCTCGGGCTTCCGATGGCACCATTCTAGGGACA
CAGTCCATGAGCCTCCTGACTAATAACTCGCTTGCTTTCTCTACGCGAAT
CATTTGGGACAGCAAGGTCGCTAGACAAGGTGGTAAGCTGGGCTCTGTGC
CTTATGCGGGCACCCCGTCTGCTACAGGTGCTGCTGCTGACGAATGGGCT
CGAGATGTACCAGCAGAGGGTGGCGGAAACGGACCAGGGGCCAACTTGGC
GCGTTTGCGATGGCGTATCTTCCGTCGAGGCGGTAATGCAATCAAGGCGG
CGGAGATGGAGCTGCCGTTGAATGACAAATTAACGGCGGGATCAGATTCT
CCCCCCGAGCTGGTTAATCTGGACGTGGCCTCCCAACGACTGCGTAAGCT
CTCGTGCCGGGCAAATTTGGAGGTGGGTGTGGTAGTTCCGCCACCCTTTT
CTTTGCTTCCTGGACTGATCCTACGACAGGGCGCCTCTCTCATCCTCTCA
ACGTTGGTGGGCACGCTGGTGAATCGCTTTTTGGAACTCTTGATCGAAGA
TTACCACAAATGGCAAGACCAAGCGAGTCGGGAAGCGATTGCTGGGGCTT
TACTGGGTTATGACCCTGAGCGGTTCGACGAGCGAGAGATTGAAGTGTCG
GAGGCGGATGAAGATGAAGATGATCCGCCGCCTCCGCCGTGCATGGATCC
ACTTCTAGAACCCGAGTACATTATTTAGGAAACGGAGATCACTTTAGGGA
AGGAGTACCATTTAGGAGAAGGAATCATGAATAAGGTCCTTCGCGTGGTG
GACTGGTTCGTTCGGACGCCCGAGATACCCATAGGTAGTGCTAAGCTTGT
CTCAATCCCCTTGTCGCACTACTGTGAAAAGGCTCGTTGGTGCCTCGACT
TATCGCCGCTCCGCGACACGTACATCGAAGAGGCGCACGCCCCTGTGTTT
CACACCAAGCATGTGGTCTCCTTGACCAATAAACGCAGCGCTTCAAGCAC
CCCTGTGTTCGTCCTGTCTGGAAACAGCACGAGCGACCCACCAACCATAA
TCCAGGGCTCTGCAATGATCCTCGCGCACCTGGCCCAGACCTTCCCTGCC
GAGCTTGGACACCTCTACCCTCCCGGAGAAAAGGGAGAGCGTGTGCGCAC
TCTCGAACAGGTCTTGGACAACCAATTGGGTCCACAGTCGCGCAAGCTGG
TGTATTGGGCAATGTGGCAGGCCCGGCAAGAGGGACTGTCCACATCCAAC
CCCTTGTTAGACGCGCTTGTACCTAAGGTCGAAGCCCTGCTCTGGAATCT
GGGGGAGGGCAAGATCCTGTTCAAGATGATGCAAGCGATGAATATTGACG
CCGATTCCATTGTCACTGCCCTGGAAGACTGTCGGCAAGTCTTCAAGGAA
GCCTCCGCCATGCTGGCGGGCGAGGGCGAGGGGGAAGGCAAGGGCCAGCA
GAGAAAGTACCTTCTAGGCGGAGAGCGCATGACGGCTGCAGACCTGACAT
TGGCTGCCTTGGCCTATCCCCTCATTAATCCGCCTGCATTTGCCTCACTG
GGCCTCTCTGGGTCTAGCGCTTCCCCCTGGACCATGAAGCTGGGTGATTT
GAGTGCCGAGTTCCGAGCTACCCCTGCGGGTCAGCATGTCCTCCGGCTGT
ATGCAGAGGAGCGATTTCCTGCTGTGGATGGAACAGGCACGTTGTGTCTG
CGGACGGTGAATTGTAACAAGATGCCATGGCAGTAAATTAGAACTGGACG
TGATGTTTCTTTAATTTCGGTCTTGGTGACGCCCGAGGTTCGTACG back to topprotein sequence of jgi.p|Nanoce1779_2|603602 >mRNA_8685-protein ID=mRNA_8685-protein|Name=jgi.p|Nanoce1779_2|603602|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MTQATMRCAVLLDFAAVLKVLVLTSGLLCVQGFFYPAGQSTRHTHTWNKR
PWHTPSPSSISSPFFLPHTISCQNTMLGGRRSGNDNHHHQQQTLQHFRDK
DKAGPLKALRQAAALLNSVLQLVFSSGDVFGTYSSLPSDTPTPDLGRRRG
GASRSGGGGPRWGRGRIDGQGEENGGDDDKAEGYMGAEGGGEETEAGIER
LSDMVSQRDLNSWEAWQGGSPRKQQVAEEQRAQRKQRRRKKMTFSTRYSC
AVSVANASRLDEYMALPFDQYSLLDQSFISRVEGKENEQGNVFRFMVPAN
ELVGLQTVPIVDLRVDVDARKRQLSITSISSRFVARASDGTILGTQSMSL
LTNNSLAFSTRIIWDSKVARQGGKLGSVPYAGTPSATGAAADEWARDVPA
EGGGNGPGANLARLRWRIFRRGGNAIKAAEMELPLNDKLTAGSDSPPELV
NLDVASQRLRKLSCRANLEVGVVVPPPFSLLPGLILRQGASLILSTLVGT
LVNRFLELLIEDYHKWQDQASREAIAGALLGYDPERFDEREIEVSEADED
EDDPPPPPCMDPLLEPEYII* back to topmRNA from alignment at scaffold_27:163335..166604- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8685 ID=mRNA_8685|Name=jgi.p|Nanoce1779_2|603602|organism=Nannochloropsis oceanica|type=mRNA|length=3270bp|location=Sequence derived from alignment at scaffold_27:163335..166604- (Nannochloropsis oceanica)
AATAGGGGAGGCTGGGGCCCGACACGCAGCCGTATCACTGGAGATCATCA
TCATCACTGGAGCATGGCACCGCCGCCCACGGGAAGGGGAACGTCCAAGT
TTCAGACGGCCTGTGCCTGGGAGATGCAAAACAGTCTCAAGTGCATGGAG
ACGGGAGATAAGGAGAAATGTGCCGATGTGATTGAGATGTACAAGGACTG
CCGGAAAGAGGAATCGGACAAGAAGAAGGAGGTCCGGGCTGCGAGTGGAG
GGGGCGGATTCAAGTGGTGATTGTGAGACCTCATACCCACCATCACGGAA
TTCACGCGGGGAGGAATGACACAAGCTACCATGCGGTGTGCTGTGCTGTT
AGATTTTGCGGCGGTGCTAAAAGTACTGGTTTTGACGTCGGGCCTGCTGT
GCGTGCAAGGATTCTTCTATCCAGCTGGTCAGTCGACTCGTCATACCCAC
ACCTGGAATAAAAGACCATGGCATACTCCATCGCCATCCTCCATTTCAAG
TCCCTTCTTCTTGCCCCACACCATCTCTTGCCAAAATACAATGCTCGGCG
GCAGACGTTCCGGGAATGACAATCACCACCACCAGCAACAAACCCTTCAG
CACTTTAGAGACAAGGACAAAGCGGGGCCCCTCAAAGCCCTCCGGCAAGC
CGCTGCTCTCCTAAATAGCGTTCTCCAGCTAGTCTTCTCCTCAGGTGATG
TCTTTGGTACCTATTCTTCCCTCCCTTCTGACACTCCCACGCCAGATCTG
GGGCGACGGCGGGGGGGGGCGAGCAGAAGCGGCGGTGGCGGCCCTCGGTG
GGGACGTGGCCGCATTGATGGGCAGGGGGAAGAAAATGGTGGTGATGACG
ATAAAGCAGAAGGTTATATGGGAGCGGAGGGGGGAGGAGAGGAGACAGAG
GCAGGGATTGAGAGGTTAAGTGATATGGTAAGCCAGCGGGATCTAAACTC
GTGGGAAGCCTGGCAAGGAGGCAGCCCTCGAAAGCAACAAGTGGCTGAGG
AACAGCGGGCGCAACGCAAGCAACGACGACGGAAAAAGATGACGTTTTCG
ACCCGATATTCGTGTGCGGTGAGCGTGGCGAATGCATCGCGGTTGGATGA
GTACATGGCTTTGCCCTTTGATCAATATTCCCTGTTGGACCAATCTTTTA
TATCTCGCGTGGAGGGGAAAGAGAACGAGCAAGGCAATGTGTTTCGGTTC
ATGGTCCCAGCAAATGAGTTGGTTGGCTTGCAGACTGTGCCCATTGTCGA
TTTGCGCGTGGATGTGGATGCGCGGAAACGCCAACTGTCCATCACCTCCA
TCTCGTCGCGTTTCGTCGCTCGGGCTTCCGATGGCACCATTCTAGGGACA
CAGTCCATGAGCCTCCTGACTAATAACTCGCTTGCTTTCTCTACGCGAAT
CATTTGGGACAGCAAGGTCGCTAGACAAGGTGGTAAGCTGGGCTCTGTGC
CTTATGCGGGCACCCCGTCTGCTACAGGTGCTGCTGCTGACGAATGGGCT
CGAGATGTACCAGCAGAGGGTGGCGGAAACGGACCAGGGGCCAACTTGGC
GCGTTTGCGATGGCGTATCTTCCGTCGAGGCGGTAATGCAATCAAGGCGG
CGGAGATGGAGCTGCCGTTGAATGACAAATTAACGGCGGGATCAGATTCT
CCCCCCGAGCTGGTTAATCTGGACGTGGCCTCCCAACGACTGCGTAAGCT
CTCGTGCCGGGCAAATTTGGAGGTGGGTGTGGTAGTTCCGCCACCCTTTT
CTTTGCTTCCTGGACTGATCCTACGACAGGGCGCCTCTCTCATCCTCTCA
ACGTTGGTGGGCACGCTGGTGAATCGCTTTTTGGAACTCTTGATCGAAGA
TTACCACAAATGGCAAGACCAAGCGAGTCGGGAAGCGATTGCTGGGGCTT
TACTGGGTTATGACCCTGAGCGGTTCGACGAGCGAGAGATTGAAGTGTCG
GAGGCGGATGAAGATGAAGATGATCCGCCGCCTCCGCCGTGCATGGATCC
ACTTCTAGAACCCGAGTACATTATTTAGGAAACGGAGATCACTTTAGGGA
AGGAGTACCATTTAGGAGAAGGTGTGGTTGACCAGCTGTGAATAAATGAA
TGGATAACAAGGCTTAAATATAGACAGCCACATGGACTAACTTAAAGTCA
CTCAATTTTTAAGTTGCGCTCTCGCACATTTTTCCCCTGCTTTCTCTCTC
AGTTGTGACCACTCATAGAGCCGTATCCCCCCACTCCCCACCCAGGAATC
ATGAATAAGGTCCTTCGCGTGGTGGACTGGTTCGTTCGGACGCCCGAGAT
ACCCATAGGTAGTGCTAAGCTTGTCTCAATCCCCTTGTCGCACTACTGTG
AAAAGGCTCGTTGGTGCCTCGACTTATCGCCGCTCCGCGACACGTACATC
GAAGAGGCGCACGCCCCTGTGTTTCACACCAAGCATGTGGTCTCCTTGAC
CAATAAACGCAGCGCTTCAAGCACCCCTGTGTTCGTCCTGTCTGGAAACA
GCACGAGCGACCCACCAACCATAATCCAGGGCTCTGCAATGATCCTCGCG
CACCTGGCCCAGACCTTCCCTGCCGAGCTTGGACACCTCTACCCTCCCGG
AGAAAAGGGAGAGCGTGTGCGCACTCTCGAACAGGTCTTGGACAACCAAT
TGGGTCCACAGTCGCGCAAGCTGGTGTATTGGGCAATGTGGCAGGCCCGG
CAAGAGGGACTGTCCACATCCAACCCCTTGTTAGACGCGCTTGTACCTAA
GGTCGAAGCCCTGCTCTGGAATCTGGGGGAGGGCAAGATCCTGTTCAAGA
TGATGCAAGCGATGAATATTGACGCCGATTCCATTGTCACTGCCCTGGAA
GACTGTCGGCAAGTCTTCAAGGAAGCCTCCGCCATGCTGGCGGGCGAGGG
CGAGGGGGAAGGCAAGGGCCAGCAGAGAAAGTACCTTCTAGGCGGAGAGC
GCATGACGGCTGCAGACCTGACATTGGCTGCCTTGGCCTATCCCCTCATT
AATCCGCCTGCATTTGCCTCACTGGGCCTCTCTGGGTCTAGCGCTTCCCC
CTGGACCATGAAGCTGGGTGATTTGAGTGCCGAGTTCCGAGCTACCCCTG
CGGGTCAGCATGTCCTCCGGCTGTATGCAGAGGAGCGATTTCCTGCTGTG
GATGGAACAGGCACGTTGTGTCTGCGGACGGTGAATTGTAACAAGATGCC
ATGGCAGTAAATTAGAACTGGACGTGATGTTTCTTTAATTTCGGTCTTGG
TGACGCCCGAGGTTCGTACG back to topCoding sequence (CDS) from alignment at scaffold_27:163335..166604- >mRNA_8685 ID=mRNA_8685|Name=jgi.p|Nanoce1779_2|603602|organism=Nannochloropsis oceanica|type=CDS|length=1713bp|location=Sequence derived from alignment at scaffold_27:163335..166604- (Nannochloropsis oceanica)
ATGACACAAGCTACCATGCGGTGTGCTGTGCTGTTAGATTTTGCGGCGGT
GCTAAAAGTACTGGTTTTGACGTCGGGCCTGCTGTGCGTGCAAGGATTCT
TCTATCCAGCTGGTCAGTCGACTCGTCATACCCACACCTGGAATAAAAGA
CCATGGCATACTCCATCGCCATCCTCCATTTCAAGTCCCTTCTTCTTGCC
CCACACCATCTCTTGCCAAAATACAATGCTCGGCGGCAGACGTTCCGGGA
ATGACAATCACCACCACCAGCAACAAACCCTTCAGCACTTTAGAGACAAG
GACAAAGCGGGGCCCCTCAAAGCCCTCCGGCAAGCCGCTGCTCTCCTAAA
TAGCGTTCTCCAGCTAGTCTTCTCCTCAGGTGATGTCTTTGGTACCTATT
CTTCCCTCCCTTCTGACACTCCCACGCCAGATCTGGGGCGACGGCGGGGG
GGGGCGAGCAGAAGCGGCGGTGGCGGCCCTCGGTGGGGACGTGGCCGCAT
TGATGGGCAGGGGGAAGAAAATGGTGGTGATGACGATAAAGCAGAAGGTT
ATATGGGAGCGGAGGGGGGAGGAGAGGAGACAGAGGCAGGGATTGAGAGG
TTAAGTGATATGGTAAGCCAGCGGGATCTAAACTCGTGGGAAGCCTGGCA
AGGAGGCAGCCCTCGAAAGCAACAAGTGGCTGAGGAACAGCGGGCGCAAC
GCAAGCAACGACGACGGAAAAAGATGACGTTTTCGACCCGATATTCGTGT
GCGGTGAGCGTGGCGAATGCATCGCGGTTGGATGAGTACATGGCTTTGCC
CTTTGATCAATATTCCCTGTTGGACCAATCTTTTATATCTCGCGTGGAGG
GGAAAGAGAACGAGCAAGGCAATGTGTTTCGGTTCATGGTCCCAGCAAAT
GAGTTGGTTGGCTTGCAGACTGTGCCCATTGTCGATTTGCGCGTGGATGT
GGATGCGCGGAAACGCCAACTGTCCATCACCTCCATCTCGTCGCGTTTCG
TCGCTCGGGCTTCCGATGGCACCATTCTAGGGACACAGTCCATGAGCCTC
CTGACTAATAACTCGCTTGCTTTCTCTACGCGAATCATTTGGGACAGCAA
GGTCGCTAGACAAGGTGGTAAGCTGGGCTCTGTGCCTTATGCGGGCACCC
CGTCTGCTACAGGTGCTGCTGCTGACGAATGGGCTCGAGATGTACCAGCA
GAGGGTGGCGGAAACGGACCAGGGGCCAACTTGGCGCGTTTGCGATGGCG
TATCTTCCGTCGAGGCGGTAATGCAATCAAGGCGGCGGAGATGGAGCTGC
CGTTGAATGACAAATTAACGGCGGGATCAGATTCTCCCCCCGAGCTGGTT
AATCTGGACGTGGCCTCCCAACGACTGCGTAAGCTCTCGTGCCGGGCAAA
TTTGGAGGTGGGTGTGGTAGTTCCGCCACCCTTTTCTTTGCTTCCTGGAC
TGATCCTACGACAGGGCGCCTCTCTCATCCTCTCAACGTTGGTGGGCACG
CTGGTGAATCGCTTTTTGGAACTCTTGATCGAAGATTACCACAAATGGCA
AGACCAAGCGAGTCGGGAAGCGATTGCTGGGGCTTTACTGGGTTATGACC
CTGAGCGGTTCGACGAGCGAGAGATTGAAGTGTCGGAGGCGGATGAAGAT
GAAGATGATCCGCCGCCTCCGCCGTGCATGGATCCACTTCTAGAACCCGA
GTACATTATTTAG back to top
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